Mercurial > repos > xuebing > sharplabtool
view tools/mytools/collapseBed.xml @ 3:33c067c3ae34
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author | xuebing |
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date | Fri, 09 Mar 2012 19:47:53 -0500 |
parents | 9071e359b9a3 |
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<tool id="collapseBed" name="collapse"> <description>intervals</description> <command interpreter="python">collapseBed2.py $input $strand $score > $outfile </command> <inputs> <param name="input" format="interval" type="data" label="Original file"/> <param name="strand" size="10" type="integer" value="6" label="strand column" help="set 0 to ignore strand information" /> <param name="score" size="10" type="integer" value="5" label="for duplicate lines, keep the one with max value in column" help="set 0 to ignore score information" /> </inputs> <outputs> <data format="input" name="outfile" /> </outputs> <help> **What it does** This tool collapses genomic intervals that have the same position (and strandness if specified) and output a set of unique intervals. </help> </tool>