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view tools/mytools/fimo_out/cisml.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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<?xml version="1.0" encoding="UTF-8" standalone="no"?> <?xml-stylesheet type="text/xsl" href="fimo-to-html.xsl"?> <!-- Begin document body --> <cis-element-search xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://zlab.bu.edu/schema/cisml cisml.xsd" xmlns="http://zlab.bu.edu/schema/cisml" xmlns:mem="http://noble.gs.washington.edu/meme" > <program-name>fimo</program-name> <parameters> <pattern-file>AATAAA.motif</pattern-file> <sequence-file>/Users/xuebing/Downloads/hotair-target.fa.fasta</sequence-file> <site-pvalue-cutoff>0.0001</site-pvalue-cutoff> <sequence-filtering on-off="off"/> </parameters> <pattern accession="AATAAA" name="AATAAA"> <scanned-sequence accession="hg18_chr2_176729347_176730199_+" name="hg18_chr2_176729347_176730199_+"> </scanned-sequence> <scanned-sequence accession="hg18_chr16_62574196_62575125_+" name="hg18_chr16_62574196_62575125_+"> </scanned-sequence> <scanned-sequence accession="hg18_chr9_13935898_13936724_+" 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