Mercurial > repos > xuebing > sharplabtool
view tools/emboss_5/emboss_banana.pl @ 2:c2a356708570
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author | xuebing |
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date | Fri, 09 Mar 2012 19:45:42 -0500 |
parents | 9071e359b9a3 |
children |
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#! /usr/bin/perl -w use strict; my $cmd_string = join (" ",@ARGV); #my $cmd_string = "/home/djb396/temp/emboss/bin/banana -sequence /home/djb396/universe-prototype/test.fasta -outfile result.txt -graph png -goutfile results -auto"; my $results = `$cmd_string`; my @files = split("\n",$results); foreach my $thisLine (@files) { if ($thisLine =~ /Created /i) { $thisLine =~ /[\w|\.]+$/; $thisLine =$&; print "outfile: $thisLine\n"; } }