Mercurial > repos > xuebing > sharplabtool
diff revcompl.xml @ 14:76e1b1b21cce default tip
Deleted selected files
author | xuebing |
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date | Tue, 13 Mar 2012 19:05:10 -0400 |
parents | 292186c14b08 |
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--- a/revcompl.xml Sat Mar 10 08:17:36 2012 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,41 +0,0 @@ -<tool id="revcompl" name="reverse complement"> - <description>of DNA/RNA sequences</description> - <command interpreter="python">revcompl.py $input $output $fasta $rna </command> - <inputs> - <param name="input" format="txt" type="data" label="Original sequence file"/> - <param name="fasta" label="Check if input is fasta format" type="boolean" truevalue="fasta" falsevalue="txt" checked="False"/> - <param name="rna" label="Check if need to output as RNA sequences" type="boolean" truevalue="rna" falsevalue="dna" checked="False"/> - </inputs> - <outputs> - <data format="input" name="output" /> - </outputs> - <help> - -**What it does** - -This tool outputs reverse complementary of DNA/RNA sequences in the input file. The input can be fasta format or raw sequences (each line is a sequence). - -Degenerate nucleotides are supported. Here is the match table: - -A to T/U - -C to G - -G to C - -T/U to A - -M to K - -W to W - -S to S - -R to Y - -Y to R - -N to N - - </help> -</tool>