--- a/collapseBed.xml	Sat Mar 10 08:17:36 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,19 +0,0 @@
-<tool id="collapseBed" name="collapse">
-  <description>intervals</description>
-  <command interpreter="python">collapseBed2.py $input $strand $score > $outfile </command>
-  <inputs>
-    <param name="input" format="interval" type="data" label="Original file"/>
-    <param name="strand" size="10" type="integer" value="6" label="strand column" help="set 0 to ignore strand information" />
-    <param name="score" size="10" type="integer" value="5" label="for duplicate lines, keep the one with max value in column" help="set 0 to ignore score information" />
-    </inputs>
-  <outputs>
-    <data format="input" name="outfile" />
-  </outputs>
-  <help>
-
-**What it does**
-
-This tool collapses genomic intervals that have the same position (and strandness if specified) and output a set of unique intervals.  
-
-  </help>
-</tool>