Mercurial > repos > xuebing > sharplabtool
view tools/plotting/bar_chart.xml @ 0:9071e359b9a3
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author | xuebing |
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date | Fri, 09 Mar 2012 19:37:19 -0500 |
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<tool id="barchart_gnuplot" name="Bar chart"> <description>for multiple columns</description> <command interpreter="python"> #if $xtic.userSpecified == "Yes" #bar_chart.py $input $xtic.xticColumn $colList "$title" "$ylabel" $ymin $ymax $out_file1 "$pdf_size" #else #bar_chart.py $input 0 $colList "$title" "$ylabel" $ymin $ymax $out_file1 "$pdf_size" #end if </command> <inputs> <param name="input" type="data" format="tabular" label="Dataset" help="Dataset missing? See TIP below"/> <conditional name="xtic"> <param name="userSpecified" type="select" label="Use X Tick labels?" help="see example below"> <option value="Yes">Yes</option> <option value="No">No</option> </param> <when value="Yes"> <param name="xticColumn" type="data_column" data_ref="input" numerical="False" label="Use this column for X Tick labels" /> </when> <when value="No"> </when> </conditional> <param name="colList" label="Numerical columns" type="data_column" numerical="True" multiple="True" data_ref="input" help="Multi-select list - hold the appropriate key while clicking to select multiple columns" /> <param name="title" type="text" size="30" value="Bar Chart" label="Plot title"/> <param name="ylabel" type="text" size="30" value="V1" label="Label for Y axis"/> <param name="ymin" type="integer" size="4" value="0" label="Minimal value on Y axis" help="set to 0 for autoscaling"/> <param name="ymax" type="integer" size="4" value="0" label="Maximal value on Y axis" help="set to 0 for autoscaling"/> <param name="pdf_size" type="select" label="Choose chart size (pixels)"> <option value="800,600">Normal: 800 by 600</option> <option value="640,480">Small: 640 by 480</option> <option value="1480,800">Large: 1480 by 800</option> <option value="600,800">Normal Flipped: 600 by 800</option> <option value="480,640">Small Flipped: 480 by 640</option> <option value="800,1480">Large Flipped: 800 by 1480</option> </param> </inputs> <outputs> <data format="png" name="out_file1" /> </outputs> <requirements> <requirement type="python-module">Gnuplot</requirement> <requirement type="python-module">Numeric</requirement> </requirements> <help> **What it does** This tool builds a bar chart on one or more columns. Suppose you have dataset like this one:: Gene1 10 15 Gene2 20 14 Gene3 67 45 Gene4 55 12 Graphing columns 2 and 3 while using column 1 for X Tick Labels will produce the following plot: .. image:: ./static/images/bar_chart.png :height: 324 :width: 540 </help> </tool>