Mercurial > repos > xuebing > splicesite_max_entropy

comparison splicesitescore/score5.pl~ @ 8:ec97befe722b

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author xuebing
date Sun, 01 Apr 2012 08:14:45 -0400
parents 3fd430270c0c
children
comparison
equal deleted inserted replaced
7:3fd430270c0c 8:ec97befe722b
2 2
3 3
4 my $inputfile = $ARGV[0]; 4 my $inputfile = $ARGV[0];
5 my $usemaxent = 1; 5 my $usemaxent = 1;
6 6
7 my $modelpath = "/Users/xuebing/galaxy-dist/tools/mytools/splicesitescore/"; 7 my $modelpath = "/home/wuxbl/rowley/tools/maxentscan/splicemodels/";
8 my %me2x5 = &makescorematrix($modelpath.'me2x5'); 8 my %me2x5 = &makescorematrix($modelpath.'me2x5');
9 my %seq = &makesequencematrix($modelpath.'splicemodels/splice5sequences'); 9 my %seq = &makesequencematrix($modelpath.'splicemodels/splice5sequences');
10 10
11 my %bgd; 11 my %bgd;
12 $bgd{'A'} = 0.27; 12 $bgd{'A'} = 0.27;