Mercurial > repos > xuebing > sharplabtool
diff fastamarkov.xml @ 14:76e1b1b21cce default tip
Deleted selected files
author | xuebing |
---|---|
date | Tue, 13 Mar 2012 19:05:10 -0400 |
parents | 292186c14b08 |
children |
line wrap: on
line diff
--- a/fastamarkov.xml Sat Mar 10 08:17:36 2012 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,21 +0,0 @@ -<tool id="fastamarkov" name="background model"> - <description>of DNA sequence</description> - <command>cat $input | fasta-get-markov -m $m $norc > $output 2> err.txt - - </command> - <inputs> - <param name="input" type="data" format="fasta" label="Sequence file (FASTA)"/> - <param name="m" size="10" type="integer" value="0" label="Order of Markov model to use"/> - <param name="norc" label="Combine forward and reverse complement frequencies" type="boolean" truevalue="" falsevalue="-norc" checked="True"/> - </inputs> - <outputs> - <data format="txt" name="output" /> - </outputs> - <help> - -**What it does** - -This tool generates a markov model from a fasta sequence file. - - </help> -</tool>