Mercurial > repos > yating-l > blastxmltopsl

annotate README.md @ 3:ec4d9bd6ffc3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 66771f6b1ce2d50e405815ea3f224af8ca775374
author yating-l
date Mon, 09 Jul 2018 17:57:34 -0400
parents d81915b5805f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
1 Galaxy wrapper for blastXmlToPsl
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
2 --------------------------------
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
3
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
4 Converts blast XML output to PSLs
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
5
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
6 This tool is configured only to use this command, at the moment:
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
7 - blastXmlToPsl -convertToNucCoords $input $output
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
8
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
9 Please use another tool or contact me
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
10
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
11 (Contains blastXmlToPsl binary for [linux.x86_64](http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/))
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
12
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
13 TODO:
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
14
d81915b5805f planemo upload commit cdddf587d82288414cfffd0ce6e312b4bf45a842
yating-l
parents:
diff changeset
15 - [ ] Reference a BioConda or manual dependency instead of giving the binary