directory /tools/mytools/ @ 1:cdcb0ce84a1b

name size permissions
[up] drwxr-xr-x
dir. cdf-old-not-used/ drwxr-xr-x
dir. dreme_out/ drwxr-xr-x
dir. fimo_out/ drwxr-xr-x
dir. splicesitescore/ drwxr-xr-x
file .DS_Store 6148 -rw-r--r--
file ._.DS_Store 82 -rw-r--r--
file ._StartGenometriCorr.xml 403 -rw-r--r--
file ._Start_GenometriCorr.R 402 -rw-r--r--
file ._align2database.py 259 -rw-r--r--
file ._align2database.xml 171 -rw-r--r--
file ._align2multiple.xml 581 -rw-r--r--
file ._alignr.py 251 -rw-r--r--
file ._alignr.xml 581 -rw-r--r--
file ._alignvis.xml 171 -rwxr-xr-x
file ._altschulEriksonDinuclShuffle.py 415 -rw-r--r--
file ._bed_to_bam.xml 572 -rw-r--r--
file ._bedclean.xml 171 -rwxr-xr-x
file ._bedsort.xml 171 -rwxr-xr-x
file ._bigWigAverageOverBed.xml 572 -rw-r--r--
file ._binaverage.xml 581 -rw-r--r--
file ._bowtie2bed.pl 193 -rwxr-xr-x
file ._bowtie2bed.xml 193 -rwxr-xr-x
file ._bwBinavg.xml 572 -rw-r--r--
file ._cdf.r 171 -rwxr-xr-x
file ._cdf.xml 581 -rw-r--r--
file ._closestBed.xml 581 -rw-r--r--
file ._collapseBed.py 530 -rw-r--r--
file ._collapseBed.xml 572 -rw-r--r--
file ._collapseTab.xml 572 -rw-r--r--
file ._convertEnsembl.xml 581 -rw-r--r--
file ._dreme.xml 171 -rw-r--r--
file ._endbias.xml 572 -rw-r--r--
file ._fastamarkov.xml 171 -rwxr-xr-x
file ._fastashuffle1.xml 171 -rwxr-xr-x
file ._fastashuffle2.xml 581 -rw-r--r--
file ._fastqdump.xml 171 -rwxr-xr-x
file ._fimo2-old.xml 171 -rw-r--r--
file ._fimo2.xml 171 -rwxr-xr-x
file ._fimo2bed.py 530 -rw-r--r--
file ._fimo2bed.xml 581 -rw-r--r--
file ._genomeView.xml 581 -rw-r--r--
file ._genomeview-old2.r 572 -rw-r--r--
file ._genomeview.r 572 -rw-r--r--
file ._genomeview_notused 171 -rw-r--r--
file ._headtail.xml 171 -rwxr-xr-x
file ._intersectSig.xml 171 -rw-r--r--
file ._intersectbed.xml 581 -rw-r--r--
file ._intervalSize.xml 171 -rwxr-xr-x
file ._iupac2meme.xml 171 -rwxr-xr-x
file ._makebigwig.sh 403 -rwxr-xr-x
file ._makebigwig.sh-old 287 -rwxr-xr-x
file ._makebigwig.xml 572 -rw-r--r--
file ._makewindow.xml 171 -rwxr-xr-x
file ._meme.xml 171 -rw-r--r--
file ._memelogo.xml 171 -rwxr-xr-x
file ._metaintv.xml 572 -rw-r--r--
file ._metaintv_ext.xml 572 -rw-r--r--
file ._phastCons.xml 572 -rw-r--r--
file ._plotmatrix.xml 171 -rwxr-xr-x
file ._r_wrapper.sh 641 -rwxr-xr-x
file ._r_wrapper_old.sh 641 -rwxr-xr-x
file ._random_interval.py 521 -rw-r--r--
file ._random_interval.xml 572 -rw-r--r--
file ._removeDuplicate.xml 572 -rw-r--r--
file ._resize.xml 171 -rwxr-xr-x
file ._revcompl.py 521 -rw-r--r--
file ._revcompl.xml 581 -rw-r--r--
file ._sampline.py 193 -rwxr-xr-x
file ._seq2meme.py 530 -rw-r--r--
file ._seq2meme.xml 171 -rwxr-xr-x
file ._seqshuffle.py 521 -rw-r--r--
file ._shuffleBed.py 521 -rw-r--r--
file ._shuffleBed.xml 572 -rw-r--r--
file ._shuffleSequenceUsingAltschulErikson.txt 542 -rw-r--r--
file ._spatial_proximity.xml 572 -rw-r--r--
file ._splicesite.xml 171 -rw-r--r--
file ._splicesitescore 240 -rwxr-xr-x
file ._stats.txt 392 -rw-r--r--
file ._venn.xml 581 -rw-r--r--
file .sorted.bed 0 -rw-r--r--
file AATAAA.motif 492 -rw-r--r--
file StartGenometriCorr.xml 1025 -rw-r--r--
file Start_GenometriCorr.R 3007 -rw-r--r--
file align2database.py 4665 -rw-r--r--
file align2database.xml 4554 -rw-r--r--
file align2multiple.xml 4736 -rw-r--r--
file alignr.py 13819 -rw-r--r--
file alignr.xml 7471 -rw-r--r--
file alignvis.py 2647 -rw-r--r--
file alignvis.r 270 -rw-r--r--
file alignvis.xml 1979 -rwxr-xr-x
file altschulEriksonDinuclShuffle.py 3960 -rw-r--r--
file bedClean.py 1112 -rw-r--r--
file bed_to_bam.xml 1421 -rw-r--r--
file bedclean.xml 1209 -rwxr-xr-x
file bedsort.xml 692 -rwxr-xr-x
file bigWigAverageOverBed.xml 560 -rw-r--r--
file binaverage.xml 3397 -rw-r--r--
file binnedAverage.py 2564 -rw-r--r--
file bowtie2bed.pl 1018 -rwxr-xr-x
file bowtie2bed.xml 1580 -rwxr-xr-x
file bwBinavg.xml 1954 -rw-r--r--
file cdf.r 2976 -rwxr-xr-x
file cdf.xml 2876 -rw-r--r--
file closestBed.py 0 -rw-r--r--
file closestBed.xml 1309 -rw-r--r--
file collapseBed.py 1711 -rw-r--r--
file collapseBed.xml 839 -rw-r--r--
file collapseBed2.py 1076 -rw-r--r--
file collapseTab.py 1032 -rw-r--r--
file collapseTab.xml 737 -rw-r--r--
file convertEnsembl.py 413 -rw-r--r--
file convertEnsembl.xml 667 -rw-r--r--
file dreme.xml 2480 -rw-r--r--
file endbias.py 1351 -rw-r--r--
file endbias.xml 504 -rw-r--r--
file fasta-dinucleotide-shuffle.py 5849 -rwxr-xr-x
file fastamarkov.xml 727 -rwxr-xr-x
file fastashuffle1.xml 579 -rwxr-xr-x
file fastashuffle2.xml 1306 -rw-r--r--
file fastqdump.xml 677 -rwxr-xr-x
file fimo2-old.xml 2628 -rw-r--r--
file fimo2.xml 1762 -rwxr-xr-x
file fimo2bed.py 1881 -rw-r--r--
file fimo2bed.xml 635 -rw-r--r--
file genomeView.xml 4704 -rw-r--r--
file genomeview-old2.r 1539 -rw-r--r--
file genomeview.r 2146 -rw-r--r--
file genomeview_notused 1394 -rw-r--r--
file getGenomicScore.py 3471 -rw-r--r--
file headtail.xml 1021 -rwxr-xr-x
file intersectSig.py 3539 -rw-r--r--
file intersectSig.xml 2305 -rw-r--r--
file intersectbed.xml 4311 -rw-r--r--
file intervalOverlap.py 2880 -rw-r--r--
file intervalSize.py 430 -rw-r--r--
file intervalSize.xml 475 -rwxr-xr-x
file iupac2meme.xml 2083 -rwxr-xr-x
file makebigwig.sh 1366 -rwxr-xr-x
file makebigwig.sh-old 1490 -rwxr-xr-x
file makebigwig.xml 1723 -rw-r--r--
file makewindow.py 526 -rw-r--r--
file makewindow.xml 594 -rwxr-xr-x
file meme.xml 16934 -rw-r--r--
file memelogo.xml 673 -rwxr-xr-x
file metaintv.py 3359 -rw-r--r--
file metaintv.xml 1288 -rw-r--r--
file metaintv2.py 3410 -rw-r--r--
file metaintv3.py 3410 -rw-r--r--
file metaintv_ext.py 4265 -rw-r--r--
file metaintv_ext.xml 958 -rw-r--r--
file phastCons.xml 2355 -rw-r--r--
file plotmatrix.py 2626 -rw-r--r--
file plotmatrix.xml 2110 -rwxr-xr-x
file ptb-3t3 512473 -rw-r--r--
file ptb-ptb 3322303 -rw-r--r--
file r_wrapper.sh 36 -rwxr-xr-x
file r_wrapper_old.sh 565 -rwxr-xr-x
file random_interval.py 2843 -rw-r--r--
file random_interval.xml 2941 -rw-r--r--
file removeDuplicate.xml 316 -rw-r--r--
file resize.py 1869 -rw-r--r--
file resize.xml 1691 -rwxr-xr-x
file revcompl.py 1911 -rw-r--r--
file revcompl.xml 998 -rw-r--r--
file sampline.py 4639 -rwxr-xr-x
file sampline.xml 4449 -rwxr-xr-x
file seq2meme.py 3335 -rw-r--r--
file seq2meme.xml 979 -rwxr-xr-x
file seqshuffle.py 1121 -rw-r--r--
file sequence.py 29075 -rwxr-xr-x
file shuffleBed.py 3247 -rw-r--r--
file shuffleBed.xml 2107 -rw-r--r--
file shuffleSequenceUsingAltschulErikson.txt 1564 -rw-r--r--
file spatial_proximity.py 1038 -rw-r--r--
file spatial_proximity.xml 1701 -rw-r--r--
file splicesite.xml 1438 -rw-r--r--
file stats.txt 721 -rw-r--r--
file venn.xml 3138 -rw-r--r--