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comparison test-data/Gallus_gallus_RefSeq.gb @ 0:9573618e2afe draft

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author yating-l
date Wed, 12 Apr 2017 17:43:55 -0400
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1 LOCUS NM_001199713 3613 bp mRNA linear VRT 27-JAN-2017
2 DEFINITION Gallus gallus uncharacterized LOC423300 (NOVA1), transcript variant
3 2, mRNA.
4 ACCESSION NM_001199713
5 VERSION NM_001199713.1
6 KEYWORDS RefSeq.
7 SOURCE Gallus gallus (chicken)
8 ORGANISM Gallus gallus
9 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12 Phasianidae; Phasianinae; Gallus.
13 REFERENCE 1 (bases 1 to 3613)
14 AUTHORS Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
15 J.
16 TITLE ESTs from brain and testis of White Leghorn and red junglefowl:
17 annotation, bioinformatic classification of unknown transcripts and
18 analysis of expression levels
19 JOURNAL Cytogenet. Genome Res. 111 (1), 79-87 (2005)
20 PUBMED 16093725
21 COMMENT VALIDATED REFSEQ: This record has undergone validation or
22 preliminary review. The reference sequence was derived from
23 DN851166.1, CO420756.1 and AADN04000014.1.
24
25 Transcript Variant: This variant (2) lacks an alternate in-frame
26 exon in the 3' coding region, compared to variant 1. The resulting
27 protein (isoform 2) is shorter, compared to isoform 1.
28
29 Sequence Note: This RefSeq record was created from transcript and
30 genomic sequence data to make the sequence consistent with the
31 reference genome assembly. The genomic coordinates used for the
32 transcript record were based on transcript alignments.
33
34 ##Evidence-Data-START##
35 Transcript exon combination :: CO420756.1, CD215801.1 [ECO:0000332]
36 RNAseq introns :: single sample supports all introns
37 SAMEA2201366, SAMEA2201377
38 [ECO:0000348]
39 ##Evidence-Data-END##
40 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
41 1-95 DN851166.1 226-320
42 96-706 CO420756.1 1-611
43 707-3613 AADN04000014.1 5941293-5944199 c
44 FEATURES Location/Qualifiers
45 source 1..3613
46 /organism="Gallus gallus"
47 /mol_type="mRNA"
48 /db_xref="taxon:9031"
49 /chromosome="5"
50 /map="5"
51 /breed="Leghorn"
52 gene 1..3613
53 /gene="NOVA1"
54 /note="uncharacterized LOC423300"
55 /db_xref="CGNC:7484"
56 /db_xref="GeneID:423300"
57 CDS 95..1546
58 /gene="NOVA1"
59 /note="isoform 2 is encoded by transcript variant 2;
60 RNA-binding protein Nova-1; neuro-oncological ventral
61 antigen 1; NOVA alternative splicing regulator 1"
62 /codon_start=1
63 /product="RNA-binding protein Nova-1 isoform 2"
64 /protein_id="NP_001186642.1"
65 /db_xref="CGNC:7484"
66 /db_xref="GeneID:423300"
67 /translation="MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNT
68 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI
69 QGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG
70 LIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQ
71 EDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLGHANLAGVAAF
72 PAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASANPAAAA
73 ANLLATYASEASASGSTAGGTAGTFALGSLAAATAATNGYFGAASPLAASAILGTEKS
74 TDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTI
75 TGTPAATQAAQYLITQRITYEQGVRAANPQKVG"
76 ORIGIN
77 1 cccttcctct tccttcctcc tcctcctccc ccttccctcc ctgccccccc aacaccgaag
78 61 ggaagagaca attctcctcc gagcagcagc aaacatgatg gcggcagctc ccatccagca
79 121 gaacgggact cacaccgggg ttcccataga cctggacccg ccggactccc ggaaaagacc
80 181 gctggaagcc ccccccgaag cgggcagcac caagaggacc aacacgggcg aggatggcca
81 241 atattttcta aaggtcctca tacctagtta tgctgctgga tctataattg ggaagggagg
82 301 acagacaatt gttcagttgc agaaagagac cggggccacc atcaagctgt ctaaatccaa
83 361 agatttttac ccaggtacta cggagcgcgt gtgtctgatc cagggaacag ttgaagcact
84 421 aaatgcagtt catggcttca ttgcagagaa gattcgagaa atgcctcaaa atgtggccaa
85 481 gacagagcct gtcagcatcc tacaacctca gaccactgtt aatccagacc gcatcaaaca
86 541 agtaaagatt atagttccca acagcacagc aggtctgata atagggaagg gaggtgctac
87 601 agtgaaggct ataatggagc agtcaggggc ttgggtgcag ctttcccaga aacctgatgg
88 661 gatcaacttg caagagaggg ttgtcactgt gagtggagaa cctgaacaaa accgaaaagc
89 721 tgtcgaactt atcatccaga agatacaaga ggatccacag agtggcagct gtctcaatat
90 781 cagttatgcc aatgtcacag gtccagtggc caattccaat ccaaccggat ctccttatgc
91 841 aaacactgct gaagtgttac caactgctgc agctgctgca gggctattag gacatgctaa
92 901 ccttgctgga gtggcagcct ttccagcagt tttatctggc tttacaggca atgacctggt
93 961 ggccatcacc tctgcactta atacattagc cagctatgga tataatctca atacattagg
94 1021 tttaggccta agtcaggcag cagctacagg ggctttggct gcagcagctg ccagtgccaa
95 1081 cccagcagca gcagcagcca acttgttggc cacctatgcg agtgaagcct cagccagtgg
96 1141 cagcactgct ggtggtacgg cggggacatt tgcattaggt agcctggctg ctgctactgc
97 1201 tgcaaccaat ggatattttg gagctgcttc tcccctagct gccagtgcca tcctaggaac
98 1261 agaaaaatcc acagatggat caaaggatgt agttgaaata gcagtgccag aaaacttagt
99 1321 tggtgcaata cttggaaaag gagggaaaac attagttgaa taccaggagt tgactggtgc
100 1381 aaggatacag atctctaaaa agggagaatt cgtacctggc acaagaaatc gcaaggtaac
101 1441 cattactgga acaccagctg caacccaggc cgcacagtat ttaattacac aacggatcac
102 1501 atatgagcaa ggagttcggg ctgccaatcc acagaaagtg ggttgagagc ccctgttaaa
103 1561 catgagattg ttttaacccc tccttaccct attttcaaga aggatgtact gtactttgca
104 1621 gaagtgaagt ttttctgtta ttaatatata attatgcaaa tgaatgcgac tatgttgaca
105 1681 atgtgtatat gtaaatataa tgtgttttac cagatgtttc atagagagaa ttttttcttg
106 1741 atctgttttg ttctctatac tttgcttgtg tatatttgtc agaggtgttt ctagtgtaag
107 1801 atttaagcct gccattttac cagcattatt gtagtttaat gattgaatgt agacagggat
108 1861 atgcgtatag ttttcagtat tagttctaga taacactaaa ttaactactg ttaggttggg
109 1921 tatggtgggg tcagtgacct aaaatggagt gaggccaaag cactgtcatg tcagtcttac
110 1981 ttcctgctta gggcacagtg aagtaggaaa caatattttg aaaataagtt ttaaaattta
111 2041 aaatgatcaa aaagcaatat agttgcataa aagcactgta aaatatttaa aaaggttaaa
112 2101 actgtggaaa attatattgg taagtttaca gatcaataaa agcacctgtt ctccatctga
113 2161 actagacaat ggaaataatg ctgcatgctg gccatggccc attcttcacc atttgtaagt
114 2221 tcaacaaaag ttctcacatg gagtcccacc tctaactgag gtttgtacat ttgtttttaa
115 2281 gcactgaaat cactactgat cccatcgcct ggccagtaga acagtcatta ctccattaac
116 2341 attctcactg tttagacaca taactgtggt acagtgtatt ggaaatttta tatacaaaaa
117 2401 gtgaaagtgc caacaaatta ttgatagctg ataatgtttc attatctgca actgcttgat
118 2461 aagtatgttg cattttaaga gcttataatt gtgtataatt tgttaacact agaaacctat
119 2521 tagtattgtg aatgtagatt ttactgtgaa gctatctgtg atttagctgt ttgctcccat
120 2581 gaaggagtct ttgcagcatg gcgctagcag ccaatgcagt ttctaatact cagtaatttg
121 2641 catgttttgt ggagcatttt tatgtcacca accagacagt atttcctgca tgcttattta
122 2701 gaagaggcag ttttccttga gaggtagtgg tctacctttg ccaggctttt tgacaggtca
123 2761 tttcagagta agcctttgtt cccaagaccc aacaactgtc accctcttct gtacctctcc
124 2821 tgagtgccaa ctgcccaggc cattgaccca ccatctgtta acctctgagt ttgcccgctc
125 2881 aaggccactc ataggggcat ccataaccaa gcacctcctc atgctgtgca tgcagtctta
126 2941 aattcaatgg acaaaaataa aatgctggct acctctggat catctggctg agcaactgaa
127 3001 tttcaaaaga gaattacttc catctcaact tcaacccatt gattacgtcc atcctagcaa
128 3061 gctaaatggc atcccagctg ctcctttctg tgcaaccaat taaagaacaa tgagtgtgat
129 3121 gctccatgtc tgaatttcgt ccagcctctc tctgaactgt gatctttgtc ctcatgaact
130 3181 ttcccttttg ttcattgaac tatatggact cttcatttca tattgattta ctgtgcaatt
131 3241 tacttttgga cattgagaac ttgaaataat tccctgatcc cttccccctt cactattaat
132 3301 aactcatttc tgtcaaactg taagagtaga ctcatttttt ttagttttta acattggatt
133 3361 gttatttcat ttagagttct ctatctctaa atatttaatt tagagaatga ttaaaaaggg
134 3421 aatgatatgc ttgtttaaaa tgaaagagaa aagctgtagt aaactgtgtt acttggtaat
135 3481 gactatttat cgtcgatact ctgtagctgt gtaagttttg acaaatagtg tatctcgtga
136 3541 aatcagtggt tagcattgcc gctattatat ttactcattt tatcattata aatgtgctta
137 3601 gttcatcatg tag
138 //
139
140 LOCUS NM_001199712 3685 bp mRNA linear VRT 27-JAN-2017
141 DEFINITION Gallus gallus uncharacterized LOC423300 (NOVA1), transcript variant
142 1, mRNA.
143 ACCESSION NM_001199712 XM_001232692 XM_001232710 XM_421219
144 VERSION NM_001199712.1
145 KEYWORDS RefSeq.
146 SOURCE Gallus gallus (chicken)
147 ORGANISM Gallus gallus
148 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
149 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
150 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
151 Phasianidae; Phasianinae; Gallus.
152 REFERENCE 1 (bases 1 to 3685)
153 AUTHORS Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
154 J.
155 TITLE ESTs from brain and testis of White Leghorn and red junglefowl:
156 annotation, bioinformatic classification of unknown transcripts and
157 analysis of expression levels
158 JOURNAL Cytogenet. Genome Res. 111 (1), 79-87 (2005)
159 PUBMED 16093725
160 COMMENT VALIDATED REFSEQ: This record has undergone validation or
161 preliminary review. The reference sequence was derived from
162 DN851166.1, CN222734.1 and AADN04000014.1.
163 On or before Dec 12, 2010 this sequence version replaced
164 gi:118091782, gi:118091783, gi:118091785.
165
166 Transcript Variant: This variant (1) represents the longer
167 transcript and encodes the longer isoform (1).
168
169 Sequence Note: This RefSeq record was created from transcript and
170 genomic sequence data to make the sequence consistent with the
171 reference genome assembly. The genomic coordinates used for the
172 transcript record were based on transcript alignments.
173
174 ##Evidence-Data-START##
175 Transcript exon combination :: CN222734.1 [ECO:0000332]
176 RNAseq introns :: mixed/partial sample support
177 SAMEA2201357, SAMEA2201358
178 [ECO:0000350]
179 ##Evidence-Data-END##
180 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
181 1-122 DN851166.1 226-347
182 123-749 CN222734.1 47-673
183 750-3685 AADN04000014.1 5941293-5944228 c
184 FEATURES Location/Qualifiers
185 source 1..3685
186 /organism="Gallus gallus"
187 /mol_type="mRNA"
188 /db_xref="taxon:9031"
189 /chromosome="5"
190 /map="5"
191 /breed="Leghorn"
192 gene 1..3685
193 /gene="NOVA1"
194 /note="uncharacterized LOC423300"
195 /db_xref="CGNC:7484"
196 /db_xref="GeneID:423300"
197 CDS 95..1618
198 /gene="NOVA1"
199 /note="isoform 1 is encoded by transcript variant 1;
200 RNA-binding protein Nova-1; neuro-oncological ventral
201 antigen 1; NOVA alternative splicing regulator 1"
202 /codon_start=1
203 /product="RNA-binding protein Nova-1 isoform 1"
204 /protein_id="NP_001186641.1"
205 /db_xref="CGNC:7484"
206 /db_xref="GeneID:423300"
207 /translation="MMAAAPIQQNGTHTGVPIDLDPPDSRKRPLEAPPEAGSTKRTNT
208 GEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLI
209 QGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKS
210 SPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQE
211 RVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTA
212 EVLPTAAAAAGLLGHANLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGL
213 GLSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFALGSLAAAT
214 AATNGYFGAASPLAASAILGTEKSTDGSKDVVEIAVPENLVGAILGKGGKTLVEYQEL
215 TGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGVRAANPQKVG"
216 ORIGIN
217 1 cccttcctct tccttcctcc tcctcctccc ccttccctcc ctgccccccc aacaccgaag
218 61 ggaagagaca attctcctcc gagcagcagc aaacatgatg gcggcagctc ccatccagca
219 121 gaacgggact cacaccgggg ttcccataga cctggacccg ccggactccc ggaaaagacc
220 181 gctggaagcc ccccccgaag cgggcagcac caagaggacc aacacgggcg aggatggcca
221 241 atattttcta aaggtcctca tacctagtta tgctgctgga tctataattg ggaagggagg
222 301 acagacaatt gttcagttgc agaaagagac cggggccacc atcaagctgt ctaaatccaa
223 361 agatttttac ccaggtacta cggagcgcgt gtgtctgatc cagggaacag ttgaagcact
224 421 aaatgcagtt catggcttca ttgcagagaa gattcgagaa atgcctcaaa atgtggccaa
225 481 gacagagcct gtcagcatcc tacaacctca gaccactgtt aatccagacc gcatcaaaca
226 541 aacattgcca tcttccccaa ctaccaccaa gtcctctcca tctgatccca tgaccacctc
227 601 cagagccaat caggtaaaga ttatagttcc caacagcaca gcaggtctga taatagggaa
228 661 gggaggtgct acagtgaagg ctataatgga gcagtcaggg gcttgggtgc agctttccca
229 721 gaaacctgat gggatcaact tgcaagagag ggttgtcact gtgagtggag aacctgaaca
230 781 aaaccgaaaa gctgtcgaac ttatcatcca gaagatacaa gaggatccac agagtggcag
231 841 ctgtctcaat atcagttatg ccaatgtcac aggtccagtg gccaattcca atccaaccgg
232 901 atctccttat gcaaacactg ctgaagtgtt accaactgct gcagctgctg cagggctatt
233 961 aggacatgct aaccttgctg gagtggcagc ctttccagca gttttatctg gctttacagg
234 1021 caatgacctg gtggccatca cctctgcact taatacatta gccagctatg gatataatct
235 1081 caatacatta ggtttaggcc taagtcaggc agcagctaca ggggctttgg ctgcagcagc
236 1141 tgccagtgcc aacccagcag cagcagcagc caacttgttg gccacctatg cgagtgaagc
237 1201 ctcagccagt ggcagcactg ctggtggtac ggcggggaca tttgcattag gtagcctggc
238 1261 tgctgctact gctgcaacca atggatattt tggagctgct tctcccctag ctgccagtgc
239 1321 catcctagga acagaaaaat ccacagatgg atcaaaggat gtagttgaaa tagcagtgcc
240 1381 agaaaactta gttggtgcaa tacttggaaa aggagggaaa acattagttg aataccagga
241 1441 gttgactggt gcaaggatac agatctctaa aaagggagaa ttcgtacctg gcacaagaaa
242 1501 tcgcaaggta accattactg gaacaccagc tgcaacccag gccgcacagt atttaattac
243 1561 acaacggatc acatatgagc aaggagttcg ggctgccaat ccacagaaag tgggttgaga
244 1621 gcccctgtta aacatgagat tgttttaacc cctccttacc ctattttcaa gaaggatgta
245 1681 ctgtactttg cagaagtgaa gtttttctgt tattaatata taattatgca aatgaatgcg
246 1741 actatgttga caatgtgtat atgtaaatat aatgtgtttt accagatgtt tcatagagag
247 1801 aattttttct tgatctgttt tgttctctat actttgcttg tgtatatttg tcagaggtgt
248 1861 ttctagtgta agatttaagc ctgccatttt accagcatta ttgtagttta atgattgaat
249 1921 gtagacaggg atatgcgtat agttttcagt attagttcta gataacacta aattaactac
250 1981 tgttaggttg ggtatggtgg ggtcagtgac ctaaaatgga gtgaggccaa agcactgtca
251 2041 tgtcagtctt acttcctgct tagggcacag tgaagtagga aacaatattt tgaaaataag
252 2101 ttttaaaatt taaaatgatc aaaaagcaat atagttgcat aaaagcactg taaaatattt
253 2161 aaaaaggtta aaactgtgga aaattatatt ggtaagttta cagatcaata aaagcacctg
254 2221 ttctccatct gaactagaca atggaaataa tgctgcatgc tggccatggc ccattcttca
255 2281 ccatttgtaa gttcaacaaa agttctcaca tggagtccca cctctaactg aggtttgtac
256 2341 atttgttttt aagcactgaa atcactactg atcccatcgc ctggccagta gaacagtcat
257 2401 tactccatta acattctcac tgtttagaca cataactgtg gtacagtgta ttggaaattt
258 2461 tatatacaaa aagtgaaagt gccaacaaat tattgatagc tgataatgtt tcattatctg
259 2521 caactgcttg ataagtatgt tgcattttaa gagcttataa ttgtgtataa tttgttaaca
260 2581 ctagaaacct attagtattg tgaatgtaga ttttactgtg aagctatctg tgatttagct
261 2641 gtttgctccc atgaaggagt ctttgcagca tggcgctagc agccaatgca gtttctaata
262 2701 ctcagtaatt tgcatgtttt gtggagcatt tttatgtcac caaccagaca gtatttcctg
263 2761 catgcttatt tagaagaggc agttttcctt gagaggtagt ggtctacctt tgccaggctt
264 2821 tttgacaggt catttcagag taagcctttg ttcccaagac ccaacaactg tcaccctctt
265 2881 ctgtacctct cctgagtgcc aactgcccag gccattgacc caccatctgt taacctctga
266 2941 gtttgcccgc tcaaggccac tcataggggc atccataacc aagcacctcc tcatgctgtg
267 3001 catgcagtct taaattcaat ggacaaaaat aaaatgctgg ctacctctgg atcatctggc
268 3061 tgagcaactg aatttcaaaa gagaattact tccatctcaa cttcaaccca ttgattacgt
269 3121 ccatcctagc aagctaaatg gcatcccagc tgctcctttc tgtgcaacca attaaagaac
270 3181 aatgagtgtg atgctccatg tctgaatttc gtccagcctc tctctgaact gtgatctttg
271 3241 tcctcatgaa ctttcccttt tgttcattga actatatgga ctcttcattt catattgatt
272 3301 tactgtgcaa tttacttttg gacattgaga acttgaaata attccctgat cccttccccc
273 3361 ttcactatta ataactcatt tctgtcaaac tgtaagagta gactcatttt ttttagtttt
274 3421 taacattgga ttgttatttc atttagagtt ctctatctct aaatatttaa tttagagaat
275 3481 gattaaaaag ggaatgatat gcttgtttaa aatgaaagag aaaagctgta gtaaactgtg
276 3541 ttacttggta atgactattt atcgtcgata ctctgtagct gtgtaagttt tgacaaatag
277 3601 tgtatctcgt gaaatcagtg gttagcattg ccgctattat atttactcat tttatcatta
278 3661 taaatgtgct tagttcatca tgtag
279 //
280
281 LOCUS NM_001030697 4759 bp mRNA linear VRT 24-JAN-2017
282 DEFINITION Gallus gallus phosphoinositide-3-kinase regulatory subunit 5
283 (PIK3R5), mRNA.
284 ACCESSION NM_001030697 XM_415588
285 VERSION NM_001030697.1
286 KEYWORDS RefSeq.
287 SOURCE Gallus gallus (chicken)
288 ORGANISM Gallus gallus
289 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
290 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
291 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
292 Phasianidae; Phasianinae; Gallus.
293 REFERENCE 1 (bases 1 to 4759)
294 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
295 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
296 P, Hayashizaki Y and Buerstedde JM.
297 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
298 gene function analysis
299 JOURNAL Genome Biol. 6 (1), R6 (2005)
300 PUBMED 15642098
301 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
302 NCBI review. The reference sequence was derived from AJ720866.1.
303 On Aug 8, 2005 this sequence version replaced gi:50757638.
304
305 ##Evidence-Data-START##
306 Transcript exon combination :: AJ720866.1 [ECO:0000332]
307 RNAseq introns :: mixed/partial sample support
308 SAMEA2201357, SAMEA2201358
309 [ECO:0000350]
310 ##Evidence-Data-END##
311 FEATURES Location/Qualifiers
312 source 1..4759
313 /organism="Gallus gallus"
314 /mol_type="mRNA"
315 /db_xref="taxon:9031"
316 /chromosome="18"
317 /map="18"
318 /breed="Leghorn"
319 gene 1..4759
320 /gene="PIK3R5"
321 /note="phosphoinositide-3-kinase regulatory subunit 5"
322 /db_xref="CGNC:14629"
323 /db_xref="GeneID:417319"
324 misc_feature 91..93
325 /gene="PIK3R5"
326 /note="upstream in-frame stop codon"
327 CDS 100..2745
328 /gene="PIK3R5"
329 /note="PI3-kinase regulatory subunit 5;
330 phosphoinositide-3-kinase, regulatory subunit 5, p101"
331 /codon_start=1
332 /product="phosphoinositide 3-kinase regulatory subunit 5"
333 /protein_id="NP_001025868.1"
334 /db_xref="CGNC:14629"
335 /db_xref="GeneID:417319"
336 /translation="MQHTTCTEDRIYHALERCLHGLSRDAVSSRWAAGLCLNCWSLQE
337 LVSRDAGNYLILVEKILGKAREVQEKCDYDLVMPLALLFYYAVLYAPHIPPDSELLLK
338 AASIYHSFLTWPVPYCDVFRELLTFISDELKAPGISFQRLVRTEQGLPVKNYQSSTVT
339 VLLLNRSEVQSEFLSIAEKLSSTEPPRHATLVLLLEHLYQVTFGTRCDLGSLHHLLKA
340 KTLEELSEIYTSAAEAQEIAAASSDPVLARERLQSALRDIAGAAALPTIAGDAQPRRL
341 QPIPIPTSRCYTYSWDQDNFDVLNDVLSKECSVVEPVASENEEDEEEEEEDVETDGCS
342 PERDSLLSPISSISKDSVYSALSEDGPKHSCVSLFSSSKDSISELTVVSKKSLRSFVS
343 SLKDCMDSGYAEDSDESSLDTLGRPELKVEKTHHKYRHTLTNKIYKLFKSKSQLVLRR
344 DLKDCVDTGSLPLRRAESLCHPQAKPRIPARSRRAHSLPQHGLGQKLQTPQTPQLLSL
345 PRRPFLSYDEDAKVATMRVVVFGSDRISGKVARAYSNLRLKESTCPTLTRYFKLQFFY
346 VPVKRSCLLPAALLMHPPPSPSDLQLRALAQAEPTLAGAESSTNDISHYIGMLDPWYE
347 RNVLGLMNLPMDVLCQSAKPEAEPQEDSREQLPILADMILYYCRFATRPVLLQLYQTE
348 LTFIGGEKMTEVFIHSLELGHSAATRAIKASGPGSKRLGIDGDREAIPLTLQIAYSKT
349 AISGRSQWNDVEKVCTSVNLSKACKKYEELASKTECLNLTMTEVVKRQNSKSKKSFNQ
350 LSVSQIKVDKVQIIGVQSSFAVCLDQDEQKILQSVTRCEISVCYRPRDSDPLALRRSS
351 LTPQDPSEFHSLLCLPISTFSGALP"
352 misc_feature 166..396
353 /gene="PIK3R5"
354 /experiment="experimental evidence, no additional details
355 recorded"
356 /note="propagated from UniProtKB/Swiss-Prot (Q5ZIB8.1);
357 Region: Heterodimerization. {ECO:0000250}"
358 misc_feature 2068..2370
359 /gene="PIK3R5"
360 /experiment="experimental evidence, no additional details
361 recorded"
362 /note="propagated from UniProtKB/Swiss-Prot (Q5ZIB8.1);
363 Region: Interaction with G beta gamma proteins.
364 {ECO:0000250}"
365 ORIGIN
366 1 gccgcccggc ggggagcggc gcggagcgga gcccggcggg gcgcggcgag gatgggcagg
367 61 gggccccggc ggctgccgcc ctccaggaga tgaattaaaa tgcagcacac cacgtgcaca
368 121 gaggacagga tctatcatgc actggagaga tgtctgcacg ggcttagcag agatgctgtc
369 181 tccagcagat gggctgcagg gctgtgcctg aactgctgga gcctgcagga gctggtgagc
370 241 agggatgcag gtaactacct catcctggtg gagaaaatcc tcggcaaggc cagggaggtg
371 301 caggagaagt gtgactacga cctggtgatg cccctggccc tgcttttcta ctacgcggtc
372 361 ctctatgctc cccacatccc accagactcc gagctgctcc tgaaagctgc cagcatctac
373 421 cacagcttcc tcacctggcc cgtgccctac tgcgacgtct tccgtgagct gctcaccttc
374 481 atcagtgatg agctcaaggc gccagggatt tccttccaga ggttggtgag gacggagcag
375 541 gggctgcctg tgaagaacta ccagagctcc actgtgacgg tgctgctgct gaaccgctcc
376 601 gaggtgcaga gtgagttcct ctccatcgca gagaagctga gcagcactga gcccccccgg
377 661 cacgccacgc tcgtcctgct gctggagcac ctctaccagg tcaccttcgg cacccgctgc
378 721 gacctgggca gcctgcacca cctcctgaag gccaagacac tggaagagct ctctgagatc
379 781 tacaccagcg ctgctgaagc gcaggagatc gcagccgcca gcagtgaccc tgtgttggcc
380 841 cgggagcggc tgcagagcgc tctgcgggac attgccgggg cagcagcact tcctaccatt
381 901 gcaggagatg cgcagccccg caggctgcag cccatcccca tccctacttc gcgctgctac
382 961 acctacagct gggaccagga taactttgat gtcctcaatg atgtcctcag caaggagtgc
383 1021 agtgttgttg agcctgtggc ctcagagaat gaggaggacg aggaagagga ggaggaggat
384 1081 gtggaaacag acggctgttc cccagagagg gactcgctgc tgtcccccat ctcctccatt
385 1141 tccaaggact ccgtgtactc agcgctgtca gaggatggac ccaagcactc ctgcgtgtcc
386 1201 ctcttcagca gctccaagga ctccatctca gagctgacgg tggtctccaa gaagtccttg
387 1261 aggtcttttg tctccagcct gaaggactgc atggacagcg ggtacgcaga ggacagcgac
388 1321 gagagctccc tggacacgct tgggcggccg gagctgaagg tggagaagac ccaccacaaa
389 1381 tacagacaca cgctgaccaa caagatctac aagctcttca agagcaaaag ccagctggtc
390 1441 ctgaggagag acctgaagga ctgtgtggat acaggctcgc tcccactgcg ccgtgctgag
391 1501 agcctgtgcc acccccaggc caagccccgc atcccggcac gctcccggcg cgctcactca
392 1561 ttgccacagc acgggctggg ccagaagctg cagaccccgc agaccccgca gctgctcagc
393 1621 ctgccccgcc ggcccttcct cagctacgac gaggatgcca aagtggccac catgcgcgtg
394 1681 gtggtcttcg gctccgaccg catctcaggg aaagtagccc gagcctacag caacctgagg
395 1741 ctgaaggaga gcacctgccc tacactgaca aggtacttca agctgcagtt tttctacgtc
396 1801 cccgtgaaga ggagctgcct gctgccagca gccctgctga tgcatcctcc tccatcccca
397 1861 agcgacctgc agctccgcgc cttggcacag gcggagccca ccttggctgg ggcggagagc
398 1921 agcaccaatg acatctccca ctacatcggc atgttggacc catggtacga gcggaacgtt
399 1981 ctggggctga tgaacctgcc catggatgtc ctgtgtcagt ctgccaagcc tgaggctgag
400 2041 ccccaggagg actcccggga gcagctgccc atcctggccg acatgatcct ctactactgc
401 2101 cgctttgcca cacgccccgt cctgctgcag ctctaccaga ccgagctcac cttcataggg
402 2161 ggggagaaga tgaccgaagt cttcatccac tccctggagc tgggccactc ggcggccacg
403 2221 cgggccatca aggcgtcagg tccgggcagc aaaaggctgg gcatagatgg agacagagaa
404 2281 gcaatcccac taacactaca gatcgcctac agcaagacag ccatcagtgg aaggagtcag
405 2341 tggaacgatg ttgagaaggt ctgcacatct gttaacctca gcaaagcctg caagaagtac
406 2401 gaagagctgg cctcgaagac agagtgtctc aacttgacca tgacagaggt ggttaaaagg
407 2461 caaaactcca aatccaaaaa aagtttcaat cagctcagtg tgtcccagat caaggtagac
408 2521 aaagtccaga ttattggtgt ccagtcctcc tttgccgtgt gcctggatca ggatgagcag
409 2581 aagatcctgc agagtgtaac caggtgtgag atctccgtgt gctacagacc cagggacagc
410 2641 gatccccttg cactgagaag gtcctctttg actccccagg acccctccga gtttcattct
411 2701 ctcctgtgtt tacccatttc caccttcagt ggagcactgc catagaagaa ccctgtgccc
412 2761 tcatcggacc aggcatgcat tcaacgccaa aatgaagctg tcctgctgga ggccagccac
413 2821 gcttgtccaa gacatcctgt gatctgaagc catagtgtgg tgattgaact gctcctgttg
414 2881 tgagcttagc ccgtccttgg ggaatgctgt tagtgtcagg ctctggtaca gctcaagatt
415 2941 ccctgggagg aaagtgagat ctccacctgg ttcagtaggc tgccaacacc taactgagag
416 3001 gacaaggcaa agacagcgac gttttcctgc cagcaaatgg tgctgtggcc gtacttagtg
417 3061 actgcaaagc ccatgtgatg ctggggagaa tgcattctgg aaagtgaatg tctttggctg
418 3121 agtggtggca ggtggagctg aaaaccaccc aaccaatgtt ctgatgacat ttcacttgca
419 3181 agaagccagg gatgctgggg atggttctct ggggataggg acaggctttc tcaggatttg
420 3241 ctttaaatta tgagagatgg gtgtcttgca gagaaacagc acaatgcaga atgacccaac
421 3301 tggggcccag aaagagccca gcatgagtta cagactgctc tttgtgttcc agtgaatcca
422 3361 gtgcaatagg ccataccagg gcatgggcag ctcatcacac gtatgtgttg gctgtaaatg
423 3421 caggacctgc aggagataac cttccacttc ctgcagagtt tcagggttca tccaggaggg
424 3481 agatggagtt gctgttcagc tggtgttctt gcatcctgct caccagtgca cgagtgctag
425 3541 agacatccca gaggctgaat gctcaatagt tgcttgagat agagcaggaa ccatgctcac
426 3601 actcagagga gggagggaag tactgggtaa agtgctagca ttgccttgcc tcacctcagg
427 3661 gtgtggcttt ggtagagaag gacccagcag caataacact agtgatgctt gcaggcaatg
428 3721 atagattctg agatcccctt tccactgcaa agagaggttc cccccccgac tctttcttct
429 3781 ctctgtgagg ccttaggtac agaaatctgc aatagttggg agcttttaga agtattttga
430 3841 cctcaggaac aataagtgag gctggaagtg ccttgcttgg tttcacagcc ctcaggttgt
431 3901 ttctcattag ctggtggttg cactaacgat agctggcaga agagcacgct gcctgttgca
432 3961 ggctaggagt atgccaacac caaggatgtg ctccctggga tgcatctgga agggacctcc
433 4021 atcctgcagg gctcggccac ggtgagctca gctccatctg aatccatggg tcctccagca
434 4081 gatggggctt gggcagcttt ggcactcatt ggagtgagac tgggctccgt cccaagggct
435 4141 gcgggcacag cagctgtgtt ccccttggtg gtgacattgg aggaagcact tcagcatttt
436 4201 aagtccagca ggctccaagg accgggagca gattttcaac gagttttccc attgactttt
437 4261 cacatttccc agacaggttt gtgtgcgtcg tctcaaatgg ggctgaaatt tgacagctgt
438 4321 tttttttttt ttctctttag ttgttgttcg atccattaaa atagcacctt atcctgtcaa
439 4381 aacagtgcta tttgtgatcc ctgtatccgt ggctaaatat atccctgccg ctgtcggggg
440 4441 cgcaaagctc tttggtctca gctggcccca tagaactgca ggagaagagt ttccatgctg
441 4501 gggaggaaaa acaagcacac cctctgggga ctcgtaatcc tggctcattt tctgacctct
442 4561 gatgctttct ggaaatgaaa agaaggaagt ggaaggttcc ttcaggccgt ccttgtacat
443 4621 atgtgcagcc ttaccaaacc tgtgtcacgt ctgtgctgat ctgtaaaata gcattcaaag
444 4681 gactttttat gtcactgcga ggtattaaag gaggatttat ttcgagtaaa aaaaaaaaaa
445 4741 aagaaaaaaa aaaaaaaaa
446 //
447
448 LOCUS NM_001277797 2943 bp mRNA linear VRT 16-JAN-2017
449 DEFINITION Gallus gallus family with sequence similarity 179 member A
450 (FAM179A), mRNA.
451 ACCESSION NM_001277797 XR_140068
452 VERSION NM_001277797.1
453 KEYWORDS RefSeq.
454 SOURCE Gallus gallus (chicken)
455 ORGANISM Gallus gallus
456 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
457 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
458 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
459 Phasianidae; Phasianinae; Gallus.
460 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
461 NCBI review. The reference sequence was derived from
462 AADN04000127.1.
463 On Apr 20, 2013 this sequence version replaced gi:363731307.
464
465 Sequence Note: The RefSeq transcript and protein were derived from
466 genomic sequence to make the sequence consistent with the reference
467 genome assembly. The genomic coordinates used for the transcript
468 record were based on alignments.
469
470 ##Evidence-Data-START##
471 RNAseq introns :: single sample supports all introns SAMEA2201368,
472 SAMEA2201377 [ECO:0000348]
473 ##Evidence-Data-END##
474 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
475 1-28 AADN04000127.1 3133910-3133937
476 29-163 AADN04000127.1 3134765-3134899
477 164-358 AADN04000127.1 3135468-3135662
478 359-582 AADN04000127.1 3135946-3136169
479 583-755 AADN04000127.1 3137685-3137857
480 756-802 AADN04000127.1 3139096-3139142
481 803-993 AADN04000127.1 3140932-3141122
482 994-1153 AADN04000127.1 3141956-3142115
483 1154-1318 AADN04000127.1 3143062-3143226
484 1319-1460 AADN04000127.1 3145135-3145276
485 1461-1566 AADN04000127.1 3146497-3146602
486 1567-1802 AADN04000127.1 3148273-3148508
487 1803-1961 AADN04000127.1 3149677-3149835
488 1962-2079 AADN04000127.1 3150800-3150917
489 2080-2183 AADN04000127.1 3151823-3151926
490 2184-2382 AADN04000127.1 3153262-3153460
491 2383-2599 AADN04000127.1 3154431-3154647
492 2600-2686 AADN04000127.1 3159686-3159772
493 2687-2943 AADN04000127.1 3162103-3162359
494 FEATURES Location/Qualifiers
495 source 1..2943
496 /organism="Gallus gallus"
497 /mol_type="mRNA"
498 /db_xref="taxon:9031"
499 /chromosome="3"
500 /map="3"
501 /breed="Red Jungle Fowl"
502 gene 1..2943
503 /gene="FAM179A"
504 /note="family with sequence similarity 179 member A"
505 /db_xref="CGNC:51462"
506 /db_xref="GeneID:421296"
507 CDS 1..2943
508 /gene="FAM179A"
509 /codon_start=1
510 /product="crescerin-2"
511 /protein_id="NP_001264726.1"
512 /db_xref="CGNC:51462"
513 /db_xref="GeneID:421296"
514 /translation="MATEDNFAAAKYDAPVAVYCGSVPKVKPRCRALRGGSIDSNLQL
515 CGSRWITEEGGAISSLEGWGSKACVQDLDAGARGDLSPLPHPQEREVSSAALETAQIK
516 DKLKKRRMSEGLLAPLRGLTESSDLKGVALKPAISRSASQRLLVTSKPVPPIQNSLPP
517 PEPSWMSNGEQELREDGTTDHGGSEGNHKELTSEASLQPLYCGDEERKKSLGVALIPP
518 IPKSARPSDGDPGSTEIPLPSSQQLISQEPLEMRPRSGSRTEEKTPASLELRTLEPIL
519 PIPQHRVACSMKSVRHVYEPVPPLADLPLSQAKETDHLSSPCLLKDDDWKDSNGRIHI
520 TISKSAQEKMRQKQTREMELLLREREKERAKEKSLQFSTWSADPGGVAGEDFGSPHIN
521 GALSISSSTSNACRSSIGATLRKRVNRPSLPSIPVISQDTSFPRHSSANSLPAIALGC
522 PEWGEEPECGDAGETRPFSHPEQGLLDALAWLNSSDWQLKGKGLFSIRRLAICHSEIL
523 LSRLHDVTLAVTKEVNNLRSKVSRFAINTLGELFRIMKKHMDQEVEEVARALLQKTGD
524 SSEFIQKAADRSLGIMVGSVTPARAMAALLAGGVNHRNVLVRRYTAEHLLTVMEQIGA
525 EKLLSGTRDSVELLVHMLVKLAQDCNQDTRFYGRKMLNILMSHPKFDGHLKQFLPSRD
526 LQVVMATIKQKGVEDHMPEPPSAKGRRESRNSGLMMSQENLPSHEGSSSDVLLLPHQT
527 VRRTSLRTVEEIEQLKELNNLLSAKEFQTRIEGVMLLLDHCKSNPQLISANIVQIFDV
528 FVLRLQDSNKKVKQQSLEALASVIPILRDTLHPVLVSLVAAVTDNLNSKHTGIYAAAV
529 KVLEASIAHLDNALLLQALAHRVRFLSGRAMQDVTEHLSVLVASVYPRKAHVVERYAL
530 PVLWFFLSNMIGNGVLPGRSSNVRAAVTKLAKSLHQEMGSSLKELAASQPPHVAKHLW
531 HVLDLDGQ"
532 ORIGIN
533 1 atggcaacag aagataattt tgcagcagct aagtatgatg ctccagttgc tgtctactgt
534 61 gggagcgtcc caaaagtcaa acccagatgc agagctctgc ggggtggaag cattgattca
535 121 aacttgcagc tttgtggcag cagatggatt actgaagaag gaggggccat ctcttccctg
536 181 gagggctggg gcagcaaggc ttgtgtgcag gacctcgatg ctggggctag aggtgatctc
537 241 tccccccttc ctcaccccca ggaaagggag gtgagcagtg ctgccctgga aactgctcag
538 301 atcaaggaca agctgaagaa gaggaggatg tctgagggcc tgttagcccc actgagaggc
539 361 ctgactgaaa gcagtgacct gaagggggtt gccctgaagc ctgcaatttc taggtcagcc
540 421 tcccagaggc tcctggtaac ctccaagcct gtgcccccca tccagaacag ccttcctccc
541 481 ccagagccca gctggatgag caacggggag caggagctca gggaggacgg aacaacagat
542 541 catggtggca gtgaaggcaa ccacaaagaa ctgacatcag aggcttcatt gcagcctctg
543 601 tactgtggtg acgaggaaag gaagaagtca ctgggggtgg ctttgattcc tcccatcccc
544 661 aagtcagcaa gaccatctga cggggatcct ggcagcactg aaattcctct tccaagctca
545 721 cagcagctga tttctcaaga gcccctggag atgaggccaa gatcaggcag caggacagaa
546 781 gagaagaccc ctgcgtctct ggaactccgg actctggaac ccatcttgcc tattccccag
547 841 catcgtgttg cctgtagcat gaagtctgtg aggcatgtgt atgaacccgt gcccccattg
548 901 gcagatctgc ccctcagcca ggccaaagag acggatcacc tttcaagtcc ttgccttctg
549 961 aaggacgatg actggaagga cagcaatgga aggatccata tcaccatatc caagtctgct
550 1021 caggagaaaa tgcgccagaa gcaaacaaga gagatggagc ttttgctcag agagagggag
551 1081 aaagagagag caaaggagaa gtcattgcag ttctccactt ggagcgctga ccctgggggt
552 1141 gtggctggag aagactttgg ctcaccgcac atcaatgggg cactctccat ctcctccagc
553 1201 accagcaatg cgtgcaggtc aagcattggt gccacgctga ggaagcgggt caacaggccc
554 1261 tccttgccca gcatccctgt catcagccag gacaccagct tcccacggca ctcttcagca
555 1321 aactcactgc cagccattgc tttgggctgc ccggaatggg gagaggagcc tgagtgtggg
556 1381 gatgccgggg aaaccagacc cttctctcat ccagagcagg ggctgctgga tgcacttgcg
557 1441 tggctcaaca gcagtgactg gcagctgaag gggaaaggac tcttcagcat cagacgcttg
558 1501 gccatctgcc attcggaaat cctcctcagt agacttcatg atgttacctt ggcagttacc
559 1561 aaagaggtga acaacctccg ctcgaaggtg tctcgctttg caatcaacac tcttggagag
560 1621 ctcttcagga tcatgaagaa acacatggac caggaggtag aggaggtcgc tcgggccttg
561 1681 ctgcagaaga cgggggactc cagcgagttc attcaaaaag cagctgatcg atccctgggg
562 1741 attatggtgg ggagtgtgac tcctgcaaga gcaatggctg ctctcctggc tggtggggtc
563 1801 aatcaccgca atgtcctggt gcggaggtac acagcagagc acctactgac tgtgatggag
564 1861 cagattggag ctgaaaagct cctgtcaggc acgcgtgaca gcgtcgagct tctcgttcac
565 1921 atgctggtca agcttgctca ggactgcaat caggatacaa ggttttatgg aaggaagatg
566 1981 ctgaatatat tgatgagtca tccaaaattt gatggacatt tgaaacaatt tctcccctcg
567 2041 cgtgacttgc aagttgttat ggcaacaatt aagcagaaag gggtagaaga ccatatgcct
568 2101 gaacctccat ctgccaaagg ccgcagggag tccaggaaca gtggtttgat gatgtcccag
569 2161 gaaaacttgc cttctcatga agggtccagc tctgatgtcc tcctcttacc ccatcagaca
570 2221 gttcggcgca catcgcttcg cactgtggaa gagattgaac aactcaaaga gcttaacaat
571 2281 ctcctgtcag caaaggagtt tcagacacga atagagggag tcatgctcct cctagatcac
572 2341 tgcaaaagca acccccagct catctcagcg aatattgtcc agatttttga tgtttttgtc
573 2401 ctgagacttc aggattccaa taagaaagtg aagcagcagt cactggaagc tctggcttca
574 2461 gttataccca ttctcagaga caccttacac ccagtgctgg tctctttggt agcagcagtc
575 2521 acagacaacc tgaactcaaa gcatacaggg atttatgctg cggctgtgaa ggtgttggaa
576 2581 gcatccattg ctcacctaga caacgcatta ctgctgcaag cgttggccca ccgcgtgcgt
577 2641 ttcctcagcg gccgagccat gcaggacgtc acggagcacc tctcagtgct tgtggcatct
578 2701 gtttatcccc ggaaagccca cgtggtcgaa cgctacgccc tgcccgtgct ctggttcttc
579 2761 ctgagcaaca tgatcggaaa tggtgtcctg cccgggcgaa gcagcaatgt cagggctgca
580 2821 gtcaccaagc ttgccaagag cctccaccaa gagatgggct ccagcctcaa ggagctcgct
581 2881 gccagccagc ctccgcacgt ggcaaaacac ctctggcacg ttttggacct ggatggtcag
582 2941 tga
583 //
584
585 LOCUS NM_001184757 468 bp mRNA linear VRT 13-JAN-2017
586 DEFINITION Gallus gallus phospholipase A2 group X (PLA2G10), mRNA.
587 ACCESSION NM_001184757 XM_414738
588 VERSION NM_001184757.1
589 KEYWORDS RefSeq.
590 SOURCE Gallus gallus (chicken)
591 ORGANISM Gallus gallus
592 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
593 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
594 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
595 Phasianidae; Phasianinae; Gallus.
596 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
597 NCBI review. The reference sequence was derived from GU474518.1.
598 On May 18, 2010 this sequence version replaced gi:118097684.
599
600 ##Evidence-Data-START##
601 Transcript exon combination :: GU474518.1 [ECO:0000332]
602 RNAseq introns :: mixed/partial sample support
603 SAMEA2201357, SAMEA2201359
604 [ECO:0000350]
605 ##Evidence-Data-END##
606 FEATURES Location/Qualifiers
607 source 1..468
608 /organism="Gallus gallus"
609 /mol_type="mRNA"
610 /db_xref="taxon:9031"
611 /chromosome="14"
612 /map="14"
613 gene 1..468
614 /gene="PLA2G10"
615 /note="phospholipase A2 group X"
616 /db_xref="CGNC:50254"
617 /db_xref="GeneID:416425"
618 CDS 1..468
619 /gene="PLA2G10"
620 /EC_number="3.1.1.4"
621 /note="group 10 secretory phospholipase A2"
622 /codon_start=1
623 /product="group 10 secretory phospholipase A2 precursor"
624 /protein_id="NP_001171686.1"
625 /db_xref="CGNC:50254"
626 /db_xref="GeneID:416425"
627 /translation="MKNPCQLPLVLLLLAAVYRGTLGEAHVRNRRGILELAGAIRCTT
628 GRSPFAYLRYGCYCGLGGRGWPKDRVDWCCFNHDCCYGKAEQAGCHPKIESYHWECED
629 NTAVCESLEDKCQKMACECDREAAKCFSKAPYHTKYLLWPDMMCGEVQPLCRY"
630 sig_peptide 1..69
631 /gene="PLA2G10"
632 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
633 ORIGIN
634 1 atgaaaaatc cttgtcagct gccgctcgtg ctgctgctgc tcgccgccgt ttatagaggc
635 61 accttggggg aagctcatgt taggaaccga agaggaattc ttgaattagc tggagccatt
636 121 agatgcacta cagggcggtc tccttttgcc tacctacgtt acggatgcta ctgcggcctg
637 181 ggaggaaggg gatggcccaa ggacagagtg gactggtgct gctttaacca cgactgttgc
638 241 tatggtaagg cagagcaagc aggctgtcac cccaagatag aaagttacca ctgggaatgc
639 301 gaggacaaca ctgctgtatg tgaatcacta gaagacaaat gtcaaaaaat ggcatgtgaa
640 361 tgtgatcgtg aagctgccaa atgtttttct aaagctccct accataccaa gtacctcctg
641 421 tggccagata tgatgtgtgg tgaggttcaa cctttgtgta gatattaa
642 //
643
644 LOCUS NM_205038 2046 bp mRNA linear VRT 13-JAN-2017
645 DEFINITION Gallus gallus peripherin 2 (PRPH2), mRNA.
646 ACCESSION NM_205038
647 VERSION NM_205038.1
648 KEYWORDS RefSeq.
649 SOURCE Gallus gallus (chicken)
650 ORGANISM Gallus gallus
651 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
652 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
653 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
654 Phasianidae; Phasianinae; Gallus.
655 REFERENCE 1 (bases 1 to 2046)
656 AUTHORS Weng J, Belecky-Adams T, Adler R and Travis GH.
657 TITLE Identification of two rds/peripherin homologs in the chick retina
658 JOURNAL Invest. Ophthalmol. Vis. Sci. 39 (2), 440-443 (1998)
659 PUBMED 9478005
660 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
661 NCBI review. The reference sequence was derived from AF031238.1.
662
663 ##Evidence-Data-START##
664 Transcript exon combination :: AF031238.1 [ECO:0000332]
665 RNAseq introns :: mixed/partial sample support
666 SAMEA2201381, SAMEA2812695
667 [ECO:0000350]
668 ##Evidence-Data-END##
669 FEATURES Location/Qualifiers
670 source 1..2046
671 /organism="Gallus gallus"
672 /mol_type="mRNA"
673 /db_xref="taxon:9031"
674 /chromosome="3"
675 /map="3"
676 gene 1..2046
677 /gene="PRPH2"
678 /gene_synonym="CRDS1; peripherin-2; RDS"
679 /note="peripherin 2"
680 /db_xref="CGNC:49540"
681 /db_xref="GeneID:395899"
682 misc_feature 182..184
683 /gene="PRPH2"
684 /gene_synonym="CRDS1; peripherin-2; RDS"
685 /note="upstream in-frame stop codon"
686 CDS 272..1336
687 /gene="PRPH2"
688 /gene_synonym="CRDS1; peripherin-2; RDS"
689 /note="retinal degeneration, slow; retinal degeneration
690 slow protein; photoreceptor outer segment membrane
691 glycoprotein 1; peripherin 2 (retinal degeneration, slow)"
692 /codon_start=1
693 /product="peripherin-2"
694 /protein_id="NP_990369.1"
695 /db_xref="CGNC:49540"
696 /db_xref="GeneID:395899"
697 /translation="MALLKVKFNQKKRVKLAQGLWLMNWFSVFAGIIVFSMGLFLKIE
698 LRKRSEVMDNSESHFVPNSLILMGILSCAFNGFAGKICYDSLDPAKFAKWKPLLKPYL
699 ALCFFFNILLFFVALICFLMRGSLESTLAQGLKNSMKFYRDTDTPGRCFMKKTIDMLQ
700 IEFKCCGNNGFKDWFEIQWISNRYLDFSSKEVKDRIKSNVDGRYLVDGVPFSCCNPSS
701 PRPCIQYQVTNNSAHYSYDYQTEELNLWGRGCREALLHYYSSMMSSMGAVVLLVWLFE
702 MSVMVGLRLLHTSLESIANPEDPECESEGWILENSLKDTLKSALESLKKIGKFNQVEA
703 GAEGAEGEEAGKTPAITTVS"
704 misc_feature 344..400
705 /gene="PRPH2"
706 /gene_synonym="CRDS1; peripherin-2; RDS"
707 /experiment="experimental evidence, no additional details
708 recorded"
709 /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
710 transmembrane region"
711 misc_feature 455..511
712 /gene="PRPH2"
713 /gene_synonym="CRDS1; peripherin-2; RDS"
714 /experiment="experimental evidence, no additional details
715 recorded"
716 /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
717 transmembrane region"
718 misc_feature 569..640
719 /gene="PRPH2"
720 /gene_synonym="CRDS1; peripherin-2; RDS"
721 /experiment="experimental evidence, no additional details
722 recorded"
723 /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
724 transmembrane region"
725 misc_feature 1064..1141
726 /gene="PRPH2"
727 /gene_synonym="CRDS1; peripherin-2; RDS"
728 /experiment="experimental evidence, no additional details
729 recorded"
730 /note="propagated from UniProtKB/Swiss-Prot (O42281.1);
731 transmembrane region"
732 ORIGIN
733 1 tcctttgctt ggaaggaacc accagaaata gttgtaggtg ctaattgccc actattctta
734 61 ctaatgtgaa tttgtgaatt tggacctttg aatatctact tgcttgaacc gaagcgtggg
735 121 gagctcaaga tggagggacc gtgcagcact tcgcttcggg ctgcatcagc cggagctttt
736 181 ctaaacgcct gaatggttct ttctcgaatc gcttacacgg agaagagggg ttcaggctgc
737 241 aaaagctttc agcgtctcac gtattgcgac gatggcactg ctgaaagtca aattcaacca
738 301 gaagaaacgg gtaaaactag cccaggggct atggctcatg aactggtttt cagtctttgc
739 361 tggaatcatc gtttttagca tggggttgtt cctcaagatt gagctccgga agcgaagcga
740 421 agtgatggac aattctgaaa gccattttgt gcccaattct ttgatattga tgggtatatt
741 481 atcctgcgcc ttcaatggtt ttgctggcaa aatttgttac gattctctgg atcccgctaa
742 541 atttgccaag tggaagcctt tgctgaaacc ttacctggca ctatgtttct tcttcaacat
743 601 actcctcttc tttgtcgctc tgatttgctt tctcatgcgg ggctccctgg agagcacgct
744 661 ggctcagggg ctgaagaaca gcatgaagtt ctaccgggac acagacaccc ctggaaggtg
745 721 cttcatgaag aagacaatcg acatgctcca aatcgagttc aagtgctgtg ggaacaatgg
746 781 cttcaaagac tggtttgaaa ttcagtggat cagcaacaga tacctggact tcagctccaa
747 841 agaagtgaaa gatcgaatca aaagcaacgt tgatggacgg tacctggttg atggtgtccc
748 901 cttcagctgc tgcaacccca gctccccgag gccctgcatc cagtaccagg tcaccaacaa
749 961 ctcggctcac tacagctacg actaccagac ggaggagctc aacctctggg gccgtggctg
750 1021 ccgggaagcc ctcctgcact actacagcag catgatgagc tccatgggtg ccgttgtcct
751 1081 ccttgtctgg ctttttgaga tgtctgtgat ggttggcttg cgtcttttgc acacctctct
752 1141 ggaaagcatc gcaaatcctg aagaccctga gtgtgaaagt gaagggtgga ttctagagaa
753 1201 cagcctgaaa gacactctga agtctgcgct ggagagcttg aaaaagattg gtaagttcaa
754 1261 tcaggtggaa gcaggtgccg aaggggctga aggagaagaa gctgggaaga ctccagccat
755 1321 cacaacagtc agttgagctt ctaaatgatg cgaactctga tcagaggaat gaaaaaactg
756 1381 aggattgtga atacctactt tttaaaagct acgtatcaac catcagaata cacgtttcta
757 1441 cacacgctat cttttttatt attattatac atgcatacgg aaggatacag catagcgcac
758 1501 cttgggataa tgcatttatc ctctcagtga gtacaccaga ttcataactt ctgggggaaa
759 1561 atgaccccac taggactttc aatacttacg tgttccctta ccagggactg ctagcattaa
760 1621 aaagaaatca tcataattgt tggcatcaca ctgatccgtt ccatcttatc ttgaaattaa
761 1681 aagtggaatt tgaaatgtta gtattttttc tcaagttggc ttgccatcat acttgatgta
762 1741 cgttaaccta caaagacaaa tgtcttggtt ttctggagag taacgtgtta aaagtcaaag
763 1801 gaagaataat ttccagaagt gtatataata acctagtgtt tcgacaaacc tctcatataa
764 1861 tgtgtttttt ttttttttgt tgatgtgcta agcagtggta tttcctgctg tattcttaag
765 1921 atgtacttaa tagaacaaaa caaaaagtta ttctgagaac ttcagtacta aacaaaaatt
766 1981 gtaacttaag aacagagcaa gcatgaaaac aacaccaagg taagatttat gggttttgtt
767 2041 cttggg
768 //
769
770 LOCUS NM_204727 1598 bp mRNA linear VRT 13-JAN-2017
771 DEFINITION Gallus gallus protein phosphatase 1 regulatory subunit 12B
772 (PPP1R12B), mRNA.
773 ACCESSION NM_204727
774 VERSION NM_204727.1
775 KEYWORDS RefSeq.
776 SOURCE Gallus gallus (chicken)
777 ORGANISM Gallus gallus
778 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
779 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
780 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
781 Phasianidae; Phasianinae; Gallus.
782 REFERENCE 1 (bases 1 to 1598)
783 AUTHORS Zhang Y, Mabuchi K and Tao T.
784 TITLE Expression in insect cells and characterization of the 110 kDa
785 anchoring subunit of myosin light chain phosphatase
786 JOURNAL Biochim. Biophys. Acta 1343 (1), 51-58 (1997)
787 PUBMED 9428658
788 REFERENCE 2 (bases 1 to 1598)
789 AUTHORS Chen YH, Chen MX, Alessi DR, Campbell DG, Shanahan C, Cohen P and
790 Cohen PT.
791 TITLE Molecular cloning of cDNA encoding the 110 kDa and 21 kDa
792 regulatory subunits of smooth muscle protein phosphatase 1M
793 JOURNAL FEBS Lett. 356 (1), 51-55 (1994)
794 PUBMED 7988720
795 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
796 NCBI review. The reference sequence was derived from S74622.1.
797
798 ##Evidence-Data-START##
799 Transcript exon combination :: S74622.1 [ECO:0000332]
800 RNAseq introns :: mixed/partial sample support
801 SAMEA2201357, SAMEA2201358
802 [ECO:0000350]
803 ##Evidence-Data-END##
804 FEATURES Location/Qualifiers
805 source 1..1598
806 /organism="Gallus gallus"
807 /mol_type="mRNA"
808 /db_xref="taxon:9031"
809 /chromosome="26"
810 /map="26"
811 gene 1..1598
812 /gene="PPP1R12B"
813 /note="protein phosphatase 1 regulatory subunit 12B"
814 /db_xref="CGNC:195"
815 /db_xref="GeneID:395478"
816 misc_feature 391..393
817 /gene="PPP1R12B"
818 /note="upstream in-frame stop codon"
819 CDS 406..966
820 /gene="PPP1R12B"
821 /EC_number="3.1.3.53"
822 /note="21 kDa; protein phosphatase 1M regulatory subunit;
823 PP1M M21 subunit; protein phosphatase 1, regulatory
824 (inhibitor) subunit 12B"
825 /codon_start=1
826 /product="protein phosphatase 1 regulatory subunit 12B"
827 /protein_id="NP_990058.1"
828 /db_xref="CGNC:195"
829 /db_xref="GeneID:395478"
830 /translation="MSSLFTRSKEYTRSRKSQSDSPPSSPSPIAKTLRHERLSRLEAA
831 TTPATSDSYSDRASSRSSAYSRRENRLAALSSRAEEESNRDYKKLYESALSENQKLKS
832 KLQEAQLELADIKSKLEKAAQQKHEKTSDRSSMLEMEKREKRALERKLSEMEEEMKIL
833 TELKSDNQRLKDENGALIRVISKLSK"
834 ORIGIN
835 1 gtggtttggg tttgtttttt gactctttgg agagtcatct agtctagagg cactcagctg
836 61 ttcccccggc tcttcccatt gagctgggag tcctttcctc gtgcagcttt ttgggagtcc
837 121 tttcctcgtg cagctttggg aaggagcccc tggtcctgcg gctccggata ggagatgtcc
838 181 ctgcgtgggc actgcggaca ccacctcttc tgctcagacg aggaaccttt cagagcctca
839 241 gctccctctg cagcagatta atgcctaaaa tcatacacct gaactggcag ggtttaatta
840 301 ccagagctgc gaatagttta attagtttgt tctgaccttg gaaggaggac ctgcccagca
841 361 acgggagggc gcagctgtat tgctctgcgg tgacccagca gggccatgtc gtcgctgttc
842 421 accaggagca aggagtacac gcggagcagg aagtcccagt cagattcacc cccgtcctct
843 481 ccttccccga ttgcaaagac gctcagacat gaacgacttt ccaggttgga agcagctaca
844 541 acccctgcca ccagtgactc ctacagtgac cgtgcctcca gccgctccag tgcctacagc
845 601 cgcagagaga accgcctagc agccctcagc agcagggcag aagaggagag caacagggac
846 661 tataaaaagt tgtacgaaag cgccctgtct gaaaatcaga agctgaagtc aaaactgcaa
847 721 gaagcacagc tcgagctggc agacatcaaa tccaagttgg aaaaggcagc ccagcagaaa
848 781 cacgagaaaa cttctgaccg gtctagcatg ctggagatgg agaaaaggga gaagcgagct
849 841 ctggagcgga aactctctga aatggaggag gagatgaaga tactgacgga gctgaaatcg
850 901 gacaatcaaa ggctgaagga cgaaaacggg gctctcattc gtgtcatcag caaactctcc
851 961 aagtagggag ccgagctgca ggatgagggg cgcaccgctg agccctgccc cttcctcctg
852 1021 ccccacgcac agcaccgctg cagccggggg tcagcagcgc tcctccctgc ctggctggac
853 1081 gttccctttc tgccctttcc cccccgcatc gcacaccccg gccgttctgg tttcatttca
854 1141 gcatgttgtg gtatctcgga catttggctc gggggagatg aggaggatgc agagcggtgc
855 1201 cgagctgcca aaacttctcc ttccagcagc ccgcggtgtg cagcagggag ctgttctgtg
856 1261 caaagcgacg cccacggagc tggtgcagca aatccgtgcc ctctgcaggt gggagatgtg
857 1321 actgtgggct ggaactccgt ggacgtgcat cagcccatgt gcactgtgcg acttcggtac
858 1381 gatgcgatgc tacgaggaat ggcagcagag ctgattcctt cagcaggcgg ggacggctgc
859 1441 tctgcacaga gacctgcctg ctttttattt aatgtaacat agcagatctg gtgggtaagt
860 1501 gcccctcgtg tgcggctggt ggtggggtgc cgtgctacaa acccccgggg ctccctccaa
861 1561 gctcactgca ctcagcagca cctccccgaa ttcctaca
862 //
863
864 LOCUS NM_001031150 2596 bp mRNA linear VRT 11-JAN-2017
865 DEFINITION Gallus gallus rap1 GTPase-GDP dissociation stimulator 1 (RAP1GDS1),
866 mRNA.
867 ACCESSION NM_001031150 XM_420653
868 VERSION NM_001031150.2
869 KEYWORDS RefSeq.
870 SOURCE Gallus gallus (chicken)
871 ORGANISM Gallus gallus
872 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
873 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
874 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
875 Phasianidae; Phasianinae; Gallus.
876 REFERENCE 1 (bases 1 to 2596)
877 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
878 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
879 P, Hayashizaki Y and Buerstedde JM.
880 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
881 gene function analysis
882 JOURNAL Genome Biol. 6 (1), R6 (2005)
883 PUBMED 15642098
884 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
885 NCBI review. The reference sequence was derived from AJ719848.1.
886 On Jan 11, 2017 this sequence version replaced gi:71896682.
887
888 ##Evidence-Data-START##
889 Transcript exon combination :: AJ719848.1 [ECO:0000332]
890 RNAseq introns :: single sample supports all introns
891 SAMEA2201361, SAMEA2201363
892 [ECO:0000348]
893 ##Evidence-Data-END##
894 COMPLETENESS: complete on the 3' end.
895 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
896 1-2596 AJ719848.1 3-2598
897 FEATURES Location/Qualifiers
898 source 1..2596
899 /organism="Gallus gallus"
900 /mol_type="mRNA"
901 /db_xref="taxon:9031"
902 /chromosome="4"
903 /map="4"
904 /breed="Leghorn"
905 gene 1..2596
906 /gene="RAP1GDS1"
907 /note="rap1 GTPase-GDP dissociation stimulator 1"
908 /db_xref="CGNC:9282"
909 /db_xref="GeneID:422701"
910 misc_feature 79..81
911 /gene="RAP1GDS1"
912 /note="upstream in-frame stop codon"
913 CDS 220..2043
914 /gene="RAP1GDS1"
915 /note="RAP1, GTP-GDP dissociation stimulator 1"
916 /codon_start=1
917 /product="rap1 GTPase-GDP dissociation stimulator 1"
918 /protein_id="NP_001026321.1"
919 /db_xref="CGNC:9282"
920 /db_xref="GeneID:422701"
921 /translation="MDNLSDALKKLKITATDSTADSLEGCLDCLLQALAQNNMETSEK
922 IQKSGVLQVFASLLMPQSSCTAKVANIIAEVARNEFMRNPCVDAGLIPPLVQMLNCKD
923 QEVLLQTGRALGNICYDSHEGRSAVDHAGGAHIVVDLIRSLCSKTDPASEKLLTVFCG
924 MLMNYSNENDTLQSQLINMGVIPTLVKLLGIHCQNAALTEMCLVAFGNLAELESSKEQ
925 FAYTNIAEELVKLFKKQVEHDKKEMIFEVLAPLAENDVIKLQLVEAGLVECLLEIVQK
926 TVDSDKEDDVAELKTASDLMVLLLLGDESMQKLFEGGKGSVFQRVLSWIPSNSHQLQL
927 AGALAIANFARNDGNCTHMVDNGIVQKLMDLLDRHVEDGNVTVQHAALSALRNLAIPV
928 VNKAKMLSAGVAEAVLKFLRSEMPPVQFKLLGTLRMLIDAQAEAAEQLGKNAKLVERL
929 VEWCEAKDHAGVMGESNRLLSALIRHSKSKDVIRTIVQSGGIKHLVTMATSEHVIMQN
930 EALVALALIAALELVTAEKDLENAQLVQILHRLLSDDRSAPEIKYNSIVLVCALIGSE
931 SLQKEVQNMAFLEVVSKLRSHENKTVAQQASLTEQRLAVES"
932 ORIGIN
933 1 gcggcggcac ggcagggtgc cgccgggcgg gcggggtgtc tcccaggcgg ccttgcccgg
934 61 atgtgctacc ctgactcata gccgcgccgc acgcagcctc cgcgccgctg ccgcgctcgc
935 121 cccgctccgc tccgttccgc gcacagctct cccgcgcctc cccgagaggc ggcggtggct
936 181 ccgggaggag gggaaggagg aggaggccgc ggcgccacca tggataatct aagtgatgcc
937 241 ctgaaaaagc tgaagataac agccactgac agcacagcag atagcttgga gggatgcttg
938 301 gactgcctgc ttcaagctct ggcacaaaac aatatggaga caagtgaaaa aatccagaaa
939 361 agtggagttc ttcaggtgtt tgcgagtctg ttgatgccac agtcttcctg cacagcaaaa
940 421 gtagctaaca tcatagcaga agtagccaga aatgaattta tgcggaaccc atgtgtggat
941 481 gctgggttga tccctccttt ggtgcagatg ttaaactgca aagatcagga agtattgctg
942 541 caaacaggac gtgccctggg caatatatgc tacgatagcc atgagggcag gagcgcagtt
943 601 gaccatgcag gtggtgcaca tattgtagta gaccttataa ggtcgctgtg cagtaaaaca
944 661 gatccagcca gtgagaagct cttgactgtc ttttgtggca tgctgatgaa ctatagcaat
945 721 gagaatgata ccctgcaatc acagcttatc aatatgggtg ttattcctac actagtgaaa
946 781 ttgttgggta ttcattgcca aaatgcagct ctgacagaga tgtgccttgt tgcttttggc
947 841 aatttagcag aacttgagtc aagcaaagaa cagtttgcct acacaaacat tgctgaagag
948 901 cttgtgaaac tgttcaagaa gcaagtagag catgataaaa aagagatgat ctttgaagtt
949 961 ttggctcccc tagcagaaaa cgatgtcatt aagctgcagc tggttgaagc aggcttggtg
950 1021 gagtgcttac ttgagattgt ccagaagact gttgacagtg acaaagagga tgacgttgca
951 1081 gagcttaaaa cagcttctga tcttatggtt ttgttactgc tcggagatga atccatgcag
952 1141 aagttatttg aaggaggaaa aggcagtgtg ttccaaagag tactttcatg gattccttcc
953 1201 aacagccatc agctacaact tgcaggagca ttggctattg caaattttgc cagaaacgac
954 1261 ggaaactgca cccatatggt ggataacggc atagttcaaa agctgatgga tctgctagac
955 1321 agacatgtgg aggatgggaa tgtaactgtg cagcacgcag ctctgagcgc gctcagaaac
956 1381 ctggctattc ctgttgtaaa taaggctaag atgctatcag ctggtgttgc agaagcagta
957 1441 ttgaaatttc tcagatcgga gatgccccct gttcagttca agctgctggg aacattacga
958 1501 atgttaatag atgcacaagc agaagcagct gaacaactgg gaaaaaatgc aaaactggtg
959 1561 gaacgattgg tggagtggtg tgaagccaag gatcacgcag gtgtgatggg agaatcaaac
960 1621 agactacttt ctgcacttat acgacacagc aaatctaaag atgtaattag gacgattgta
961 1681 cagagcggtg gcatcaagca tttagtaacc atggcaacca gcgaacacgt aataatgcaa
962 1741 aacgaagctc tcgttgcact ggcattaata gcagctttag agttagtcac tgctgaaaag
963 1801 gatcttgaaa atgctcagct tgttcagatt ctacacagac tgctatcaga cgacaggagc
964 1861 gctccagaaa taaaatacaa ctccatagtg ctggtctgtg cccttattgg atctgaatct
965 1921 ctccaaaagg aagtgcagaa catggcgttc ctagaagtcg tatcaaaact ccgcagccat
966 1981 gagaacaaaa ctgttgccca gcaggcctcg ctaacagagc agagacttgc tgtagaaagc
967 2041 tgaggaaggt cttgttttca ttgcatccat cacagattcc accttcatcc tttgtcctgc
968 2101 tgtcgctcct gctatgtttt ccactgtatc acttgtgcat gcgtgtaatg tccccacaca
969 2161 aattgataaa ctgctgtagg tacccatcca aaaaggtttc taaaaattca taggtggtgt
970 2221 taacatgaat ttgtctccgc ccgtaactgt tctacttgta ttcttgttgc ttgggccaca
971 2281 tagtagaatg tgcatgttgt agtcctatga tgatgtaaaa gtggtactac acaatgactc
972 2341 tttcctcaca cccccctaac tgcataacaa tgtactacta aattagggac agtacaagat
973 2401 gcagcaagtc caggctagtg cactgactgt aggattaaga agtaaatcta gctccatttt
974 2461 tggtgctctg aagaggcagg tttgaatgca ttgtactgct gctcattcac tggtcttgcc
975 2521 tattaatgtc aaactcgtgg tacctagagg taaacaaata aaaatttcag tgctttcact
976 2581 taaaaaaaaa aaaaaa
977 //
978
979 LOCUS NM_204996 3595 bp mRNA linear VRT 06-JAN-2017
980 DEFINITION Gallus gallus Janus kinase 3 (JAK3), mRNA.
981 ACCESSION NM_204996 XM_424229
982 VERSION NM_204996.3
983 KEYWORDS RefSeq.
984 SOURCE Gallus gallus (chicken)
985 ORGANISM Gallus gallus
986 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
987 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
988 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
989 Phasianidae; Phasianinae; Gallus.
990 REFERENCE 1 (bases 1 to 3595)
991 AUTHORS Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
992 Korn B and Buerstedde JM.
993 TITLE A large database of chicken bursal ESTs as a resource for the
994 analysis of vertebrate gene function
995 JOURNAL Genome Res. 10 (12), 2062-2069 (2000)
996 PUBMED 11116100
997 REFERENCE 2 (bases 1 to 3595)
998 AUTHORS Sofer L, Kampa D and Burnside J.
999 TITLE Molecular cloning of a chicken JAK homolog from activated T cells
1000 JOURNAL Gene 215 (1), 29-36 (1998)
1001 PUBMED 9666067
1002 COMMENT VALIDATED REFSEQ: This record has undergone validation or
1003 preliminary review. The reference sequence was derived from
1004 AF034576.2 and AJ399251.1.
1005 On Jan 6, 2017 this sequence version replaced gi:787166343.
1006
1007 Sequence Note: This RefSeq record was created from transcripts of
1008 different breeds. The extent of this transcript is supported by
1009 transcript alignments and orthologous data.
1010
1011 ##Evidence-Data-START##
1012 Transcript exon combination :: AF034576.2 [ECO:0000332]
1013 RNAseq introns :: mixed/partial sample support
1014 SAMEA2201357, SAMEA2201358
1015 [ECO:0000350]
1016 ##Evidence-Data-END##
1017 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1018 1-2334 AF034576.2 1-2334
1019 2335-2826 AJ399251.1 85-576
1020 2827-3595 AF034576.2 2824-3592
1021 FEATURES Location/Qualifiers
1022 source 1..3595
1023 /organism="Gallus gallus"
1024 /mol_type="mRNA"
1025 /db_xref="taxon:9031"
1026 /chromosome="28"
1027 /map="28"
1028 gene 1..3595
1029 /gene="JAK3"
1030 /gene_synonym="JAK"
1031 /note="Janus kinase 3"
1032 /db_xref="CGNC:20233"
1033 /db_xref="GeneID:395845"
1034 CDS 56..3379
1035 /gene="JAK3"
1036 /gene_synonym="JAK"
1037 /EC_number="2.7.10.1"
1038 /note="Janus kinase 3 (a protein tyrosine kinase,
1039 leukocyte)"
1040 /codon_start=1
1041 /product="tyrosine-protein kinase JAK3"
1042 /protein_id="NP_990327.2"
1043 /db_xref="CGNC:20233"
1044 /db_xref="GeneID:395845"
1045 /translation="MAPLGEETPLIGERSCSLSSSEPGTLQVYLYHRGPHAPPDSAAT
1046 LTFTFGEYTAEELCVHAAKACGVLPICHPLFALATEDLSCWYPPNHLFTVEDARSQVV
1047 VYRIRFFFPNWCGQGQVHRFQLPSDRPSPVLDYPVIDYLFAQSRSDFIAGRMELALSL
1048 AGQEECLSLAVLDMLRIAKEKWQSPKEVFSCVSYKTCIPEQLRCQIQQHSFLTRKRIR
1049 RRVAQSLRRMGGCRVDGCCLKLKYLLDLERLRCCWAEESFHAHGPDADIAIHVSTDSG
1050 VSWSCVGSESRQHFCDFPDIADVSIKQASRDGGPVENRIVTLTKTDNRVLEVEFPTLR
1051 EALSFMALVDGYYRLTADAHHYFCKEVAPPRLLEDMENQCHGPISSEFAVRKLKAAGS
1052 HPGLYVLRRSPQDFDSYLLTVCAETRSGQDYKRCLIRRDEDGSFWLAGLARRFCSLQE
1053 LLGTYGCCGLQAEGAHLRLDTCCPPLPREKSNLLIVRSGCPRPPNSPPAPRRSPNQMS
1054 FHKIDPESLIRGESLGQGSFTHIYKGIKRDQKDDEFYQTPVVLKVMDSSHRNCSESFL
1055 EAASIMSQLSHKHLVLLHGVSLGKDSIMVQEYIRHGPLDLYLKKNHSEGKVTTSWKLQ
1056 VAKQLAYALNYLEDKKITHGNVSAKKVLLTREGDAASSSPPFIKLNDPGVSITVLAKE
1057 WLVERIPWVAPECLSDPQSLALPADKWGFGATLWEIFSGGNMPVSLLEPQKKLQFYDS
1058 RLQLPAPRWSELAALIAQCMRYAPSRRPCFRAIIRDINSLISSDYELLSELSPGDVTL
1059 RESCWGYEHVAAGHGPAQFEERHLKYISLLGKGNFGSVELCRYDPLGDSTGELVAVKK
1060 LQQDSAKELQDFEREIQILHSLQHDFIVKYRGVCYSRGRRGLRLVMEYLPDGCLRDYL
1061 QKNQHRLEHRTLLLYAWQICKGMEYLGAQRCVHRDLASRNILVESETHVKIGDFGLAK
1062 LLPQDKDYYVVQEPGQSPVFWYAPESLADNVFSRASDVWSFGVLLYELFTYSNKSRSP
1063 SEEFLHMMGPEKPAQIICHLLELLKDSRRLPVPPGCPMEVYAMMLSCWAFAPSARPTF
1064 TELAARVEALRDGRGTAHG"
1065 ORIGIN
1066 1 gggggggggg tacacgggga ccacactgag caccgctgtc cccgcagtgc ccgccatggc
1067 61 cccgctgggc gaggagacgc cgctgatcgg tgagcgctcc tgcagtctgt cctcctcgga
1068 121 gcccggcacg ctgcaggtgt acctctacca ccggggaccc catgcgcccc ccgactccgc
1069 181 tgccaccctc accttcacct tcggcgagta cacggccgag gagctgtgcg tgcacgctgc
1070 241 caaggcctgc ggagtgctgc ccatctgcca ccccctcttc gcgttggcta cggaggatct
1071 301 cagctgctgg taccccccca accacctctt cacggtggag gacgcccgca gccaggtggt
1072 361 ggtgtatagg atcaggttct tcttccccaa ctggtgtggg cagggccagg tgcaccgctt
1073 421 ccagctgcca agtgaccgcc ccagccccgt gctggactac cctgtcatcg attacctgtt
1074 481 tgcccagtct cgtagtgact tcatcgcggg gcgcatggag ctggcactga gcctggcggg
1075 541 gcaggaggag tgcctgagcc tggcggtgct ggatatgctg cgcatcgcca aggagaagtg
1076 601 gcagagcccc aaggaggtct tcagctgcgt cagctacaag acctgcatcc cggagcagct
1077 661 gcggtgtcag atccagcagc acagcttcct cacccgaaag cgcatccgcc gccgtgttgc
1078 721 gcagtccctg cgtaggatgg ggggctgccg ggtggacggg tgctgcctga agcttaaata
1079 781 cctgctggac ctggagaggc tgcggtgctg ctgggctgag gagagcttcc atgcacacgg
1080 841 ccccgacgcc gacatcgcca tccacgtgtc tacagacagc ggggtctcct ggagctgcgt
1081 901 tggatctgag agccgccagc acttctgtga cttccccgac atcgccgacg tcagcatcaa
1082 961 gcaggcgagc cgcgacggtg gccccgtgga gaaccgcatc gtcaccctca ccaagacgga
1083 1021 caacagggtg ctggaggtgg agttccccac gctgcgggaa gcactctcct tcatggctct
1084 1081 ggtggatgga tactaccgcc tgactgcaga tgcccaccac tacttctgca aggaggtggc
1085 1141 ccccccccgg ctgctcgagg acatggagaa ccaatgccac ggacccatca gctctgagtt
1086 1201 tgctgtgcgc aaactgaagg cggcggggtc ccatccgggg ctgtacgtgc tgcgccgaag
1087 1261 cccccaggac ttcgacagct acctgctgac cgtgtgcgcc gagacgcgct ccgggcagga
1088 1321 ctacaagcgc tgcctgatcc gcagggatga ggatggcagc ttctggctgg cagggctggc
1089 1381 acggcgcttc tgcagcctgc aggagctgct tggcacctat gggtgctgcg ggctgcaggc
1090 1441 tgagggtgcc cacctgcgcc tggacacgtg ttgcccaccc ctgccccgag agaagtccaa
1091 1501 cctgctgatt gtgcgcagtg gatgcccacg accccccaat tctccccccg ccccgcgccg
1092 1561 cagccccaac cagatgtcat tccacaagat cgaccccgag agcctcatac ggggcgagag
1093 1621 cctggggcag ggctccttca cccacatcta caaaggcatc aagcgggacc agaaggatga
1094 1681 cgagttctac cagaccccgg tggtgctcaa ggtgatggac agcagccacc gcaactgctc
1095 1741 cgagtccttc ctggaggccg ccagcatcat gagccagctg tcccacaagc acctggtgct
1096 1801 gctgcacggc gtcagcctcg gcaaggacag catcatggtg caggagtaca tcaggcacgg
1097 1861 gcccctggac ctctacctaa agaagaacca cagcgagggc aaggtgacga ccagctggaa
1098 1921 gctgcaggtg gccaagcagc tggcatatgc actcaactac ttggaggata agaaaatcac
1099 1981 ccacggcaac gtctctgcta agaaggtgct gctgacccgg gagggggacg cggccagcag
1100 2041 cagccccccc ttcatcaagc tcaacgaccc cggggtcagc atcaccgtcc tggccaagga
1101 2101 gtggctggtg gagcgcatcc cttgggtggc ccccgagtgc ctgagcgacc cccagagcct
1102 2161 ggcgctgcca gctgacaagt ggggctttgg ggcaacctta tgggagatct tcagtggggg
1103 2221 caacatgcct gtcagcctac tggagccaca gaagaagctg cagttctacg acagccgcct
1104 2281 gcagctgccc gccccgcgct ggagcgagct ggccgcgctc atcgctcagt gcatgcgcta
1105 2341 cgcgcccagc aggcggccct gcttccgtgc catcatccgc gacatcaaca gcctcatctc
1106 2401 ctccgactac gagctgctct cagagctgtc acccggcgat gtgacgctgc gggagagctg
1107 2461 ctgggggtac gagcacgtgg cggcggggca cggcccggct cagttcgagg agaggcacct
1108 2521 caagtacatc tcactgctgg gcaagggcaa ctttgggagc gtggagctgt gccgctacga
1109 2581 cccgctgggt gacagcacgg gtgagctggt ggccgtgaag aagctgcagc aggattcggc
1110 2641 caaggagctg caggactttg agagggagat ccagatcctg cactcgctgc agcacgactt
1111 2701 catcgtcaag taccggggcg tctgctacag ccgtgggcgc cgggggctgc ggttggtgat
1112 2761 ggagtatctg cctgacggct gcctgaggga ctacctgcaa aagaaccagc accgcctgga
1113 2821 gcaccgcacg ctgctgctct acgcctggca gatctgcaag ggcatggagt acctgggggc
1114 2881 gcagcgctgc gtgcaccgcg acttggccag caggaacatc ctggtggaga gcgagaccca
1115 2941 cgtcaagatc ggtgacttcg ggctggccaa gctgctgcca caggacaagg actactacgt
1116 3001 ggtgcaggag cccgggcaga gccccgtgtt ctggtacgca cccgagtcgc tggctgacaa
1117 3061 cgtcttctcc cgagcatccg acgtgtggag cttcggggtg ctgctctatg agctcttcac
1118 3121 ctacagcaat aagagcagga gcccctcgga ggagttcctc cacatgatgg gccctgagaa
1119 3181 accagcacag atcatctgcc atttgctgga gctgctgaag gactcccggc ggctcccggt
1120 3241 gcccccgggc tgccccatgg aggtgtatgc gatgatgctg agctgctggg cgttcgcccc
1121 3301 cagtgccaga cccaccttca ccgagttggc agccagggtt gaggcactgc gggatggccg
1122 3361 tggcaccgcc catgggtagg gggtgcgtgg aggggggagt acaacccccc tgcagccccc
1123 3421 agcacgaggg catgacagac ccccagcacg agggcatgac agacagaccg acggacgcag
1124 3481 caatgctcca atgcgtttta accactgtgg ttgtttctgt tgtgactccc cccccccatt
1125 3541 tacccctctt ttgtaaccgg gtttgaccaa tttcaagtaa atgatggtgg aattt
1126 //
1127
1128 LOCUS NM_001005808 2905 bp mRNA linear VRT 06-JAN-2017
1129 DEFINITION Gallus gallus isocitrate dehydrogenase 3 (NAD(+)) alpha (IDH3A),
1130 mRNA.
1131 ACCESSION NM_001005808 XM_413748
1132 VERSION NM_001005808.2
1133 KEYWORDS RefSeq.
1134 SOURCE Gallus gallus (chicken)
1135 ORGANISM Gallus gallus
1136 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1137 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1138 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1139 Phasianidae; Phasianinae; Gallus.
1140 REFERENCE 1 (bases 1 to 2905)
1141 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
1142 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
1143 P, Hayashizaki Y and Buerstedde JM.
1144 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
1145 gene function analysis
1146 JOURNAL Genome Biol. 6 (1), R6 (2005)
1147 PUBMED 15642098
1148 COMMENT VALIDATED REFSEQ: This record has undergone validation or
1149 preliminary review. The reference sequence was derived from
1150 AJ738046.1, AJ720955.1 and CR406443.1.
1151 On Jan 6, 2017 this sequence version replaced gi:347360901.
1152
1153 ##RefSeq-Attributes-START##
1154 gene product(s) localized to mito. :: inferred from homology
1155 ##RefSeq-Attributes-END##
1156 COMPLETENESS: complete on the 3' end.
1157 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1158 1-108 AJ738046.1 390-497 c
1159 109-217 AJ720955.1 2-110
1160 218-2107 CR406443.1 1-1890
1161 2108-2855 AJ720955.1 2001-2748
1162 2856-2905 AJ720955.1 2749-2798
1163 FEATURES Location/Qualifiers
1164 source 1..2905
1165 /organism="Gallus gallus"
1166 /mol_type="mRNA"
1167 /db_xref="taxon:9031"
1168 /chromosome="10"
1169 /map="10"
1170 gene 1..2905
1171 /gene="IDH3A"
1172 /note="isocitrate dehydrogenase 3 (NAD(+)) alpha"
1173 /db_xref="CGNC:2399"
1174 /db_xref="GeneID:415362"
1175 misc_feature 174..176
1176 /gene="IDH3A"
1177 /note="upstream in-frame stop codon"
1178 CDS 216..1316
1179 /gene="IDH3A"
1180 /EC_number="1.1.1.41"
1181 /note="isocitrate dehydrogenase 3 (NAD+) alpha"
1182 /codon_start=1
1183 /product="isocitrate dehydrogenase [NAD] subunit alpha,
1184 mitochondrial"
1185 /protein_id="NP_001005808.2"
1186 /db_xref="CGNC:2399"
1187 /db_xref="GeneID:415362"
1188 /translation="MAAAAWMPAVSRLLGAFKNQKQVTRSFSSAVQTVTLIPGDGIGP
1189 EISAAVMKIFDAAKVPIQWEERNVTAIQGPGGKWMIPPDAKESMDKNKMGLKGPLKTP
1190 IAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVI
1191 VEGVVQSIKLITEEASKRIAEFAFEYARNNQRSHVTAVHKANIMRMSDGLFLRKCREA
1192 AENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTPSG
1193 NIGANGVAIFESVHGTAPDIAGKDLANPTALLLSAVMMLRHMGLHKHATKIETACFDT
1194 IKDGKALTKDLGGNAKCSEFTEEICSRVRDTD"
1195 ORIGIN
1196 1 gcccgctgcg ctgacgtagc ccgcccgacg gcgcgggcac ggagcacggg agcgcggacc
1197 61 ccgtaacgca gcgcggggcg gggccgtcag cggcgcgcga ggtgcggcgg cggccgcctc
1198 121 ccgggggcgg ggcggtagcg cgcggccgct cggcgccggt tccggtccgt cggtgactgc
1199 181 ggacgttgcg gggtcggagg agcgccgggc gcgccatggc cgcagccgcg tggatgcccg
1200 241 cggtttcccg actgctcggt gctttcaaaa accaaaaaca ggtgaccaga agttttagta
1201 301 gtgctgtaca aacggtgact ttaatcccag gagatggcat aggacctgag atttctgctg
1202 361 ctgtcatgaa gatctttgat gctgccaaag ttcctattca gtgggaagaa aggaatgtta
1203 421 cagcaatcca aggaccagga ggaaagtgga tgatacctcc agatgccaaa gaatccatgg
1204 481 ataaaaacaa aatgggatta aaagggccct taaaaacccc aatcgctgca gggcacccct
1205 541 cgatgaatct gctgctgcgt aaaacctttg acctctatgc aaacgtccgt ccctgcgtct
1206 601 caattgaggg gtacaaaacc ccttacacag acgtaaatat cgtcacgata cgagagaaca
1207 661 cagaaggcga atacagtggg attgagcatg tgattgttga aggcgttgtg caaagcatca
1208 721 agctaatcac agaggaagct agcaagcgca ttgcagagtt tgcttttgag tatgctagaa
1209 781 ataaccagag aagccatgtt actgctgtgc acaaggcaaa tattatgaga atgtctgatg
1210 841 ggcttttctt gagaaaatgc agggaagcag cagaaaactg taaagacatt aaatttaatg
1211 901 aaatgtatct ggatactgtg tgtctgaata tggttcagga tccttcacaa tttgatgtgc
1212 961 ttgttatgcc taacttgtat ggtgacatcc tcagtgactt gtgtgctgga ttgattggag
1213 1021 gtcttggagt aacaccaagt ggaaatattg gtgctaacgg agttgccatt tttgaatcgg
1214 1081 ttcatggaac agcacctgat attgcaggaa aagacttggc aaatccaact gctcttctcc
1215 1141 tgagcgctgt aatgatgctg cgtcatatgg gactacacaa gcatgccaca aaaatcgaga
1216 1201 cagcttgctt tgatacaatt aaagatggaa aggccttgac aaaagacttg ggtggcaatg
1217 1261 ccaagtgttc agagttcaca gaagagatct gcagcagagt acgggacaca gactaaactt
1218 1321 ctcatttgat tcatattaac tctgaaaaga tgcatcacaa acatgcagta tgtaacccgg
1219 1381 tatccatatg catatatttt gctcttctct taagagagca aactttatag ggaaggcctc
1220 1441 ttcattaata aatttagtcc ccatggctcc agatgatgct tgtgcctgct ttcagtggac
1221 1501 tttaagtgct ctgtcttatt tatttgattc tacctggtaa gcatttttat gtaagagaag
1222 1561 tattttttgc cactgtagct gtctactgtt tgctgtttca actagatggt ttttattttt
1223 1621 cacaaagaaa aattatgtga atataacata accagaacta gtgaattgct acagcacctt
1224 1681 aatgcttaga gcctgtgtta ttggtcttac tgaaatttaa aggataggct tttggcctaa
1225 1741 caagagcaca agataaacat tataaaaaga aacgggtata aactaattta aaatagcaat
1226 1801 tgtgtgttaa aagcaatgaa agaacacttc tgggtgctct gttgattgat gaaatactgc
1227 1861 tttgtcttca aaggacatga aaaaaagaaa tgcaaaatct tagagattta atctatttat
1228 1921 gtttatacag aaaaaaggca tcaaaccagc tggatgtgag aattgatatt aacaaaaata
1229 1981 tttttcaaat ctctatcaaa atagctctca taagttttcc tttctgaaat gcagcttaat
1230 2041 ttacaagagt tgtaatgaga gtaatttaga aaaactcatt cctgctctgt attatgaagg
1231 2101 gaagttatta actgcaccag tttatacaaa atatttcatg gcttctgctg gattgctttt
1232 2161 tgtgttatac tttgttttta tgaagcctgc tcagtgtgtt tcactgcgct gactagtgat
1233 2221 tttactctat aaactctgaa tgtaaaagac tagtcctgat ggaatgaaga cagattgaag
1234 2281 gtctggctct ggttcctatg ttccagaaat acatttcatc cctattcaag ggatcagaga
1235 2341 cttctttctt ctcctgcttc ctaagcctaa taagcaccaa agcacctctt tctttttttt
1236 2401 ttccctccct tcttcatcac atacaggtaa tcatgagccg ttctgacctg gatttcttaa
1237 2461 gggtatgctg ctcttagtat atccttccag aaaatgcaca ttcgtaaaac ttgtggccaa
1238 2521 cacaggttta tacctactgc cagagccaga tgtcttaaag cttaattgta tttataggta
1239 2581 ttatgcctct tagttacttt ctactgaggc tgttcaggct ggttatttca gaatcaaaac
1240 2641 tattttgaat aatgtcttct agcagaactc tatgaagtaa gcaacacact tttttgtaca
1241 2701 gcctaacaac gtgttggagg agggacagta agctttgttt cttgtgctct ctgcttttgg
1242 2761 tgaatagggt atcatttcct tctgtgtttt acaagctgct gcttccttgt ttcctctaga
1243 2821 ttaatcttaa gatcttctgc agtaccatta cgcacaaaat ggggaaaaaa aataactttt
1244 2881 tgaagaccta aaaaaaaaaa aaaaa
1245 //
1246
1247 LOCUS NM_205405 5027 bp mRNA linear VRT 06-JAN-2017
1248 DEFINITION Gallus gallus complement component 3 (C3), mRNA.
1249 ACCESSION NM_205405 XM_001236913
1250 VERSION NM_205405.2
1251 KEYWORDS RefSeq.
1252 SOURCE Gallus gallus (chicken)
1253 ORGANISM Gallus gallus
1254 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1255 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1256 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1257 Phasianidae; Phasianinae; Gallus.
1258 REFERENCE 1 (bases 1 to 5027)
1259 AUTHORS Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
1260 TITLE Splenic gene expression profiling in White Leghorn layer inoculated
1261 with the Salmonella enterica serovar Enteritidis
1262 JOURNAL Anim. Genet. 46 (6), 617-626 (2015)
1263 PUBMED 26358731
1264 REFERENCE 2 (bases 1 to 5027)
1265 AUTHORS Haynes T, Luz-Madrigal A, Reis ES, Echeverri Ruiz NP,
1266 Grajales-Esquivel E, Tzekou A, Tsonis PA, Lambris JD and Del
1267 Rio-Tsonis K.
1268 TITLE Complement anaphylatoxin C3a is a potent inducer of embryonic chick
1269 retina regeneration
1270 JOURNAL Nat Commun 4, 2312 (2013)
1271 PUBMED 23942241
1272 REMARK GeneRIF: C3a is sufficient to induce complete regeneration of the
1273 embryonic chick retina from stem/progenitor cells present in the
1274 eye, independent of fibroblast growth factor receptor signaling.
1275 REFERENCE 3 (bases 1 to 5027)
1276 AUTHORS Liu D and Niu ZX.
1277 TITLE Cloning of a gene fragment encoding chicken complement component
1278 C3d with expression and immunogenicity of Newcastle disease virus F
1279 gene-C3d fusion protein
1280 JOURNAL Avian Pathol. 37 (5), 477-485 (2008)
1281 PUBMED 18798021
1282 REFERENCE 4 (bases 1 to 5027)
1283 AUTHORS Fu J, Lin G, Zeng B, Wu Z, Wu Y, Chu H, Qin G, Liang G, Li J, Gan
1284 X, Yu X, Li C and Liu D.
1285 TITLE Anti-ischemia/reperfusion of C1 inhibitor in myocardial cell injury
1286 via regulation of local myocardial C3 activity
1287 JOURNAL Biochem. Biophys. Res. Commun. 350 (1), 162-168 (2006)
1288 PUBMED 16996480
1289 REMARK GeneRIF: Complement C1 Inactivator Proteins, in addition to
1290 inhibition of the systemic complement activation, prevents
1291 myocardial cell injury via a direct inhibitory role in the local
1292 myocardial C3 activity
1293 REFERENCE 5 (bases 1 to 5027)
1294 AUTHORS Recheis B, Rumpler H, Schneider WJ and Nimpf J.
1295 TITLE Receptor-mediated transport and deposition of complement component
1296 C3 into developing chicken oocytes
1297 JOURNAL Cell. Mol. Life Sci. 62 (16), 1871-1880 (2005)
1298 PUBMED 16041564
1299 REMARK GeneRIF: C3 is transported into oocytes by LR8-mediated
1300 endocytosis.
1301 REFERENCE 6 (bases 1 to 5027)
1302 AUTHORS Mavroidis M, Sunyer JO and Lambris JD.
1303 TITLE Isolation, primary structure, and evolution of the third component
1304 of chicken complement and evidence for a new member of the alpha
1305 2-macroglobulin family
1306 JOURNAL J. Immunol. 154 (5), 2164-2174 (1995)
1307 PUBMED 7532662
1308 COMMENT VALIDATED REFSEQ: This record has undergone validation or
1309 preliminary review. The reference sequence was derived from
1310 AADN04001210.1 and U16848.1.
1311 On Jan 6, 2017 this sequence version replaced gi:45382302.
1312
1313 Sequence Note: This RefSeq record was created from transcript and
1314 genomic sequence data to make the sequence consistent with the
1315 reference genome assembly. The genomic coordinates used for the
1316 transcript record were based on transcript alignments.
1317 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1318 1-96 AADN04001210.1 7062-7157
1319 97-289 AADN04001210.1 9895-10087
1320 290-449 AADN04001210.1 12264-12423
1321 450-520 AADN04001210.1 13480-13550
1322 521-615 AADN04001210.1 13637-13731
1323 616-698 AADN04001210.1 13873-13955
1324 699-789 AADN04001210.1 14056-14146
1325 790-892 AADN04001210.1 14966-15068
1326 893-1013 AADN04001210.1 15789-15909
1327 1014-1129 AADN04001210.1 16251-16366
1328 1130-1276 AADN04001210.1 16801-16947
1329 1277-1489 AADN04001210.1 18032-18244
1330 1490-1684 AADN04001210.1 18340-18534
1331 1685-1843 AADN04001210.1 19569-19727
1332 1844-1973 AADN04001210.1 19816-19945
1333 1974-2045 AADN04001210.1 20174-20245
1334 2046-2243 AADN04001210.1 20424-20621
1335 2244-2355 AADN04001210.1 21290-21401
1336 2356-2441 AADN04001210.1 21774-21859
1337 2442-2581 AADN04001210.1 22179-22318
1338 2582-2794 AADN04001210.1 22390-22602
1339 2795-2861 AADN04001210.1 22904-22970
1340 2862-2948 AADN04001210.1 23370-23456
1341 2949-3152 AADN04001210.1 23543-23746
1342 3153-3228 AADN04001210.1 24151-24226
1343 3229-3388 AADN04001210.1 24306-24465
1344 3389-3484 AADN04001210.1 24648-24743
1345 3485-3635 AADN04001210.1 24851-25001
1346 3636-3799 AADN04001210.1 25937-26100
1347 3800-3958 AADN04001210.1 26882-27040
1348 3959-4109 AADN04001210.1 27264-27414
1349 4110-4161 AADN04001210.1 28185-28236
1350 4162-4249 AADN04001210.1 28571-28658
1351 4250-4339 AADN04001210.1 28825-28914
1352 4340-5027 U16848.1 4339-5026
1353 FEATURES Location/Qualifiers
1354 source 1..5027
1355 /organism="Gallus gallus"
1356 /mol_type="mRNA"
1357 /db_xref="taxon:9031"
1358 gene 1..5027
1359 /gene="C3"
1360 /gene_synonym="C3d"
1361 /note="complement component 3"
1362 /db_xref="CGNC:8744"
1363 /db_xref="GeneID:396370"
1364 CDS 26..4981
1365 /gene="C3"
1366 /gene_synonym="C3d"
1367 /EC_number="3.4.21.43"
1368 /note="complement C3 alpha chain; complement component 3d"
1369 /codon_start=1
1370 /product="complement C3 precursor"
1371 /protein_id="NP_990736.2"
1372 /db_xref="CGNC:8744"
1373 /db_xref="GeneID:396370"
1374 /translation="MGLLLLPLLLGVLLLHAVPTPAQMVTMVTPAVLRLDTDEKVVLE
1375 APGLSAPTEANILVQDFPQKRKVLFQVRKQLNPAEGMMAIATVKVPVKLLPPVVGKHF
1376 VSVVARVGQVTLEKVLLVSLQSGHIFLQTDKPIYTPGSTVLCRLFALSHFMQPLLKTV
1377 IVEVKTPDNVIIKQVPVSSPMRNGIFSINHNLPEVVSLGTWTITAKFEDSQDQVFSTQ
1378 FEVKEYVLPSFEVTLDPQEKFLYIDRQEDFRVTITARYLYGKNLQGTAFVLFGVVVDD
1379 EKKTIPQSLQRVKVTDGDGEAVLPMAMLRQRFANLQELVGHSLYVTVTVLTESGSDMV
1380 EAQRSGIRIVTSPYTIHFTHTPKYFKPGMPFDLTVYVTNPDNSPAPRIPVKADNFQGL
1381 VSTQRDGTAKLVLNMPANKNSVPITVRTDQKDLPPERQASRQIVAEAYQSQGNSGNYL
1382 HLAVGASQVQPGDNLPINFHLKSNRDDVRKSVSYFTYLILSKGHIVHVGRQPREGDQS
1383 LVTMSLPVTANLIPSFRIVAYYHVKPGEIIADSVWVDVKDTCMGSLVVRGASEADNRV
1384 HEPRTPMRLHIEGDHKAHVGLVAVDKAVYVLNKNKLTQSKVWDTVENSDIGCTPGSGR
1385 NHVGVFADAGLSLTSNVNINTEQRSEVQCAKPAKRKRRSVRLIKHKGTKMAEYSDKNL
1386 RKCCEDGMKENLMGYSCEKRATYVLDGKACTEAFLSCCLYIKGIRDEERELQYELARS
1387 EVDDAFLSDEDITSRSLFPESWLWQVEELTEPPNEQGISMKTLPIYLKDSITTWEVLA
1388 VSISENKGLCVADPYEITVMKEFFIDLRLPYSAVRNEQVEVRAILYNYWTNKIKVRVE
1389 LMYNPALCSASTTKTRYQQIFQLEPQSSHAVPFVIVPLQLGQHDVEVKAAVWNSFVSD
1390 GVKKKLRVVPEGMRLEKTVKIVELDPKTLGNNGVQEVKVKAANLSDIVPNTESETKVS
1391 IQGNPVSILVEKATDGTKLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDSTMQWETFGI
1392 NRRTEAIELIKKGYTQQLAYRKEDGSFAAFTTRPSSTWLTAYVAKVFAMAINMVDIKP
1393 EVVCGAIKWLILEKQQPDGLFQEDAPVIHKEMVGGYHGAEPSVSLTAFVLSALQESQK
1394 ICKNYVKSLDGSIAKASDYLSRKYQSLTRPYTVALTSYALALTGKLNSEKVLMKFSKD
1395 GTHWAERNAHTYNIEGTSYALLALLQMEKAELTGPVVRWLAQQNYFGGGYGSTQATIL
1396 VFQALAQYHVALPRQLELNLDVSVLLPRRANAITYRIENNNALVARSAETKLNEDFTV
1397 KAEGTGKGTMTVVTVYNAKVPEKENKCDNFDLRVSVEDVKAGRELEGVIRSVKITICT
1398 RFLDTVDATMSILDISMLTGFSPDVQDLKSLSEGVERYISKFEIDHALSNRSNLIIYL
1399 DKVSHQVEECIAFRAHQHFQVGLIQPASVIVYSYYKIDDRCTRFYHPDKAGGQLRKIC
1400 HGEVCCAEENCFIRVKKDNPITVNERIDLACKPGVDYVYKVKVVATEETPSHDNYIMS
1401 ILTVIKMGTDENPGGSNRTFVSHKQCRDALSLQKGQDYLVWGLASDLWVTGSRFSYLI
1402 SKDTWLEAWPLEESCQDADLQPLCQDFTEFSDNLVLFGCPT"
1403 sig_peptide 26..76
1404 /gene="C3"
1405 /gene_synonym="C3d"
1406 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
1407 ORIGIN
1408 1 cccgcgtccc catccccgct cagccatggg gctgctgctg ctgcccctcc tgctcggcgt
1409 61 tctgctgctc catgcggtcc ccacacctgc acagatggtg accatggtga ccccggcggt
1410 121 gctgcggttg gacacggacg agaaggtggt gttggaggct ccgggtctgt ccgcccccac
1411 181 cgaggccaac atcctggtgc aggatttccc ccaaaagcgc aaagtcctct tccaggtccg
1412 241 caagcagctc aaccccgcag aggggatgat ggccatcgcc accgtcaagg tgccggtgaa
1413 301 gctgctgccg ccggtggtgg ggaagcactt tgtctcggtg gtggcgcggg tgggacaggt
1414 361 gaccctggag aaggtgctgt tggtgtcact gcagagcggc cacatcttcc tgcagaccga
1415 421 caaacccatc tacacccccg gctccaccgt gctctgccgt ctcttcgccc tcagccactt
1416 481 catgcagcct ctgctgaaga cggtgatcgt ggaggtcaag acacccgaca acgtcatcat
1417 541 caagcaagtg cccgtgtcct cccccatgag gaatgggatc ttctccatca accacaacct
1418 601 gccggaggtg gtcagcctgg ggacatggac tatcacggcc aaatttgaag actcgcagga
1419 661 ccaggtcttc agcacacaat ttgaagtcaa ggaatacgtg ctgccgagct ttgaggtcac
1420 721 cctggacccg caggagaagt tcctctacat tgaccggcag gaggatttcc gggtgaccat
1421 781 cacagccagg tacctgtatg ggaagaatct gcaggggacc gccttcgtcc tcttcggtgt
1422 841 ggtggtggac gacgagaaaa agaccatccc ccagtccctg cagcgcgtca aggtgaccga
1423 901 tggggacggg gaggccgtgc tgcccatggc catgctgcgg cagcgcttcg ccaacctcca
1424 961 ggagctggtg ggacactctc tctacgtcac cgtcaccgtc ctcaccgagt caggcagtga
1425 1021 catggtggag gcacagcgca gcggcatccg catagtgacg tccccataca ccatccactt
1426 1081 cacccacacc cccaagtact tcaagccagg gatgcccttc gatctgacgg tttatgtcac
1427 1141 caaccccgat aattccccgg ctccgcgcat ccccgtcaag gccgacaact tccagggcct
1428 1201 cgtctccacg cagcgagatg gcacagccaa gctggtcctc aacatgccag ccaacaagaa
1429 1261 ctccgtcccc atcactgtga ggacagacca gaaggatctg cccccggagc gccaggcctc
1430 1321 gcggcagata gtggccgagg cgtatcaaag ccaggggaac tctggcaact accttcacct
1431 1381 ggcagtgggt gccagccagg tgcagcccgg ggacaacctc cccatcaact tccatctcaa
1432 1441 gagcaacaga gatgacgtcc gcaaatccgt ttcctacttc acctacctga tcctgagcaa
1433 1501 ggggcacatt gtccacgtgg gacggcagcc aagggaaggt gaccagagcc tggtcacgat
1434 1561 gtcgcttccc gtgacggcca acctcatccc ttccttccgt atcgtggcct actaccacgt
1435 1621 gaagcctggc gagatcattg ctgactccgt ctgggtcgat gtcaaggaca cctgcatggg
1436 1681 cagtctggtg gtgaggggag cgtcggaggc tgacaatcgt gtgcatgagc caaggacccc
1437 1741 catgcggctg cacatcgagg gcgaccacaa agcccacgtg gggctggtgg ctgtggacaa
1438 1801 ggctgtctat gtcctcaaca agaacaaact cactcagagt aaggtgtggg acacagtgga
1439 1861 gaacagcgac atcggctgca cgccgggcag tgggaggaac cacgtggggg tcttcgccga
1440 1921 tgccggcctc agcctgactt caaacgtgaa catcaacacg gagcagagaa gtgaggtcca
1441 1981 gtgtgcaaag cctgcaaaac gcaagcgccg ctccgtgagg ctcatcaagc acaagggcac
1442 2041 caagatggcc gagtacagcg acaagaacct gcgcaagtgc tgtgaggacg gcatgaagga
1443 2101 aaacctgatg ggctacagct gcgagaaacg ggccacctac gtcctcgatg gcaaagcctg
1444 2161 caccgaagcc ttcctcagct gctgcctcta catcaagggc atccgcgatg aggagcgcga
1445 2221 gctgcaatac gagctggctc gaagtgaggt ggatgacgcc ttcctgagtg atgaagacat
1446 2281 cacctcacgg agcctctttc cagagagctg gctatggcag gtggaggagc tgacagaacc
1447 2341 acccaatgaa cagggcatct ccatgaagac gctgcccata tacctgaaag actccatcac
1448 2401 cacctgggag gttctggctg tcagtatctc tgagaacaag ggtctgtgcg tggccgaccc
1449 2461 ctatgagatt acggtgatga aggagttctt cattgacctg cgcctgccct actcggcagt
1450 2521 gaggaacgag caggtggagg tccgcgccat tctctacaac tactggacga acaagatcaa
1451 2581 ggtgcgcgtg gagctgatgt acaacccagc cctgtgcagc gcatccacca ccaagacgcg
1452 2641 ctaccagcag atcttccaac tggaacctca gtcgtcgcac gccgtgccct tcgtcatcgt
1453 2701 gcccctgcag ctggggcagc atgacgtcga ggtgaaggca gctgtctgga acagctttgt
1454 2761 gtctgatggc gtcaagaaga agctcagagt ggtgcctgaa gggatgaggc tggagaagac
1455 2821 agtgaagata gtggagcttg acccaaagac gctgggaaat aacggtgtgc aagaagtgaa
1456 2881 ggtgaaagca gcaaacctct ctgacatcgt ccccaacact gagtcggaga ccaaagtcag
1457 2941 cattcaaggc aaccctgtgt ccatcctggt ggagaaagcc accgatggga ccaagctgaa
1458 3001 acacctcatt gtgaccccct cgggctgtgg ggagcagaac atgattggga tgacgcccac
1459 3061 cgtcattgct gtccactacc tggacagcac aatgcagtgg gagaccttcg gtatcaaccg
1460 3121 ccgcactgaa gccatcgaac tgattaaaaa gggttacacc caacaacttg cataccgcaa
1461 3181 agaagacggc tcatttgctg ccttcactac ccgcccatcg agcacctggt tgacagccta
1462 3241 cgtggccaag gtctttgcca tggccatcaa catggtggac atcaagccgg aggtggtttg
1463 3301 tggagccatc aaatggctca ttctggagaa gcaacagcca gatgggcttt tccaagaaga
1464 3361 cgctcctgtc atccacaagg agatggtggg aggctaccac ggtgctgagc ccagtgtgtc
1465 3421 cctgacagcc ttcgtcctct ccgcgctgca ggaatcccag aagatctgca agaactacgt
1466 3481 gaaaagcctg gatgggagca ttgccaaagc ctccgattac ctctcccgga aataccaatc
1467 3541 tttgactcga ccctacacgg tggccctgac ctcctacgcc ctggccctaa cggggaaact
1468 3601 caacagcgag aaagtcctga tgaagttctc caaagatggc acccactggg cggaacgcaa
1469 3661 cgcccacacc tacaacatcg aggggacgtc ctacgctctg ctggcgctgc tgcagatgga
1470 3721 gaaggccgag ctgacggggc cggtggtccg ctggttggcc cagcagaact acttcggtgg
1471 3781 tggctacgga tccacccagg ccaccatcct ggtgttccag gctctggctc agtaccacgt
1472 3841 ggcgctgccg cggcagctgg agctcaacct ggacgtgtcg gtgctgctgc cgcgccgcgc
1473 3901 caacgccatc acctaccgca tcgagaacaa caacgcgctg gtggcacgct cagctgagac
1474 3961 caagctgaac gaggacttca ctgtgaaagc agagggcact ggcaagggga caatgacagt
1475 4021 ggtgaccgtc tacaacgcca aagtgcccga gaaggaaaac aagtgtgaca acttcgacct
1476 4081 gcgggtcagc gtggaggacg tgaaggcggg ccgggagctg gaaggggtca tccgctctgt
1477 4141 caagatcacc atctgcacca ggttcctgga caccgtggat gccaccatgt ccatccttga
1478 4201 tatctccatg ctcaccggct tctcccctga cgtccaggac ctgaagagtc tctcggaggg
1479 4261 agtggagagg tacatttcca aatttgagat cgaccacgcg ctgtcgaacc gcagcaacct
1480 4321 catcatctac ctggacaagg tctcccacca agtggaggag tgcatcgcct tcagggccca
1481 4381 ccagcacttc caggtgggac tgatccagcc cgcctccgtc attgtctaca gctactacaa
1482 4441 gatcgatgac cgctgcaccc gcttctacca cccggacaag gctggtgggc agctgaggaa
1483 4501 gatctgccat ggggaagtgt gctgcgctga agaaaactgc ttcatacggg tgaagaagga
1484 4561 caatcccatc acagtcaatg agcgcatcga ccttgcctgc aagccagggg tggactatgt
1485 4621 gtacaaagtg aaggtggtgg caacagagga gacgccatcc cacgacaact acatcatgtc
1486 4681 catcctcacc gtcatcaaga tgggcactga tgagaaccca ggtgggagca accggacctt
1487 4741 cgtgagccat aagcagtgcc gggatgcatt gagtctccag aagggacagg actacctggt
1488 4801 gtgggggctg gcgtccgacc tgtgggtcac cggcagccgc ttctcctacc tcatcagcaa
1489 4861 ggacacgtgg ctggaagcgt ggcccttgga ggagtcgtgc caggatgccg acctgcagcc
1490 4921 gctctgccag gacttcaccg agttctccga caatctggtc ttgtttgggt gccccacctg
1491 4981 atgggtgacc ccaacccgat ggtgacccca acccgatggg tgtccct
1492 //
1493
1494 LOCUS NM_205387 422 bp mRNA linear VRT 06-JAN-2017
1495 DEFINITION Gallus gallus bone gamma-carboxyglutamate protein (BGLAP), mRNA.
1496 ACCESSION NM_205387
1497 VERSION NM_205387.2
1498 KEYWORDS RefSeq.
1499 SOURCE Gallus gallus (chicken)
1500 ORGANISM Gallus gallus
1501 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1502 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1503 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1504 Phasianidae; Phasianinae; Gallus.
1505 REFERENCE 1 (bases 1 to 422)
1506 AUTHORS Neugebauer BM, Moore MA, Broess M, Gerstenfeld LC and Hauschka PV.
1507 TITLE Characterization of structural sequences in the chicken osteocalcin
1508 gene: expression of osteocalcin by maturing osteoblasts and by
1509 hypertrophic chondrocytes in vitro
1510 JOURNAL J. Bone Miner. Res. 10 (1), 157-163 (1995)
1511 PUBMED 7747623
1512 REFERENCE 2 (bases 1 to 422)
1513 AUTHORS Carr,S.A., Hauschka,P.V. and Biemann,K.
1514 TITLE Gas chromatographic mass spectrometric sequence determination of
1515 osteocalcin, a gamma-carboxyglutamic acid-containing protein from
1516 chicken bone
1517 JOURNAL J. Biol. Chem. 256 (19), 9944-9950 (1981)
1518 PUBMED 6792200
1519 COMMENT VALIDATED REFSEQ: This record has undergone validation or
1520 preliminary review. The reference sequence was derived from
1521 AADN04000860.1.
1522 On Jan 6, 2017 this sequence version replaced gi:46195456.
1523
1524 Sequence Note: This RefSeq record was created from transcript and
1525 genomic sequence data to make the sequence consistent with the
1526 reference genome assembly. The genomic coordinates used for the
1527 transcript record were based on transcript alignments.
1528 COMPLETENESS: complete on the 3' end.
1529 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1530 1-79 AADN04000860.1 21636-21714 c
1531 80-112 AADN04000860.1 21050-21082 c
1532 113-179 AADN04000860.1 20875-20941 c
1533 180-422 AADN04000860.1 20519-20761 c
1534 FEATURES Location/Qualifiers
1535 source 1..422
1536 /organism="Gallus gallus"
1537 /mol_type="mRNA"
1538 /db_xref="taxon:9031"
1539 /chromosome="25"
1540 /map="25"
1541 /breed="Red Jungle Fowl"
1542 gene 1..422
1543 /gene="BGLAP"
1544 /gene_synonym="BGP"
1545 /note="bone gamma-carboxyglutamate protein"
1546 /db_xref="CGNC:49764"
1547 /db_xref="GeneID:396348"
1548 CDS 19..312
1549 /gene="BGLAP"
1550 /gene_synonym="BGP"
1551 /note="osteocalcin; gamma-carboxyglutamic acid-containing
1552 protein; bone Gla protein; bone gamma-carboxyglutamate
1553 (gla) protein (osteocalcin)"
1554 /codon_start=1
1555 /product="osteocalcin preproprotein"
1556 /protein_id="NP_990718.2"
1557 /db_xref="CGNC:49764"
1558 /db_xref="GeneID:396348"
1559 /translation="MKAAALLLLAALLTFSLCRSAPDGSDARSAKAFISHRASAEMVR
1560 RQKRHYAQDSGVAGAPPNPLEAQREVCELSPDCDELADQIGFQEAYRRFYGPV"
1561 sig_peptide 19..78
1562 /gene="BGLAP"
1563 /gene_synonym="BGP"
1564 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
1565 ORIGIN
1566 1 ctgcagtgga gctgcaccat gaaggccgcg gctctgctgc tcctcgcggc gctgctcaca
1567 61 ttcagcctct gccgcagcgc gccggacggc tcggatgctc gcagtgctaa agccttcatc
1568 121 tcccaccgcg ccagcgccga gatggtgcgc aggcagaagc ggcactacgc ccaggacagc
1569 181 ggcgtcgccg gagctccccc caaccccctg gaggcccaac gagaggtgtg tgagctgagc
1570 241 cccgactgcg acgagttggc cgaccagatc ggcttccagg aggcgtaccg ccgcttctac
1571 301 ggccccgtct gagccccccc ggggctcaac gccccctccc cacccccacc tccccccact
1572 361 ccccccatta tgctccactt ctccgcgaag gatggacaga aataaaggca gagcgcaggg
1573 421 ca
1574 //
1575
1576 LOCUS NM_001115017 5206 bp mRNA linear VRT 05-JAN-2017
1577 DEFINITION Gallus gallus selenoprotein O (SELENOO), mRNA.
1578 ACCESSION NM_001115017 XM_415989
1579 VERSION NM_001115017.3
1580 KEYWORDS RefSeq.
1581 SOURCE Gallus gallus (chicken)
1582 ORGANISM Gallus gallus
1583 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1584 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1585 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1586 Phasianidae; Phasianinae; Gallus.
1587 REFERENCE 1 (bases 1 to 5206)
1588 AUTHORS Gladyshev VN, Arner ES, Berry MJ, Brigelius-Flohe R, Bruford EA,
1589 Burk RF, Carlson BA, Castellano S, Chavatte L, Conrad M, Copeland
1590 PR, Diamond AM, Driscoll DM, Ferreiro A, Flohe L, Green FR, Guigo
1591 R, Handy DE, Hatfield DL, Hesketh J, Hoffmann PR, Holmgren A,
1592 Hondal RJ, Howard MT, Huang K, Kim HY, Kim IY, Kohrle J, Krol A,
1593 Kryukov GV, Lee BJ, Lee BC, Lei XG, Liu Q, Lescure A, Lobanov AV,
1594 Loscalzo J, Maiorino M, Mariotti M, Sandeep Prabhu K, Rayman MP,
1595 Rozovsky S, Salinas G, Schmidt EE, Schomburg L, Schweizer U,
1596 Simonovic M, Sunde RA, Tsuji PA, Tweedie S, Ursini F, Whanger PD
1597 and Zhang Y.
1598 TITLE Selenoprotein Gene Nomenclature
1599 JOURNAL J. Biol. Chem. 291 (46), 24036-24040 (2016)
1600 PUBMED 27645994
1601 REFERENCE 2 (bases 1 to 5206)
1602 AUTHORS Mariotti M, Ridge PG, Zhang Y, Lobanov AV, Pringle TH, Guigo R,
1603 Hatfield DL and Gladyshev VN.
1604 TITLE Composition and evolution of the vertebrate and mammalian
1605 selenoproteomes
1606 JOURNAL PLoS ONE 7 (3), E33066 (2012)
1607 PUBMED 22479358
1608 REFERENCE 3 (bases 1 to 5206)
1609 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
1610 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
1611 TITLE A comprehensive collection of chicken cDNAs
1612 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
1613 PUBMED 12445392
1614 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
1615 reference sequence was derived from AADN04000481.1.
1616 On Jan 5, 2017 this sequence version replaced gi:1071347966.
1617
1618 Summary: This gene encodes a selenoprotein containing the rare
1619 amino acid, selenocysteine (Sec). Sec is encoded by the UGA codon,
1620 which normally signals translation termination. The 3' UTRs of
1621 selenoprotein mRNAs contain a conserved stem-loop structure,
1622 designated the Sec insertion sequence (SECIS) element, that is
1623 necessary for the recognition of UGA as a Sec codon, rather than as
1624 a stop signal. The exact function of this selenoprotein is not
1625 known, but it is thought to have redox activity. [provided by
1626 RefSeq, Jan 2017].
1627
1628 Sequence Note: The RefSeq transcript and protein were derived from
1629 genomic sequence to make the sequence consistent with the reference
1630 genome assembly. The genomic coordinates used for the transcript
1631 record were based on alignments.
1632
1633 ##RefSeq-Attributes-START##
1634 protein contains selenocysteine :: inferred from conservation
1635 ##RefSeq-Attributes-END##
1636 COMPLETENESS: complete on the 3' end.
1637 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1638 1-580 AADN04000481.1 98952-99531
1639 581-784 AADN04000481.1 100620-100823
1640 785-965 AADN04000481.1 101605-101785
1641 966-1096 AADN04000481.1 105511-105641
1642 1097-1377 AADN04000481.1 106033-106313
1643 1378-1528 AADN04000481.1 106627-106777
1644 1529-1714 AADN04000481.1 107159-107344
1645 1715-1871 AADN04000481.1 107853-108009
1646 1872-5206 AADN04000481.1 108660-111994
1647 FEATURES Location/Qualifiers
1648 source 1..5206
1649 /organism="Gallus gallus"
1650 /mol_type="mRNA"
1651 /db_xref="taxon:9031"
1652 /chromosome="1"
1653 /map="1"
1654 /breed="Red Jungle Fowl"
1655 gene 1..5206
1656 /gene="SELENOO"
1657 /gene_synonym="SELO"
1658 /note="selenoprotein O"
1659 /db_xref="CGNC:50587"
1660 /db_xref="GeneID:417745"
1661 CDS 48..2060
1662 /gene="SELENOO"
1663 /gene_synonym="SELO"
1664 /note="UGA stop codon recoded as selenocysteine"
1665 /codon_start=1
1666 /transl_except=(pos:2049..2051,aa:Sec)
1667 /product="selenoprotein O"
1668 /protein_id="NP_001108489.3"
1669 /db_xref="CGNC:50587"
1670 /db_xref="GeneID:417745"
1671 /translation="MAAALRRRRSVLSLRVFCTAMQRSAGPPSRPGSPERADGGGWLS
1672 ALRFDNLALRSLPVDPSEDCAPRAVPGACFARVRPTPLRNPRLVAMSAPALALLGLEA
1673 GGPEAEREAEAALYFSGNRLLPGSEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVRGPR
1674 GARWELQLKGAGITPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGTCVTSDSE
1675 VVRDIFYDGNPKKERCTVVLRIASTFIRFGSFEIFKPPDEYTGRKGPSVNRNDIRIQM
1676 LDYVIGTFYPEIQEAHADNSIQRNAAFFKEITKRTARLVAEWQCVGFCHGVLNTDNMS
1677 IVGLTIDYGPFGFMDRYDPEHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPL
1678 EISELILEEEYDAEFEKHYLQKMRKKLGLIQLELEEDSKLVSELLETMHLTGGDFTNI
1679 FYLLSSFSVDTDPSRLEDFLEKLISQCASVEELRVAFKPQMDPRQLSMMLMLAQSNPQ
1680 LFALIGTKANINKELERIEQFSKLQQLTAADLLSRNKRHWTEWLEKYRVRLHKEVESI
1681 SDVDAWNTERVKVMNSNNPKYILRNYIAQNAIEAAENGDFSEVRNVLKLLENPFQETE
1682 DSTEMETKEEEATATAAACAQATRSRLSYCSKPPLWASELCVTUSS"
1683 misc_feature 2049..2051
1684 /gene="SELENOO"
1685 /gene_synonym="SELO"
1686 /note="Selenocysteine; other site"
1687 stem_loop 2364..2438
1688 /gene="SELENOO"
1689 /gene_synonym="SELO"
1690 /note="SECIS_element"
1691 regulatory 5171..5176
1692 /regulatory_class="polyA_signal_sequence"
1693 /gene="SELENOO"
1694 /gene_synonym="SELO"
1695 polyA_site 5206
1696 /gene="SELENOO"
1697 /gene_synonym="SELO"
1698 ORIGIN
1699 1 ctgcggctgt gcggagcggc gggcggggcc tctccggggg cgggcggatg gccgcggcgc
1700 61 tgcgccgccg ccgctcggtg ctgtcgctgc gcgtcttctg caccgccatg cagcgctcgg
1701 121 cgggtcctcc gtcgcggccg ggcagccccg agcgggcgga cggggggggc tggctgagcg
1702 181 cgctgcgctt cgacaacctg gcgctgcgct cgctgccggt cgacccttcc gaggactgcg
1703 241 ctccgcgagc cgtgcccggc gcctgcttcg cccgggtgcg gcccaccccg ctgcgcaacc
1704 301 cgcggctcgt ggccatgtcg gcgcccgcgc tggcgctgct ggggctggag gccggcggcc
1705 361 ccgaagccga gcgggaggcg gaggccgccc tgtacttcag cgggaaccga ctgctgcccg
1706 421 gctcggagcc cgcggcgcac tgctactgcg ggcaccagtt cggcagcttc gcggggcagc
1707 481 tgggtgacgg cgccgccatc tacctgggcg aggtgcgcgg accgcgcggc gcccgctggg
1708 541 agctgcagct gaagggcgcc gggatcaccc ccttctcccg gcaagccgat ggtcggaagg
1709 601 tcctgcggtc aagcatacgg gagttcctgt gcagcgaggc catgttccac cttggaattc
1710 661 caacaacgag ggctggaacc tgtgtgacat ctgactcaga agttgttcgt gacatatttt
1711 721 atgatggaaa tccaaaaaaa gaaaggtgta cagttgttct gaggatagct tctacattta
1712 781 taagatttgg ttcttttgag attttcaaac cccctgatga gtatacagga cgcaaaggtc
1713 841 ccagcgttaa ccggaatgat attcggatac agatgctgga ttacgtgatc ggcactttct
1714 901 acccagaaat ccaggaggcg catgcagaca acagcattca gaggaatgca gctttcttca
1715 961 aggagataac aaagcggacg gcaagattgg ttgctgagtg gcagtgtgtt ggcttttgcc
1716 1021 atggtgtgct gaatacggat aacatgagca tagttggact aactattgac tatggccctt
1717 1081 ttggatttat ggacagatat gaccctgagc acatctgcaa tggctctgat aacacagggc
1718 1141 gctatgctta caacaaacag ccagagattt gcaagtggaa tctagggaag cttgctgaag
1719 1201 ccttagtccc agagctgccc ttggaaataa gtgagctcat cctggaagaa gaatatgatg
1720 1261 cagaatttga aaaacattat ttgcagaaga tgaggaagaa actaggccta attcagttgg
1721 1321 aattagaaga agatagtaag ctggtgtctg aactacttga aaccatgcat ctcacaggtg
1722 1381 gagacttcac aaatattttt tacttgctga gttcattctc agtagatact gatccttcaa
1723 1441 gactggaaga tttcttagaa aagcttatca gtcagtgtgc ttcagtggaa gaactgagag
1724 1501 ttgctttcaa acctcagatg gatccaagac aactgtcaat gatgttgatg ttggctcagt
1725 1561 ctaatcctca gctgtttgca ctcattggaa caaaagctaa tataaataaa gaattagaac
1726 1621 gcatcgaaca attctctaaa ctgcagcagt taacagcagc tgatttactc agcagaaata
1727 1681 aaaggcactg gacagaatgg ctggagaaat acagagtccg tttacacaaa gaagtagaaa
1728 1741 gcattagtga tgttgatgcc tggaatactg aacgtgtgaa ggttatgaat tccaacaatc
1729 1801 caaaatacat cttgagaaac tacattgctc agaatgccat agaagcagct gaaaatgggg
1730 1861 atttctcaga ggtgagaaat gtattgaaac tcttggaaaa tccattccaa gaaacagaag
1731 1921 attccacgga gatggagaca aaagaggagg aagcaactgc tacagcagct gcttgtgctc
1732 1981 aagcaaccag aagcaggctg tcgtattgca gtaaacctcc actctgggct tcagagctct
1733 2041 gtgttacatg atcttcgtaa ctgccttgtt ttattttttg ctgtaagctg aagactgtga
1734 2101 tcctccttca gcagtgaaga attgagcaag gcaacaatcg aagtgctatt aagttattga
1735 2161 aacaacccta catttggatg cacctacaac agtcttcagc tgtgcttatt ttagagcagt
1736 2221 ttcggatcct tggaacgagc tgataatgct ggacagtctg tacaaatcgt ttctctgtgt
1737 2281 gttttgagac tgaaagcctt ccctttattc ataacacatt gcagtgtttt ctgttgagac
1738 2341 ccgctgactt ttgaacatcc aaatggagtt gttacgtgaa gacaaaagta tcaagtcagg
1739 2401 aatctgatct gtttttgtct gatgtcttaa ctaatagtac ttctaacatc tattcgctgc
1740 2461 tctttctatg cagggatttc tgctcctcta taacagagga atagattcag cgatgcttgt
1741 2521 tttaagccat gattcagtta attagttcat ttattgtgaa cctttaggtt gatatttaat
1742 2581 ctttattttc acagagtctg caggcagggg gctgaggggg aaatgaacaa acgggtgggt
1743 2641 tttgttcttt tttgtgttct attatgtata atacataaag agcagaattg agggagactg
1744 2701 tatatttgca cttgaaaacc ttggtggtga agtcagttca gattcacaat gtttacgtac
1745 2761 agtatacacg tgtgtaaatg tttgcaaaag ccatggatgc agtttgtaag ccagctgtaa
1746 2821 gttgactcag gcaaattcag ttgcctaatt gagcacgaat tgtacgggtg accccagaac
1747 2881 tcacatacgg gttccttgcg ttgatctgtg tactgctgcc acagttctcc ttgagagaag
1748 2941 cacgcagctg ggatgcctgt tcacagtggg cagtgagatg cttccattcc cactgtggtc
1749 3001 cggcgtgtct tactttgctt ctgtggcttt tgagaagttt tacactgtaa agagaggaac
1750 3061 gtactacttg aggaatgtgc tatttgagca gtgtgtaaaa gattctagag gaggacggga
1751 3121 gctgacttgc ttgaaaatgt attgataata tttcagttgg tttcatttga gattttaggg
1752 3181 ggaaatctgt ttcttctatt gccatgtcgg caaaaatgaa agaaggtccc aagttaaagg
1753 3241 tttgactgtg ctttctgagc ttatttctga agggctctgg ttcacatatc cttgtgcaag
1754 3301 tctgatgtgg tgcaaaggtt tctcttttct aaagaggcca ctgtcttcca ctgtgagttt
1755 3361 aagggcagtc tactaaatag ctctttgccc ctgtacaggt caggtattag ctcaggttga
1756 3421 aatgtgctct tttaagtctt cctcaaataa cgagctatgg agaaacaggg agaaagctgg
1757 3481 actgctgcct gtccagttct gctaataatg agtttgttct tgctgccgca gtaaataggt
1758 3541 gatgttttga atgcagacat tcattctgtc ttgtgtttga cttagagaag ctgatgctaa
1759 3601 gtaacgtctg tggcaaatga gaatctgaca aacacggcac ctcctgtgac atctcagagt
1760 3661 cctgactgaa aaggatcaat gtgaagaagt gtctgtccag cttggggcag aacggtgcat
1761 3721 gtggaagagg atgtgccttc aagaaggcag cagtaatgtg ggggctggag tggatgatcc
1762 3781 cttccagccc gtacagttct gtgattctgt aatgcttgct ggtgcagctg gttgtctcct
1763 3841 ggaagcaacc catttctgga ggagtttgac agctgaagtg accattatca ggcattatcc
1764 3901 ttcattgaac atggggactt ctgacaccaa accacctcat ggaagctctt actgcgaggc
1765 3961 agggctgggt aaggactgcg ccagggaagt ggtctaaagt ggtgatttta aaccatacct
1766 4021 cagggaatta tgacgttact ttattttggg gtatgagtag atcttgttaa tgcatggagg
1767 4081 agaatggtat tatagcactg tatttggaca caggagatgg tgactactga attagtttcc
1768 4141 atataaagca gcacattaat ttgccattgt gataccaaac tcatggagag agaaagaggg
1769 4201 agatactttg aaatagctag caaatttatc cttaaaaagg gatgccaaat gtaaaagtgt
1770 4261 gaagaatgaa aacgtagggt acattgccaa ctgaatgcat tcttaagtgt gaatcaggtg
1771 4321 caagaggcct ggaaagcttg aaatcatgac tagagaaggc tcatggtgtg gctgcgttgg
1772 4381 tgtgccactt aaggctgtgt ttgtcacagt tacaccgtgc tcaccagctg tgagtacgct
1773 4441 ctccatgttt ctgccagggc tgagctgttg gcgttgaact gcttggtttc tcagtgcatg
1774 4501 caataatgct ctgtatttga gtaacagtga caactggaag cccaatagaa tactcgtgct
1775 4561 cttctagcgc cttcattcca aaaggcaaat gagtttcagc tcatcgatag tcacttcgtt
1776 4621 ctgttcccag agcagtgtgg aagtgggagc ttgttaagga cagttcaacg aagcttagcc
1777 4681 tagctaagaa cttcatcttt taggtcagct cttcagagag aaggaaatac agcttgtaac
1778 4741 atttgagagt ctgaatattt gaatcataaa tcactgcttg tttgtttttt tttttagagc
1779 4801 tcatatgtgc tgtacttagg cctgaaaata attatttctg atcagaaact ctgcttatag
1780 4861 aaaaagactt ttaggttcag aatgaatttg tgactcttca acaccaccag tggtgttctt
1781 4921 tggaagccct ttggttgcac tttggtcctc tgcctataca acccgacccg ccattgcctg
1782 4981 aaggcaggtg gctcccaggg gcccagcagc ctcacactgc agtggggctc ctcttgtgac
1783 5041 tgagatctca ccatcactgc ttcctcagct tgtagagcta tcattgcctc atgtttgact
1784 5101 gtcagtgttc tctttggaac gtttgtttgt ttctcttcag acaaatgctg ctactgtctt
1785 5161 taattctttt attaaaagaa aaaatacatc cgaaatgcaa ttttaa
1786 //
1787
1788 LOCUS NM_204843 2593 bp mRNA linear VRT 11-JAN-2017
1789 DEFINITION Gallus gallus RAP1 GTPase activating protein 1 (RAP1GAP1), mRNA.
1790 ACCESSION NM_204843
1791 VERSION NM_204843.3
1792 KEYWORDS RefSeq.
1793 SOURCE Gallus gallus (chicken)
1794 ORGANISM Gallus gallus
1795 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1796 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1797 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1798 Phasianidae; Phasianinae; Gallus.
1799 REFERENCE 1 (bases 1 to 2593)
1800 AUTHORS Jordan JD, Carey KD, Stork PJ and Iyengar R.
1801 TITLE Modulation of rap activity by direct interaction of Galpha(o) with
1802 Rap1 GTPase-activating protein
1803 JOURNAL J. Biol. Chem. 274 (31), 21507-21510 (1999)
1804 PUBMED 10419452
1805 COMMENT VALIDATED REFSEQ: This record has undergone validation or
1806 preliminary review. The reference sequence was derived from
1807 AADN04000390.1.
1808 On Dec 24, 2016 this sequence version replaced gi:933123823.
1809
1810 Sequence Note: The RefSeq transcript and protein were derived from
1811 genomic sequence to make the sequence consistent with the reference
1812 genome assembly. The genomic coordinates used for the transcript
1813 record were based on alignments.
1814
1815 ##Evidence-Data-START##
1816 RNAseq introns :: single sample supports all introns SAMEA2201363,
1817 SAMEA2201366 [ECO:0000348]
1818 ##Evidence-Data-END##
1819 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1820 1-57 AADN04000390.1 662088-662144
1821 58-151 AADN04000390.1 667485-667578
1822 152-187 AADN04000390.1 668072-668107
1823 188-235 AADN04000390.1 670735-670782
1824 236-274 AADN04000390.1 671444-671482
1825 275-460 AADN04000390.1 671587-671772
1826 461-564 AADN04000390.1 682414-682517
1827 565-643 AADN04000390.1 684441-684519
1828 644-697 AADN04000390.1 684831-684884
1829 698-781 AADN04000390.1 684969-685052
1830 782-882 AADN04000390.1 685308-685408
1831 883-1012 AADN04000390.1 686679-686808
1832 1013-1168 AADN04000390.1 687059-687214
1833 1169-1240 AADN04000390.1 691346-691417
1834 1241-1327 AADN04000390.1 691614-691700
1835 1328-1462 AADN04000390.1 692326-692460
1836 1463-1609 AADN04000390.1 694002-694148
1837 1610-1713 AADN04000390.1 695372-695475
1838 1714-1830 AADN04000390.1 697551-697667
1839 1831-2593 AADN04000390.1 700093-700855
1840 FEATURES Location/Qualifiers
1841 source 1..2593
1842 /organism="Gallus gallus"
1843 /mol_type="mRNA"
1844 /db_xref="taxon:9031"
1845 /chromosome="1"
1846 /map="1"
1847 /breed="Red Jungle Fowl"
1848 gene 1..2593
1849 /gene="RAP1GAP1"
1850 /gene_synonym="RAP1; RAP1GA1; RAP1GAP"
1851 /note="RAP1 GTPase activating protein 1"
1852 /db_xref="CGNC:10901"
1853 /db_xref="GeneID:395647"
1854 CDS 170..1840
1855 /gene="RAP1GAP1"
1856 /gene_synonym="RAP1; RAP1GA1; RAP1GAP"
1857 /note="GTPase activating protein Rap1-GAP; GTPase
1858 activating protein 1"
1859 /codon_start=1
1860 /product="RAP1 GTPase activating protein"
1861 /protein_id="NP_990174.1"
1862 /db_xref="CGNC:10901"
1863 /db_xref="GeneID:395647"
1864 /translation="MIEKMQGSRLDEQRCSLPAPLKTEEEYIPYPSIHEVLQKGWPYP
1865 LIILPQFGGYWIEGTSHNLSSPALSDVPFPWSVKVKLESDPTAKLYRKHFLGKEHQNF
1866 YSSDVSLGYLILSVKYEQSEKQENLRLLLRTRTGTKHDLIPISCLNEFPNAVQMAKLL
1867 CENVNVERFFPVLYPKASQLIVAFDEHVISNNFKFGVIYQKPGQTTEEEVFSNTEESL
1868 GFLEFLDFLGDKIQLQDFRGFRGGLDVIRGQTGTESVYTNFRGKEIMFHVSTKLPFAE
1869 GDSQQLQRKRHIGNDIVAIIFQDESTPFVPDMIASNFLHAYVVVQLTHSSSGETLYKV
1870 SVTARDDVPFFGPSLPNPAIFRKSTEFREFLLVKLINAEYSCYRAEKFAKLKERTRSA
1871 LLESLFEELQLRSRCMMGLPVEEDDKTENGSGGFFENFKRVIRGRSQSLDTMGISMRK
1872 QQPATMPSRPTTAGLALSQSVAEGPKAIAASFALPGRSPSRTRTSRFHGRRSSAIGIE
1873 NIQEEKSRDIAERIQKVVDSPETLLDLKSDGSSSPSSPEFPSRKSKHI"
1874 ORIGIN
1875 1 agctgggttc cccgtctcca tccgcttgcc agctggggat gagagaacct tgctcaggag
1876 61 gtctgaggag ggagtgtgtt gtgtcagtaa tgttatagat tctcctatcc aaggcattcc
1877 121 atctgctctt gcttttgctg ctcccaacaa gactgtggac ttgtttgaga tgattgaaaa
1878 181 aatgcagggg agtcgtctgg atgaacaaag atgttccctt ccagctcctc tcaagacaga
1879 241 agaagagtat attccttacc ccagcatcca tgaggtatta cagaaggggt ggccatatcc
1880 301 cctcattatc ttaccccagt ttgggggcta ctggattgaa gggacaagcc acaacctctc
1881 361 cagtccagct ctgtctgatg taccctttcc ctggagtgtt aaagtgaaac tggagagcga
1882 421 ccccacagcc aagctatacc gcaagcattt cctagggaag gagcaccaga acttttattc
1883 481 cagtgatgtg tccttgggct acttgatact ttctgtgaag tatgaacagt ctgagaaaca
1884 541 ggaaaatcta cgtttgttgc tgaggacacg aactggtacc aaacatgatc tgatccccat
1885 601 ttcctgtcta aatgagtttc ctaatgctgt ccagatggca aagctactgt gtgaaaatgt
1886 661 gaatgttgaa cgcttctttc ctgtcctcta tcccaaggct tcacagctta ttgttgcatt
1887 721 tgatgaacat gtcataagca ataacttcaa atttggggta atctaccaga aacctggaca
1888 781 gacaactgaa gaggaagtct tcagtaacac ggaagagagt ctgggattcc tggagttctt
1889 841 ggatttcctt ggtgacaaga ttcagctgca ggatttccgt gggttccggg gaggtttgga
1890 901 tgtcatcaga ggtcaaacgg gcaccgaatc agtttataca aatttccggg gcaaagaaat
1891 961 catgtttcat gtatctacaa aactgccctt cgctgaagga gattcccaac agcttcagcg
1892 1021 gaagcgtcac attgggaatg acattgtagc catcatcttc caggatgaaa gcacaccttt
1893 1081 tgtgcctgat atgatcgctt ctaatttcct acatgcatat gtggtagttc agctcactca
1894 1141 cagcagtagt ggggagaccc tctacaaggt ttcagtcaca gcccgagatg atgtgccctt
1895 1201 ctttggacct tctctaccaa atccagccat atttagaaag agtacagagt ttcgtgaatt
1896 1261 ccttctggtc aagctcatca atgctgaata cagctgctat agagctgaaa aatttgctaa
1897 1321 actaaaggag agaacccgaa gtgctctctt ggagagcctt tttgaggagc tgcagcttcg
1898 1381 cagccgttgt atgatgggac tgcccgtaga agaagatgac aagacagaga atggcagcgg
1899 1441 gggcttcttt gagaatttca agcgggtgat cagaggccgc agccagagcc tggataccat
1900 1501 ggggatatcc atgagaaagc agcagccagc caccatgccc agccgcccga cgacagctgg
1901 1561 ccttgctctg agccagagtg ttgccgaggg ccctaaggcc attgctgcgt cttttgcctt
1902 1621 gcctggtagg agcccatcac gtactcgaac cagccgtttc catgggcgac ggagtagtgc
1903 1681 cattggcatt gagaacatac aggaggaaaa gagcagagac attgcagaga ggatacagaa
1904 1741 ggtggtagac agtccagaaa ctttgcttga cctgaaatct gatggatcat ccagtcccag
1905 1801 ttccccagag ttccccagca ggaagagcaa acacatctga atggggacat caagccaatc
1906 1861 aggagtggac cggatgctac taattgctta cctcactgaa gatactggca ggacatttgg
1907 1921 ggtgaaatga gagtactggc taaaaggaac acgaacttag aggacctcaa ggactgtgga
1908 1981 aagaccaagt gacaccacat aatgcttcac tggcagtccc tggagcagga atcacggaga
1909 2041 gggagaagga cagagagatt ctattggagc attttgactc tagggccttc ccattgtcca
1910 2101 atcagcagtc actgaaccag actctacaaa tgctggggga aaggaggcta ccttgagcat
1911 2161 ctcttcttct cttcccttac atattcaaaa agagaattaa gtcaaaagca gaacacactt
1912 2221 ccacctctgt ctctagtaag cactagagat ggattacata gtttaggaag tgcaacgcaa
1913 2281 agaaagagga tgaagaaatc tgctgaggaa ggatgctgag aacaggatat ttagtggaaa
1914 2341 tttaggtccc agctcatttt attgattggc tctgacaaga gagaagtatg ttagccttca
1915 2401 tttccttcaa aatatatttc ctaacttctt gaggaaatat cttcggccta tactggcctt
1916 2461 gcctttattg tcctctctat tgcatgctgg catgtaatat gcctggggct ttaggtttca
1917 2521 gtactgcttg taggtcgaga ccggccacgt tttgcagtgt ttctgaagga ataaatatat
1918 2581 ttaatatatt gaa
1919 //
1920
1921 LOCUS NM_001347710 1730 bp mRNA linear VRT 11-JAN-2017
1922 DEFINITION Gallus gallus solute carrier family 2 member 11-like 1 (SLC2A11L1),
1923 mRNA.
1924 ACCESSION NM_001347710
1925 VERSION NM_001347710.1
1926 KEYWORDS RefSeq.
1927 SOURCE Gallus gallus (chicken)
1928 ORGANISM Gallus gallus
1929 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
1930 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
1931 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
1932 Phasianidae; Phasianinae; Gallus.
1933 COMMENT INFERRED REFSEQ: This record is predicted by genome sequence
1934 analysis and is not yet supported by experimental evidence. The
1935 reference sequence was derived from AADN04000193.1.
1936
1937 Sequence Note: The RefSeq transcript and protein were derived from
1938 genomic sequence to make the sequence consistent with the reference
1939 genome assembly. The genomic coordinates used for the transcript
1940 record were based on alignments.
1941 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1942 1-37 AADN04000193.1 2454708-2454744 c
1943 38-136 AADN04000193.1 2453259-2453357 c
1944 137-297 AADN04000193.1 2452126-2452286 c
1945 298-422 AADN04000193.1 2451462-2451586 c
1946 423-552 AADN04000193.1 2451106-2451235 c
1947 553-701 AADN04000193.1 2450715-2450863 c
1948 702-889 AADN04000193.1 2449978-2450165 c
1949 890-1000 AADN04000193.1 2449289-2449399 c
1950 1001-1102 AADN04000193.1 2448895-2448996 c
1951 1103-1178 AADN04000193.1 2448469-2448544 c
1952 1179-1306 AADN04000193.1 2448013-2448140 c
1953 1307-1730 AADN04000193.1 2446851-2447274 c
1954 FEATURES Location/Qualifiers
1955 source 1..1730
1956 /organism="Gallus gallus"
1957 /mol_type="mRNA"
1958 /db_xref="taxon:9031"
1959 /chromosome="15"
1960 /map="15"
1961 /breed="Red Jungle Fowl"
1962 gene 1..1730
1963 /gene="SLC2A11L1"
1964 /note="solute carrier family 2 member 11-like 1"
1965 /db_xref="CGNC:50386"
1966 /db_xref="GeneID:416935"
1967 misc_feature 14..16
1968 /gene="SLC2A11L1"
1969 /note="upstream in-frame stop codon"
1970 CDS 32..1513
1971 /gene="SLC2A11L1"
1972 /note="solute carrier family 2, facilitated glucose
1973 transporter member 11-like 1"
1974 /codon_start=1
1975 /product="solute carrier family 2, facilitated glucose
1976 transporter member 11-like"
1977 /protein_id="NP_001334639.1"
1978 /db_xref="CGNC:50386"
1979 /db_xref="GeneID:416935"
1980 /translation="MQKMSYNLFLLAFVLGIGGTFQYGLQISIINSPAEYIKSFIRET
1981 WLKRYGSSPSEEITTLMWSFIVSIYTIGGLLGSMCVKYMSVTFGRKKSMLLANIPALL
1982 SATLMALSRLSGSFEMIIIGRLFAGVCAGLGLNIHIMYVGECAPQKLRGVIAITASTA
1983 IAVGKFAGFALGLREVLGVEALWPVLMAANAIPALIQLLTLPFFPDSPRYLLIDKKDK
1984 EGCIKAVKQLWGDGDHMAEVDDMIAEQEAIRGEKSKSVCDLVRDKSVRWQFITLFLVS
1985 SCMQLIGVNVVYFYAYNVFLKVGLSPSQTRYVSLGVGITEILTTALCGFLVDRAGRKA
1986 LLWKSHTAMALALGLLTITLALQDSFSWTPYCSAALIFIFIMSFGLGPAGVLCPLPTE
1987 IFIQSYRPAAYAFNGASNWIQLFFLGLLFPFIVEGLGSFCFIIFLAYCLSMAIFVYLV
1988 VPETKGKTMLQIMEEFNRLNYRGKKGQEALQQNNCSLTTVTRL"
1989 ORIGIN
1990 1 tcagcctgca agctgagatg accacctttg catgcaaaaa atgagctaca atctcttcct
1991 61 cctggctttt gtcctgggca ttggtggaac tttccagtat gggttgcaga tctccattat
1992 121 caactctcct gccgagtaca tcaagagttt catacgtgag acctggctga agagatacgg
1993 181 atcttctccc agtgaagaga taactacttt gatgtggtcc tttattgtgt ccatttacac
1994 241 cattggtggg ctcctgggct ccatgtgtgt caaatacatg tctgttacat ttggaaggaa
1995 301 gaagtccatg ctgcttgcca acatccctgc tctgttgagt gcaactctca tggcactcag
1996 361 tcggctgtct gggtcctttg agatgatcat cattgggaga ttatttgctg gagtgtgtgc
1997 421 aggtttaggt ctgaatatcc atatcatgta tgtgggggag tgtgccccac agaagctgcg
1998 481 tggggtgatt gccataactg cttccactgc cattgccgtg ggaaagtttg caggatttgc
1999 541 tctgggtctc agagaagttc tgggagtaga agctctgtgg cccgttctta tggcagcaaa
2000 601 tgcaattcct gccctcattc agctgctcac cctccccttc ttcccagact ctccccgcta
2001 661 cctgctcatt gacaaaaagg acaaggaagg ctgcatcaaa gctgtgaagc agctctgggg
2002 721 ggatggtgac cacatggccg aagtggatga catgattgca gagcaagaag ccatccgtgg
2003 781 ggagaaatct aagagtgttt gtgaccttgt tcgtgacaaa tccgtccgtt ggcagttcat
2004 841 cactctcttt cttgtctcct catgcatgca gttaattgga gtcaatgtgg tttactttta
2005 901 tgcatacaat gtcttcttaa aagttggact ctccccttcc caaacccgct acgtctccct
2006 961 gggagttggg atcaccgaga tcctcaccac agctctgtgt ggcttcctgg tggaccgtgc
2007 1021 tgggaggaag gcactgctat ggaaatccca cactgctatg gccttggcgt taggacttct
2008 1081 caccatcaca cttgctctac aggattcttt ctcctggaca ccatattgct ctgctgcact
2009 1141 catttttatc ttcatcatga gcttcggtct tgggccagct ggagtattat gccccctgcc
2010 1201 cacagaaata tttattcagt catacagacc agctgcttat gcttttaatg gtgcttcaaa
2011 1261 ctggattcag ctcttctttc ttggactttt gttccctttc attgtggaag gccttggtag
2012 1321 tttttgtttc atcattttcc tggcatactg tctgtccatg gctatctttg tctacctggt
2013 1381 agtgccagag actaaaggaa agaccatgtt gcagatcatg gaggagttca accgcctgaa
2014 1441 ctaccgcgga aagaagggac aggaagccct acagcagaat aactgctcat tgacaactgt
2015 1501 tactagactt tagtgacaaa ctctccactc catattctgt tattttatta ctgttgtgac
2016 1561 cagaagcctc actaaacaaa agagattcta ttgctcctag acagtacaaa tgtgtattaa
2017 1621 aagtagtggc ctgctgtgca ggatgaactt ggtggttccc tccaactgcc gaaatatgaa
2018 1681 ctgaattaaa tgctcagcac aaaaagaagg aaggaaggaa ggaaggaagg
2019 //
2020
2021 LOCUS NM_001328355 1672 bp mRNA linear VRT 12-JAN-2017
2022 DEFINITION Gallus gallus alanyl-tRNA synthetase domain containing 1 (AARSD1),
2023 mRNA.
2024 ACCESSION NM_001328355 XM_015299626
2025 VERSION NM_001328355.1
2026 KEYWORDS RefSeq.
2027 SOURCE Gallus gallus (chicken)
2028 ORGANISM Gallus gallus
2029 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2030 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2031 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2032 Phasianidae; Phasianinae; Gallus.
2033 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2034 preliminary review. The reference sequence was derived from
2035 AADN04000464.1.
2036 On Jun 16, 2016 this sequence version replaced gi:971435455.
2037
2038 Sequence Note: The RefSeq transcript and protein were derived from
2039 genomic sequence to make the sequence consistent with the reference
2040 genome assembly. The genomic coordinates used for the transcript
2041 record were based on alignments.
2042
2043 ##Evidence-Data-START##
2044 RNAseq introns :: mixed/partial sample support SAMEA2201357,
2045 SAMEA2201358 [ECO:0000350]
2046 ##Evidence-Data-END##
2047 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2048 1-137 AADN04000464.1 140118-140254
2049 138-260 AADN04000464.1 140338-140460
2050 261-420 AADN04000464.1 140531-140690
2051 421-478 AADN04000464.1 141038-141095
2052 479-635 AADN04000464.1 141448-141604
2053 636-752 AADN04000464.1 141702-141818
2054 753-883 AADN04000464.1 142010-142140
2055 884-950 AADN04000464.1 142305-142371
2056 951-1042 AADN04000464.1 142536-142627
2057 1043-1097 AADN04000464.1 143233-143287
2058 1098-1192 AADN04000464.1 143746-143840
2059 1193-1672 AADN04000464.1 144002-144481
2060 FEATURES Location/Qualifiers
2061 source 1..1672
2062 /organism="Gallus gallus"
2063 /mol_type="mRNA"
2064 /db_xref="taxon:9031"
2065 /chromosome="27"
2066 /map="27"
2067 /breed="Red Jungle Fowl"
2068 gene 1..1672
2069 /gene="AARSD1"
2070 /note="alanyl-tRNA synthetase domain containing 1"
2071 /db_xref="CGNC:72048"
2072 /db_xref="GeneID:107049007"
2073 CDS 99..1328
2074 /gene="AARSD1"
2075 /note="alanyl-tRNA editing protein Aarsd1-like"
2076 /codon_start=1
2077 /product="alanyl-tRNA editing protein Aarsd1"
2078 /protein_id="NP_001315284.1"
2079 /db_xref="CGNC:72048"
2080 /db_xref="GeneID:107049007"
2081 /translation="MVFRCQRDSWARQFATRVVSCREAELRPESGGEPMRGFQVVLED
2082 TILFPEGGGQPDDRGLIGAVPVLRVTRRGAEAVHFVETALEPGSAVLLSLDWERRFDH
2083 MQQHSGQHLITAIAEQMFGFKTTSWELGRQQSVIELDTPSMTTEQMEALEQSVNEKIR
2084 ERIPVTVRELAADDPEVETVRSRGLPGDHTGPVRVVDIEGIDSNMCCGTHVSNLSDLQ
2085 VIKLICTEKGKKNKTNLVFLAGNRVLKSVEQSHRTEKALTSLLKNGPGEHVEAVKRLQ
2086 SSVKLLQKNNLNLLRDIAVLIARDFKSKPVQSPLFVLHRKEGDSEFMNIIANEIGKEE
2087 TLLFLTVGDEKEAGLFLLAGSVEAVENLGPRVAELLEGKGAGKRGRYQGKATKMSRRG
2088 EVQALLQEFISQQTDEA"
2089 ORIGIN
2090 1 cgcatccgcc gctctgcagg ccccgcccgc cggtttctcc cgccggccgt ccgctgttcc
2091 61 tggttcgccg tctctccgca gcacggggtg ccgccgccat ggtgttccgg tgccagcggg
2092 121 acagctgggc tcggcagttc gccaccaggg tggtgtcgtg tcgggaggcc gagctgcggc
2093 181 ctgagagcgg tggggaaccg atgcgcggct tccaggtggt gctggaggac acgatcctct
2094 241 tccccgaggg cggcgggcag cccgatgacc gcggcctcat cggcgccgtc ccggtgctgc
2095 301 gcgtcacccg gcgcggcgcc gaggccgtgc acttcgtgga gacggcgctg gagccgggca
2096 361 gcgccgtgct gctgtcgttg gactgggagc gccgcttcga tcacatgcag cagcactcgg
2097 421 gacagcacct catcactgcc atagcggagc agatgtttgg attcaaaaca acttcatggg
2098 481 agctgggccg gcaacagagt gtcattgagc tggacacccc ctccatgacc acggagcaaa
2099 541 tggaggccct ggagcagagt gtgaatgaga agatccggga gaggatacct gtgacagtgc
2100 601 gggaactggc tgcagatgac cctgaggttg aaacagtgag aagccgcggc ttgccaggtg
2101 661 accacacggg gccagttcga gttgtagaca ttgaaggcat agactccaac atgtgctgtg
2102 721 ggactcatgt ctccaacctg agtgacttgc aggttattaa acttatttgc accgagaaag
2103 781 ggaaaaagaa caaaaccaac ttggttttcc tggcaggaaa tagagtgctg aagtcagttg
2104 841 aacaaagtca ccgtactgag aaggccctaa cctcactgct gaaaaatgga ccgggtgaac
2105 901 atgtagaggc tgtgaagaga ttgcagagtt ctgtgaaact tcttcagaag aataatttga
2106 961 acctgctaag agacattgcg gttttgatag cccgggattt caaaagcaaa cctgttcaaa
2107 1021 gtccgctgtt tgtcttacac aggaaagagg gtgactctga gtttatgaac atcatcgcta
2108 1081 atgagattgg gaaagaggaa accctgctgt tcctgactgt gggagatgaa aaggaagcag
2109 1141 gactctttct tctagctgga tctgttgaag cagttgagaa tttaggtccc agggtggcag
2110 1201 agctgctgga aggcaaagga gctgggaagc gaggccgcta ccagggcaag gcaaccaaga
2111 1261 tgagtcgtcg aggagaagtg caagctctgc tccaggaatt catcagtcaa caaacagatg
2112 1321 aagcgtaaag aaagaatttt gaaagtaggg ctgtcatccc tgctttgtag gatctccact
2113 1381 aagttctctc ccagagaata aagacaaaaa aagtcccatg taaaatccca tggagttagg
2114 1441 aaggactcct actcaatgtc tctccagctt gccatttctg ccagcggttc ccaaggctgc
2115 1501 tacaacttca gctgcagaaa caaaaggggc actgaagagc tgtggtcaaa aagcacctga
2116 1561 tacgggactg ggtagtgttg ttttttttcc cctcctagaa caggcatggc aggtttagtc
2117 1621 tggatgttga taataaacag aaaaataaag acagacaaat ctccatccta aa
2118 //
2119
2120 LOCUS NM_001328354 747 bp mRNA linear VRT 12-JAN-2017
2121 DEFINITION Gallus gallus prostaglandin E synthase 3 (cytosolic)-like
2122 (PTGES3L), mRNA.
2123 ACCESSION NM_001328354 XM_015299630
2124 VERSION NM_001328354.1
2125 KEYWORDS RefSeq.
2126 SOURCE Gallus gallus (chicken)
2127 ORGANISM Gallus gallus
2128 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2129 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2130 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2131 Phasianidae; Phasianinae; Gallus.
2132 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2133 preliminary review. The reference sequence was derived from
2134 AADN04000464.1.
2135 On Jun 16, 2016 this sequence version replaced gi:971435462.
2136
2137 Sequence Note: This RefSeq record was created from transcript and
2138 genomic sequence data to make the sequence consistent with the
2139 reference genome assembly. The genomic coordinates used for the
2140 transcript record were based on transcript alignments.
2141
2142 ##Evidence-Data-START##
2143 RNAseq introns :: single sample supports all introns SAMEA2201358
2144 [ECO:0000348]
2145 ##Evidence-Data-END##
2146 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2147 1-94 AADN04000464.1 137996-138089
2148 95-208 AADN04000464.1 138453-138566
2149 209-275 AADN04000464.1 138674-138740
2150 276-374 AADN04000464.1 138937-139035
2151 375-464 AADN04000464.1 139379-139468
2152 465-518 AADN04000464.1 139557-139610
2153 519-747 AADN04000464.1 139788-140016
2154 FEATURES Location/Qualifiers
2155 source 1..747
2156 /organism="Gallus gallus"
2157 /mol_type="mRNA"
2158 /db_xref="taxon:9031"
2159 /chromosome="27"
2160 /map="27"
2161 /breed="Red Jungle Fowl"
2162 gene 1..747
2163 /gene="PTGES3L"
2164 /gene_synonym="PTGES3L-AARSD1"
2165 /note="prostaglandin E synthase 3 (cytosolic)-like"
2166 /db_xref="CGNC:2079"
2167 /db_xref="GeneID:420013"
2168 CDS 87..530
2169 /gene="PTGES3L"
2170 /gene_synonym="PTGES3L-AARSD1"
2171 /note="PTGES3L-AARSD1 readthrough"
2172 /codon_start=1
2173 /product="putative protein PTGES3L"
2174 /protein_id="NP_001315283.1"
2175 /db_xref="CGNC:2079"
2176 /db_xref="GeneID:420013"
2177 /translation="MARQHAKTLWYDRPRYVFLEFCVEDSTDVQVVIEDHRLVFSCKN
2178 ADGVEFYNEINLYARVNSKDSREKRSDRSITCFMRKWKEKVAWPRITKENIKPAWLSV
2179 DFDNWRDWEGDEEVERAMVEEYAELLQKVTDKAPPPTMDDLDDDL"
2180 ORIGIN
2181 1 ccttgaggct gggagggagc gggaggagaa gcgcccggcc ccgttcccga cggtccgaag
2182 61 tagtgcggcg cggggccggc acggacatgg cgaggcaaca cgcaaagaca ctgtggtatg
2183 121 accgcccacg gtatgttttc ctggagttct gcgtggagga cagcacagat gttcaggttg
2184 181 tcattgagga ccaccgattg gtgttcagct gcaaaaacgc agatggagta gaattctaca
2185 241 atgagatcaa cctgtatgcc agggtgaact ccaaggactc acgagagaaa cgttctgacc
2186 301 gctccatcac atgctttatg aggaagtgga aggagaaagt ggcctggccc cgcatcacca
2187 361 aggagaacat caagccagcc tggctctccg ttgactttga caactggcga gactgggaag
2188 421 gggatgagga ggtggagagg gccatggtgg aggagtacgc agagctcctg cagaaggtga
2189 481 cggacaaggc cccccccccg accatggatg acctggatga cgacctctga agcccagctc
2190 541 ctcatagaca gcgcggctcc tcaaagccct ccccgtgcgc cagcagcgca cagcaacgag
2191 601 ccgggacacg ggcgaggaaa gcggagcccc gaggaacgac gccggtttgc ggcagagtgc
2192 661 ggcggacccc aaagcacggc ggcgagagct gcacgctctt ccagtgccga ttacgcgcgg
2193 721 ggcaataaac gcgaaccgct gccgcga
2194 //
2195
2196 LOCUS NM_001278102 1362 bp mRNA linear VRT 11-JAN-2017
2197 DEFINITION Gallus gallus adipogenesis associated, Mth938 domain containing
2198 (AAMDC), transcript variant 2, mRNA.
2199 ACCESSION NM_001278102
2200 VERSION NM_001278102.2
2201 KEYWORDS RefSeq.
2202 SOURCE Gallus gallus (chicken)
2203 ORGANISM Gallus gallus
2204 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2205 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2206 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2207 Phasianidae; Phasianinae; Gallus.
2208 REFERENCE 1 (bases 1 to 1362)
2209 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
2210 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
2211 TITLE A comprehensive collection of chicken cDNAs
2212 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
2213 PUBMED 12445392
2214 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2215 preliminary review. The reference sequence was derived from
2216 BX930541.1, BU315144.1 and AADN04000352.1.
2217 On Feb 11, 2016 this sequence version replaced gi:493796791.
2218
2219 Transcript Variant: This variant (2) lacks an alternate exon in the
2220 5' UTR compared to variant 1. All three variants encode the same
2221 protein.
2222
2223 Sequence Note: This RefSeq record was created from transcript and
2224 genomic sequence data from different strains to make the sequence
2225 consistent with the reference genome assembly. The genomic
2226 coordinates used for the transcript record were based on transcript
2227 alignments.
2228
2229 ##Evidence-Data-START##
2230 Transcript exon combination :: BU315144.1, BM488034.1 [ECO:0000332]
2231 RNAseq introns :: single sample supports all introns
2232 SAMEA2201376 [ECO:0000348]
2233 ##Evidence-Data-END##
2234 COMPLETENESS: complete on the 3' end.
2235 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2236 1-50 BX930541.1 1-50
2237 51-713 BU315144.1 1-663
2238 714-1362 AADN04000352.1 548393-549041 c
2239 FEATURES Location/Qualifiers
2240 source 1..1362
2241 /organism="Gallus gallus"
2242 /mol_type="mRNA"
2243 /db_xref="taxon:9031"
2244 /chromosome="1"
2245 /map="1"
2246 /breed="Leghorn"
2247 gene 1..1362
2248 /gene="AAMDC"
2249 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2250 /note="adipogenesis associated, Mth938 domain containing"
2251 /db_xref="CGNC:52510"
2252 /db_xref="GeneID:425610"
2253 misc_feature 117..119
2254 /gene="AAMDC"
2255 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2256 /note="upstream in-frame stop codon"
2257 CDS 156..524
2258 /gene="AAMDC"
2259 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2260 /note="UPF0366 protein C11orf67; adipogenesis associated
2261 Mth938 domain-containing protein"
2262 /codon_start=1
2263 /product="mth938 domain-containing protein"
2264 /protein_id="NP_001265031.1"
2265 /db_xref="CGNC:52510"
2266 /db_xref="GeneID:425610"
2267 /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
2268 HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
2269 EYNALAAQGVKVGGVFHSTC"
2270 ORIGIN
2271 1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
2272 61 gggtcgcgcg gttcagaagg tcgttacctt cgagacgcag ctgctggcag ccacactgat
2273 121 caaaagcatt tccaagactt tggttcaact cagtgatgtc ttcccctgaa attgcttccc
2274 181 tgtcttgggg acagatgaag gtgaaaggct gctctacaac atacaaggac tgcaaagtat
2275 241 ggccaggagg aagtcggacc tgggattgga gagaaactgg gactaatcat tctccaggag
2276 301 tgcagccggc tgaccttgaa gaagttgtca agaagggtgt taaaactctc gtgattggcc
2277 361 gtggcatgag tgaggctctg caggttcctc catctaccgt ggactatctc aagaaaaatg
2278 421 ggattgatgt gttggtgttg cagacagaga aggcagtggc agagtacaat gccctggctg
2279 481 ctcagggtgt caaagtgggg ggagtcttcc actcaacgtg ctgaagcact gctgctttgc
2280 541 agcctgccct gacctcagcc aagtgctggg catgccttgg ctgcatcaaa ttacacccag
2281 601 cacagtgggg aggtgcgtgc caatgcatta atgtgcgctg caaagctgaa atgcaagggc
2282 661 agtttatgag ttcagggttt aaacagagtg ctgttaatga aatcttttaa ctgcagaaca
2283 721 gtttgcatac gttcttggga ttgacctaat cttcctctga agactgtctg cattctggtt
2284 781 acttttaggc taaattaatg aactctggtt aatttttggc taaattaaga ctcttaagtt
2285 841 gtgaatgctt tgattagaaa atggtgcgga attacattaa tagttactgt attgtagcca
2286 901 gaaaacatat gatgacgaca gtcaagtggt aggtatgaag tagtggtaaa ggatcacttt
2287 961 attaatgagt ttagaaaaaa gacaaaacac aaggcagccc ctgagcaaca gctctgcctc
2288 1021 ctgctggtga actcactcag tgcataactt gacacttctt tacgccagac atagaaaaag
2289 1081 ctgtctatgg ggaatgaaca gaatctgtgc cttaaagatt tttatcaatt gaaatgtgag
2290 1141 tgttgagttg tggaatatgt atctatgtga aagtccctac ctacttaaaa tgatcaggaa
2291 1201 gatctgccac agaattgctt gtaggaaatc agtctaagtt gctgctagca agcttgggga
2292 1261 tggaggtaga attcttaccc agcagaagct gctggtttaa acattatgac aagtgtgttg
2293 1321 ttacatcaaa aaaattaaaa gttcttttag ttgttgttct cc
2294 //
2295
2296 LOCUS NM_001278100 1526 bp mRNA linear VRT 11-JAN-2017
2297 DEFINITION Gallus gallus adipogenesis associated, Mth938 domain containing
2298 (AAMDC), transcript variant 1, mRNA.
2299 ACCESSION NM_001278100 XM_003640599 XM_003640600 XM_424622
2300 VERSION NM_001278100.2
2301 KEYWORDS RefSeq.
2302 SOURCE Gallus gallus (chicken)
2303 ORGANISM Gallus gallus
2304 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2305 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2306 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2307 Phasianidae; Phasianinae; Gallus.
2308 REFERENCE 1 (bases 1 to 1526)
2309 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
2310 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
2311 TITLE A comprehensive collection of chicken cDNAs
2312 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
2313 PUBMED 12445392
2314 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2315 preliminary review. The reference sequence was derived from
2316 BX930541.1, BU315144.1 and AADN04000352.1.
2317 On Feb 11, 2016 this sequence version replaced gi:493796415.
2318
2319 Transcript Variant: This variant (1) represents the longest
2320 transcript. All three variants encode the same protein.
2321
2322 Sequence Note: This RefSeq record was created from transcript and
2323 genomic sequence data from different strains to make the sequence
2324 consistent with the reference genome assembly. The genomic
2325 coordinates used for the transcript record were based on transcript
2326 alignments.
2327
2328 ##Evidence-Data-START##
2329 Transcript exon combination :: BX930541.1, BU304087.1 [ECO:0000332]
2330 RNAseq introns :: single sample supports all introns
2331 SAMEA2201376 [ECO:0000348]
2332 ##Evidence-Data-END##
2333 COMPLETENESS: complete on the 3' end.
2334 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2335 1-267 BX930541.1 1-267
2336 268-877 BU315144.1 54-663
2337 878-1526 AADN04000352.1 548393-549041 c
2338 FEATURES Location/Qualifiers
2339 source 1..1526
2340 /organism="Gallus gallus"
2341 /mol_type="mRNA"
2342 /db_xref="taxon:9031"
2343 /chromosome="1"
2344 /map="1"
2345 /breed="Leghorn"
2346 gene 1..1526
2347 /gene="AAMDC"
2348 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2349 /note="adipogenesis associated, Mth938 domain containing"
2350 /db_xref="CGNC:52510"
2351 /db_xref="GeneID:425610"
2352 misc_feature 281..283
2353 /gene="AAMDC"
2354 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2355 /note="upstream in-frame stop codon"
2356 CDS 320..688
2357 /gene="AAMDC"
2358 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2359 /note="UPF0366 protein C11orf67; adipogenesis associated
2360 Mth938 domain-containing protein"
2361 /codon_start=1
2362 /product="mth938 domain-containing protein"
2363 /protein_id="NP_001265029.1"
2364 /db_xref="CGNC:52510"
2365 /db_xref="GeneID:425610"
2366 /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
2367 HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
2368 EYNALAAQGVKVGGVFHSTC"
2369 ORIGIN
2370 1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
2371 61 gggtcgcgcg gggcgctgag atggatgtca cgtcgtgctg ctgtctcttg tagtgtgtgc
2372 121 agcataggaa gacaatccaa agacttctct ttgctgaggg ctcttccttt aatgggtgcc
2373 181 accggggttc tgagagtctg gatgtcttga aggatctgct gctgagggtt tctggttcag
2374 241 aaggtcgtta ccttcgagac gcagctgctg gcagccacac tgatcaaaag catttccaag
2375 301 actttggttc aactcagtga tgtcttcccc tgaaattgct tccctgtctt ggggacagat
2376 361 gaaggtgaaa ggctgctcta caacatacaa ggactgcaaa gtatggccag gaggaagtcg
2377 421 gacctgggat tggagagaaa ctgggactaa tcattctcca ggagtgcagc cggctgacct
2378 481 tgaagaagtt gtcaagaagg gtgttaaaac tctcgtgatt ggccgtggca tgagtgaggc
2379 541 tctgcaggtt cctccatcta ccgtggacta tctcaagaaa aatgggattg atgtgttggt
2380 601 gttgcagaca gagaaggcag tggcagagta caatgccctg gctgctcagg gtgtcaaagt
2381 661 ggggggagtc ttccactcaa cgtgctgaag cactgctgct ttgcagcctg ccctgacctc
2382 721 agccaagtgc tgggcatgcc ttggctgcat caaattacac ccagcacagt ggggaggtgc
2383 781 gtgccaatgc attaatgtgc gctgcaaagc tgaaatgcaa gggcagttta tgagttcagg
2384 841 gtttaaacag agtgctgtta atgaaatctt ttaactgcag aacagtttgc atacgttctt
2385 901 gggattgacc taatcttcct ctgaagactg tctgcattct ggttactttt aggctaaatt
2386 961 aatgaactct ggttaatttt tggctaaatt aagactctta agttgtgaat gctttgatta
2387 1021 gaaaatggtg cggaattaca ttaatagtta ctgtattgta gccagaaaac atatgatgac
2388 1081 gacagtcaag tggtaggtat gaagtagtgg taaaggatca ctttattaat gagtttagaa
2389 1141 aaaagacaaa acacaaggca gcccctgagc aacagctctg cctcctgctg gtgaactcac
2390 1201 tcagtgcata acttgacact tctttacgcc agacatagaa aaagctgtct atggggaatg
2391 1261 aacagaatct gtgccttaaa gatttttatc aattgaaatg tgagtgttga gttgtggaat
2392 1321 atgtatctat gtgaaagtcc ctacctactt aaaatgatca ggaagatctg ccacagaatt
2393 1381 gcttgtagga aatcagtcta agttgctgct agcaagcttg gggatggagg tagaattctt
2394 1441 acccagcaga agctgctggt ttaaacatta tgacaagtgt gttgttacat caaaaaaatt
2395 1501 aaaagttctt ttagttgttg ttctcc
2396 //
2397
2398 LOCUS NM_001278104 1297 bp mRNA linear VRT 11-JAN-2017
2399 DEFINITION Gallus gallus adipogenesis associated, Mth938 domain containing
2400 (AAMDC), transcript variant 3, mRNA.
2401 ACCESSION NM_001278104
2402 VERSION NM_001278104.2
2403 KEYWORDS RefSeq.
2404 SOURCE Gallus gallus (chicken)
2405 ORGANISM Gallus gallus
2406 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2407 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2408 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2409 Phasianidae; Phasianinae; Gallus.
2410 REFERENCE 1 (bases 1 to 1297)
2411 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
2412 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
2413 TITLE A comprehensive collection of chicken cDNAs
2414 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
2415 PUBMED 12445392
2416 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2417 preliminary review. The reference sequence was derived from
2418 BX930541.1, BU296789.1 and AADN04000352.1.
2419 On Feb 11, 2016 this sequence version replaced gi:493797437.
2420
2421 Transcript Variant: This variant (3) lacks two alternate 5' UTR
2422 exons compared to variant 1. All three variants encode the same
2423 protein.
2424
2425 Sequence Note: This RefSeq record was created from transcript and
2426 genomic sequence data from different strains to make the sequence
2427 consistent with the reference genome assembly. The genomic
2428 coordinates used for the transcript record were based on transcript
2429 alignments.
2430
2431 ##Evidence-Data-START##
2432 Transcript exon combination :: BX930513.1, BU296789.1 [ECO:0000332]
2433 RNAseq introns :: single sample supports all introns
2434 SAMEA2201358, SAMEA2201376
2435 [ECO:0000348]
2436 ##Evidence-Data-END##
2437 COMPLETENESS: complete on the 3' end.
2438 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2439 1-28 BX930541.1 1-28
2440 29-694 BU296789.1 1-666
2441 695-1297 AADN04000352.1 548393-548995 c
2442 FEATURES Location/Qualifiers
2443 source 1..1297
2444 /organism="Gallus gallus"
2445 /mol_type="mRNA"
2446 /db_xref="taxon:9031"
2447 /chromosome="1"
2448 /map="1"
2449 /breed="Leghorn"
2450 gene 1..1297
2451 /gene="AAMDC"
2452 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2453 /note="adipogenesis associated, Mth938 domain containing"
2454 /db_xref="CGNC:52510"
2455 /db_xref="GeneID:425610"
2456 CDS 91..459
2457 /gene="AAMDC"
2458 /gene_synonym="C11orf6; C1H11ORF67; CK067; PTD015"
2459 /note="UPF0366 protein C11orf67; adipogenesis associated
2460 Mth938 domain-containing protein"
2461 /codon_start=1
2462 /product="mth938 domain-containing protein"
2463 /protein_id="NP_001265033.1"
2464 /db_xref="CGNC:52510"
2465 /db_xref="GeneID:425610"
2466 /translation="MSSPEIASLSWGQMKVKGCSTTYKDCKVWPGGSRTWDWRETGTN
2467 HSPGVQPADLEEVVKKGVKTLVIGRGMSEALQVPPSTVDYLKKNGIDVLVLQTEKAVA
2468 EYNALAAQGVKVGGVFHSTC"
2469 ORIGIN
2470 1 gaagggcggg gcttcgcgct tcccacccgt gtgaggccgt ggtggcggtt gttggggttg
2471 61 gggtcgcgcg gactttggtt caactcagtg atgtcttccc ctgaaattgc ttccctgtct
2472 121 tggggacaga tgaaggtgaa aggctgctct acaacataca aggactgcaa agtatggcca
2473 181 ggaggaagtc ggacctggga ttggagagaa actgggacta atcattctcc aggagtgcag
2474 241 ccggctgacc ttgaagaagt tgtcaagaag ggtgttaaaa ctctcgtgat tggccgtggc
2475 301 atgagtgagg ctctgcaggt tcctccatct accgtggact atctcaagaa aaatgggatt
2476 361 gatgtgttgg tgttgcagac agagaaggca gtggcagagt acaatgccct ggctgctcag
2477 421 ggtgtcaaag tggggggagt cttccactca acgtgctgaa gcactgctgc tttgcagcct
2478 481 gccctgacct cagccaagtg ctgggcatgc cttggctgca tcaaattaca cccagcacag
2479 541 tggggaggtg cgtgccaatg cattaatgtg cgctgcaaag ctgaaatgca agggcagttt
2480 601 atgagttcag ggtttaaaca gagtgctgtt aatgaaatct tttaactgca gaacagtttg
2481 661 catacgttct tgggattgac ctaatcttcc tctgaagact gtctgcattc tggttacttt
2482 721 taggctaaat taatgaactc tggttaattt ttggctaaat taagactctt aagttgtgaa
2483 781 tgctttgatt agaaaatggt gcggaattac attaatagtt actgtattgt agccagaaaa
2484 841 catatgatga cgacagtcaa gtggtaggta tgaagtagtg gtaaaggatc actttattaa
2485 901 tgagtttaga aaaaagacaa aacacaaggc agcccctgag caacagctct gcctcctgct
2486 961 ggtgaactca ctcagtgcat aacttgacac ttctttacgc cagacataga aaaagctgtc
2487 1021 tatggggaat gaacagaatc tgtgccttaa agatttttat caattgaaat gtgagtgttg
2488 1081 agttgtggaa tatgtatcta tgtgaaagtc cctacctact taaaatgatc aggaagatct
2489 1141 gccacagaat tgcttgtagg aaatcagtct aagttgctgc tagcaagctt ggggatggag
2490 1201 gtagaattct tacccagcag aagctgctgg tttaaacatt atgacaagtg tgttgttaca
2491 1261 tcaaaaaaat taaaagttct tttagttgtt gttctcc
2492 //
2493
2494 LOCUS NM_001006176 3248 bp mRNA linear VRT 11-JAN-2017
2495 DEFINITION Gallus gallus coronin 7 (CORO7), mRNA.
2496 ACCESSION NM_001006176 XM_414966
2497 VERSION NM_001006176.2
2498 KEYWORDS RefSeq.
2499 SOURCE Gallus gallus (chicken)
2500 ORGANISM Gallus gallus
2501 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2502 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2503 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2504 Phasianidae; Phasianinae; Gallus.
2505 REFERENCE 1 (bases 1 to 3248)
2506 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
2507 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
2508 P, Hayashizaki Y and Buerstedde JM.
2509 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
2510 gene function analysis
2511 JOURNAL Genome Biol. 6 (1), R6 (2005)
2512 PUBMED 15642098
2513 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2514 preliminary review. The reference sequence was derived from
2515 BM426249.1 and AJ719722.1.
2516 On Mar 21, 2015 this sequence version replaced gi:57525130.
2517
2518 ##Evidence-Data-START##
2519 Transcript exon combination :: AJ719722.1 [ECO:0000332]
2520 RNAseq introns :: mixed/partial sample support
2521 SAMEA2201357, SAMEA2201358
2522 [ECO:0000350]
2523 ##Evidence-Data-END##
2524 COMPLETENESS: complete on the 3' end.
2525 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2526 1-312 BM426249.1 1-312
2527 313-3248 AJ719722.1 10-2945
2528 FEATURES Location/Qualifiers
2529 source 1..3248
2530 /organism="Gallus gallus"
2531 /mol_type="mRNA"
2532 /db_xref="taxon:9031"
2533 /chromosome="14"
2534 /map="14"
2535 /breed="Commercial broiler, Ottawa Research Centre,
2536 leghorn"
2537 gene 1..3248
2538 /gene="CORO7"
2539 /gene_synonym="CORO7-PAM16; coronin-7"
2540 /note="coronin 7"
2541 /db_xref="CGNC:50317"
2542 /db_xref="GeneID:416670"
2543 misc_feature 308..310
2544 /gene="CORO7"
2545 /gene_synonym="CORO7-PAM16; coronin-7"
2546 /note="upstream in-frame stop codon"
2547 CDS 347..3118
2548 /gene="CORO7"
2549 /gene_synonym="CORO7-PAM16; coronin-7"
2550 /note="CORO7-PAM16 readthrough"
2551 /codon_start=1
2552 /product="coronin-7"
2553 /protein_id="NP_001006176.1"
2554 /db_xref="CGNC:50317"
2555 /db_xref="GeneID:416670"
2556 /translation="MNRFKASKFRHTEARLPRREAWIGGLRASSVASYGNHVEASCRW
2557 VASSAEATGVLGIVPLEGRDGGKRTVSQLCCHSDAVTDFDFSPFDPFLLATGSADEMV
2558 KVWRLPEEGQELPSSAGLMLGPGGGTVDMLQFHPTADGILTSGVGKRVTVWDVGQQQP
2559 LTALEAHGDQLQSLSWKHDGRLLGTSCKDKKLRILDPRASPAASQSVPGHENNKDSRL
2560 LWMGASDCLISVGFSQMREREVKLWDTRKFSGATFTLALDTSSGAVIPLYDADTGLLV
2561 LAGKGENLLYCLEAAPAQPALTQVTQCLMEGPTRGLATVPRLALDVMACEVLRVLQLT
2562 DTFLVPVSYIVPRKSNQEFHEDLFPDCAGMLPATDAQAWWAGDSQQVGRVSLHPARRP
2563 TETFCSPLITAAPSTQLPDDGPVDSDRSEGSGYSSPSGSLTSPSSAGASLSTSTGPSS
2564 GFVSSPSQKSLQSILGPSSRFRHTQGTVLHRDSHITNLRGLSLTTPGESDGFCANHQR
2565 VALPLLSAGGQIAVLELSKPGRLPDVAVPTIQNGAAVSDLSWDPFDPQRLAVAGEDAK
2566 IRLWRVPEGGLQDTLQEPEAVLRGHTEKIYSIRFHPVAADLLVSSSYDMTVRIWDLGA
2567 GREVLCLQGHTDQIFSLAWSPDGRKLATVSKDGRLRLFEPRCSLQPQQEGPGPEGGRG
2568 ARVVWVCGGDFLLVSGFDSRSERRILLYRAQALSDGPLYVLGLDVAPSTLLPFYDEDT
2569 SVVFLTGKGDTRVFLYEVTPEPPYFLECNSFTSSDPHKGFVFLRKTACDVREVEFARA
2570 LRLGQSSLEPVAFRVPRVKKEYFQEDIFPPTRVWWEPALSASAWLGGADGQQNRAELR
2571 PADMVPVSQAPKEAPARKFVPAAVYLGEKTDEQKKEELLSAMVARLGNRHDPLPQDSF
2572 EGVDEAEWD"
2573 ORIGIN
2574 1 gatccgggct gctccgcccg cgcggcgacg gcgacgggga cggcccgtgg gcgacacggc
2575 61 ggggcgcggg gctcttcgcc cgcttccctg acagctgcgg ttgtgctcgc tgccgggggc
2576 121 ggaccggcag cctcctgacg tcccgccgtg ttgtgcgtgg agcagctgct gccaggcgcc
2577 181 gagggcggcc ggctcagcga gggcggacag ctgccggcct gcagagcccc caacccgcgc
2578 241 ggcgcagagc ggcccggccg cgccctgccc tgccctggcc gtgccgcggg gcggggcggg
2579 301 gcggggctga gggcggcgcg gcgcggcgcg gcggtcccgg cgcaccatga accgcttcaa
2580 361 ggcgtccaag ttccggcaca ccgaggcccg gctgccccgc agggaggcct ggattggggg
2581 421 tctccgagcc agctctgttg catcctatgg gaaccatgtg gaggccagct gccgctgggt
2582 481 cgcctccagt gctgaggcaa caggagtgct gggcatcgtg ccactggagg gcagggacgg
2583 541 aggcaagagg accgtgtctc agctctgctg ccactcagat gcagtgacag actttgactt
2584 601 ctcacccttt gacccattcc tgctggccac aggctccgct gatgaaatgg tgaaggtttg
2585 661 gcgcctgcct gaggaaggcc aggagctgcc cagcagtgca gggctgatgt tgggtcctgg
2586 721 tgggggcaca gtggacatgc tgcagtttca cccaacggca gatggcatcc tgaccagtgg
2587 781 tgtgggaaag cgggtcactg tgtgggatgt ggggcagcag cagccgctga cagcactgga
2588 841 ggcccatggg gaccagctgc agagcctatc ctggaagcat gatggccgcc tgcttggcac
2589 901 ctcctgcaag gacaagaaac tgcggatcct tgaccctcga gccagcccag ctgcatccca
2590 961 gagtgtccca ggacatgaga acaacaagga ctcccggctg ctctggatgg gagccagcga
2591 1021 ttgcctcatc tccgtggggt tcagccagat gcgtgagcgg gaggtgaagc tctgggacac
2592 1081 gcggaaattc agtggcgcga ctttcacctt ggcactggac acctcatctg gggccgtgat
2593 1141 cccactgtat gacgccgaca cggggctgct ggtgctggcg gggaagggag aaaacctcct
2594 1201 gtactgcttg gaggcggcac cggctcagcc tgcactcacc caagtcactc agtgcctgat
2595 1261 ggagggaccc acacggggcc tggccaccgt cccccgcctg gccctggacg tcatggcctg
2596 1321 cgaggtgctc cgcgtcctgc agctcaccga caccttcctc gtccctgtca gctacatcgt
2597 1381 gccccgcaag tccaaccagg agttccacga ggatctgttc cctgactgcg ctgggatgct
2598 1441 gccggccaca gatgcccagg cctggtgggc aggggacagc cagcaggtgg ggagggtgag
2599 1501 cctgcacccg gcacggagac ccacagagac cttctgttcc ccactcatca ccgccgcacc
2600 1561 cagcacccag ctgcctgatg acggccccgt ggattccgac cgcagtgaag gcagtggcta
2601 1621 ctcttcaccc tctggctcgc tgacctcacc gagcagcgct ggcgcctcac tctccaccag
2602 1681 cactggcccc tccagtggct tcgtcagcag ccccagccag aagtcactgc agagtatttt
2603 1741 ggggcccagc tcccgcttcc ggcacacaca gggcacagtg ctgcaccgtg acagccacat
2604 1801 aaccaacctg cgggggctga gcctcaccac gccgggcgag agcgacggct tctgtgccaa
2605 1861 ccaccagcgt gttgccctcc cactgctctc tgccggtggc cagatcgctg tccttgagct
2606 1921 ctccaaacca ggccgtctcc ccgacgtggc tgtgcccacc atccagaatg gtgcagcggt
2607 1981 gtccgacctc tcctgggacc ccttcgaccc acagcgcctt gcggttgcgg gggaggatgc
2608 2041 caagatccgg ctgtggcggg tgcctgaggg ggggctgcag gacacgctgc aggagcctga
2609 2101 ggccgtgctg agagggcaca cggagaagat ctactccatc cgcttccacc ccgtggcagc
2610 2161 cgacctcctt gtctcctctt cctatgacat gacagtgcgg atttgggatc tgggtgctgg
2611 2221 gcgggaggtg ctgtgcctac agggacacac ggaccagatc ttcagcctgg cctggagccc
2612 2281 agacgggagg aagctggcga cggtgagcaa ggatggccgg ttgcggctct ttgagcctcg
2613 2341 gtgcagcctt caaccccagc aggagggtcc gggccctgag ggaggccgtg gggcacgcgt
2614 2401 ggtctgggtg tgcggaggtg acttcctcct cgtgtccggc ttcgacagcc gcagcgagag
2615 2461 gaggatcctt ctgtaccgtg cacaggccct gtccgatggg cccctctacg ttctcggcct
2616 2521 cgatgtggcc ccttccacac tcctgccctt ctatgatgag gacaccagtg ttgtcttcct
2617 2581 cactggcaag ggtgacacca gagtcttcct ctacgaggtg acccccgagc caccctattt
2618 2641 cctcgaatgc aacagcttca cctccagcga cccccacaag ggctttgtct tcctgcgcaa
2619 2701 gacagcgtgc gacgtgcggg aggtggagtt cgcccgggcg ctgcggctgg ggcagagcag
2620 2761 cctcgagccg gtggctttcc gtgtgccgcg tgtcaagaaa gagtatttcc aagaagacat
2621 2821 cttccctccc acccgcgtgt ggtgggagcc ggccctgagc gccagcgcct ggctgggggg
2622 2881 ggcggacggg cagcagaacc gcgctgagct ccgtcccgcc gacatggtgc cagtgagcca
2623 2941 ggccccaaag gaggcacctg cgcggaagtt cgtccctgcg gccgtgtatc tgggggagaa
2624 3001 gacagacgag cagaagaagg aggagctcct cagcgccatg gtggcccggc tggggaaccg
2625 3061 ccacgacccg ctgccgcagg actccttcga aggcgtggat gaggccgagt gggactaggc
2626 3121 cgcgggcgga ccccacggcg ctgcgcggac cccaggcctc gccggagagg agccgtctcg
2627 3181 aacccggccc gcgccagggg ccaggccccg ccattaaagc cgctgcagcc ccaaaaaaaa
2628 3241 aaaaaaaa
2629 //
2630
2631 LOCUS NM_001281486 572 bp mRNA linear VRT 11-JAN-2017
2632 DEFINITION Gallus gallus small integral membrane protein 7 (SMIM7), mRNA.
2633 ACCESSION NM_001281486 XM_418258
2634 VERSION NM_001281486.1
2635 KEYWORDS RefSeq.
2636 SOURCE Gallus gallus (chicken)
2637 ORGANISM Gallus gallus
2638 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2639 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2640 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2641 Phasianidae; Phasianinae; Gallus.
2642 REFERENCE 1 (bases 1 to 572)
2643 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
2644 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
2645 TITLE A comprehensive collection of chicken cDNAs
2646 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
2647 PUBMED 12445392
2648 REFERENCE 2 (bases 1 to 572)
2649 AUTHORS Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
2650 Korn B and Buerstedde JM.
2651 TITLE A large database of chicken bursal ESTs as a resource for the
2652 analysis of vertebrate gene function
2653 JOURNAL Genome Res. 10 (12), 2062-2069 (2000)
2654 PUBMED 11116100
2655 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2656 preliminary review. The reference sequence was derived from
2657 BU332068.1, CR389276.1, CR352906.1, AJ392482.1 and BU317186.1.
2658 On Jul 31, 2013 this sequence version replaced gi:513227766.
2659
2660 ##Evidence-Data-START##
2661 Transcript exon combination :: BU332068.1, AM065877.1 [ECO:0000332]
2662 RNAseq introns :: single sample supports all introns
2663 SAMEA2201357, SAMEA2201358
2664 [ECO:0000348]
2665 ##Evidence-Data-END##
2666 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2667 1-27 BU332068.1 1-27
2668 28-361 CR389276.1 1-334
2669 362-413 CR352906.1 450-501
2670 414-436 AJ392482.1 197-219
2671 437-479 CR389276.1 410-452
2672 480-536 AJ392482.1 263-319
2673 537-572 BU317186.1 508-543
2674 FEATURES Location/Qualifiers
2675 source 1..572
2676 /organism="Gallus gallus"
2677 /mol_type="mRNA"
2678 /db_xref="taxon:9031"
2679 /chromosome="28"
2680 /map="28"
2681 /breed="Leghorn"
2682 gene 1..572
2683 /gene="SMIM7"
2684 /gene_synonym="C19orf42; C28H19ORF42"
2685 /note="small integral membrane protein 7"
2686 /db_xref="CGNC:51190"
2687 /db_xref="GeneID:420141"
2688 CDS 21..248
2689 /gene="SMIM7"
2690 /gene_synonym="C19orf42; C28H19ORF42"
2691 /note="UPF0608 protein C19orf42"
2692 /codon_start=1
2693 /product="small integral membrane protein 7"
2694 /protein_id="NP_001268415.1"
2695 /db_xref="CGNC:51190"
2696 /db_xref="GeneID:420141"
2697 /translation="MLGDLLLCGTLLVNAGAVLNFRLRRRDTEGFGEGAREPTTGDNI
2698 REFLLSLRYFRIFIALWNVFMMFCMIVLFGS"
2699 ORIGIN
2700 1 ccggcgccgg gaccgccgcc atgctggggg atctgctgct ctgcggaacg ctgctggtga
2701 61 acgccggcgc tgtgctgaac ttcagactga ggaggagaga cacggagggc ttcggcgagg
2702 121 gggcgaggga gcccaccacc ggtgacaata tcagagagtt cttgctgagc cttaggtatt
2703 181 tccgaatctt cattgccttg tggaatgtct tcatgatgtt ctgcatgatt gtgttatttg
2704 241 gatcttgaaa gtcatccaca aacatggctg gtaacttgga agagactttt ggctgcaaac
2705 301 ataacttttc tatcaagtaa aagattataa tgctttccaa acacagccct gggattgtga
2706 361 cagttcttca gcacgagctc cgaggggcag cacagcacac agccccccca gccagctgtg
2707 421 taaggctgtg ggtgtgtggg gctgcgtgct gcagggcagg gagccttcca gcccctgagc
2708 481 caaaggcctc aaagtaaaat taattcaact tcaccgggag gaaaaaaaca acccacccac
2709 541 ctttacagtg ggttgctcag cattctgtgc cc
2710 //
2711
2712 LOCUS NM_001278545 940 bp mRNA linear VRT 09-JAN-2017
2713 DEFINITION Gallus gallus immunoglobulin lambda-like polypeptide 1 (IGLL1),
2714 mRNA.
2715 ACCESSION NM_001278545
2716 VERSION NM_001278545.1
2717 KEYWORDS RefSeq.
2718 SOURCE Gallus gallus (chicken)
2719 ORGANISM Gallus gallus
2720 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2721 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2722 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2723 Phasianidae; Phasianinae; Gallus.
2724 REFERENCE 1 (bases 1 to 940)
2725 AUTHORS Luo J, Zhang H, Teng M, Fan JM, You LM, Xiao ZJ, Yi ML, Zhi YB, Li
2726 XW and Zhang GP.
2727 TITLE Surface IgM on DT40 cells may be a component of the putative
2728 receptor complex responsible for the binding of infectious bursal
2729 disease virus
2730 JOURNAL Avian Pathol. 39 (5), 359-365 (2010)
2731 PUBMED 20954012
2732 REFERENCE 2 (bases 1 to 940)
2733 AUTHORS Yamanaka HI, Inoue T and Ikeda-Tanaka O.
2734 TITLE Chicken monoclonal antibody isolated by a phage display system
2735 JOURNAL J. Immunol. 157 (3), 1156-1162 (1996)
2736 PUBMED 8757621
2737 REFERENCE 3 (bases 1 to 940)
2738 AUTHORS Mansikka A, Sandberg M, Lassila O and Toivanen P.
2739 TITLE Rearrangement of immunoglobulin light chain genes in the chicken
2740 occurs prior to colonization of the embryonic bursa of Fabricius
2741 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 87 (23), 9416-9420 (1990)
2742 PUBMED 2123557
2743 REFERENCE 4 (bases 1 to 940)
2744 AUTHORS Parvari,R., Ziv,E., Lantner,F., Tel-Or,S., Burstein,Y. and
2745 Schechter,I.
2746 TITLE A few germline genes encode the variable regions of chicken
2747 immunoglobulin light and gamma-heavy chains
2748 JOURNAL Prog. Clin. Biol. Res. 238, 15-26 (1987)
2749 PUBMED 3110791
2750 REFERENCE 5 (bases 1 to 940)
2751 AUTHORS Reynaud,C.A., Anquez,V., Dahan,A. and Weill,J.C.
2752 TITLE A single rearrangement event generates most of the chicken
2753 immunoglobulin light chain diversity
2754 JOURNAL Cell 40 (2), 283-291 (1985)
2755 PUBMED 3917859
2756 REFERENCE 6 (bases 1 to 940)
2757 AUTHORS Reynaud,C.A., Dahan,A. and Weill,J.C.
2758 TITLE Complete sequence of a chicken lambda light chain immunoglobulin
2759 derived from the nucleotide sequence of its mRNA
2760 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 80 (13), 4099-4103 (1983)
2761 PUBMED 6408641
2762 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
2763 NCBI review. The reference sequence was derived from AC171016.2.
2764
2765 Sequence Note: The RefSeq transcript and protein were derived from
2766 genomic sequence to make the sequence consistent with the reference
2767 genome assembly. The genomic coordinates used for the transcript
2768 record were based on alignments.
2769
2770 ##Evidence-Data-START##
2771 RNAseq introns :: single sample supports all introns SAMN03376185,
2772 SAMN03376188 [ECO:0000348]
2773 ##Evidence-Data-END##
2774 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2775 1-87 AC171016.2 125417-125503 c
2776 88-372 AC171016.2 125007-125291 c
2777 373-414 AC171016.2 123150-123191 c
2778 415-940 AC171016.2 120886-121411 c
2779 FEATURES Location/Qualifiers
2780 source 1..940
2781 /organism="Gallus gallus"
2782 /mol_type="mRNA"
2783 /db_xref="taxon:9031"
2784 /chromosome="15"
2785 /map="15"
2786 /breed="Red Jungle Fowl"
2787 gene 1..940
2788 /gene="IGLL1"
2789 /gene_synonym="IgL; IGLV"
2790 /note="immunoglobulin lambda-like polypeptide 1"
2791 /db_xref="CGNC:14448"
2792 /db_xref="GeneID:416928"
2793 CDS 42..728
2794 /gene="IGLL1"
2795 /gene_synonym="IgL; IGLV"
2796 /note="Ig light chain variable region; Ig lambda chain V-1
2797 region; immunoglobulin light-chain VJ region;
2798 immunoglobulin lambda light chain; immunoglobulin
2799 light-chain C-lambda region; immunoglobulin lambda chain;
2800 Ig VL1; immunoglobulin light chain; sIgM light chain;
2801 immunoglobulin Y light chain; Ig lambda chain C region;
2802 immunoglobulin light chain variable region"
2803 /codon_start=1
2804 /product="Ig lambda chain V-1 region precursor"
2805 /protein_id="NP_001265474.1"
2806 /db_xref="CGNC:14448"
2807 /db_xref="GeneID:416928"
2808 /translation="MAWAPLLLAVLAHTSGSLVQAALTQPSSVSANPGETVKITCSGD
2809 RSYYGWYQQKAPGSAPVTLIYDNTNRPSNIPSRFSGSKSGSTATLTITGVQADDEAVY
2810 YCGSADSSMCGIFGAGTTLTVLGQPKVAPTITLFPPSKEELNEATKATLVCLINDFYP
2811 SPVTVDWVIDGSTRSGETTAPQRQSNSQYMASSYLSLSASDWSSHETYTCRVTHNGTS
2812 ITKTLKRSEC"
2813 sig_peptide 42..104
2814 /gene="IGLL1"
2815 /gene_synonym="IgL; IGLV"
2816 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
2817 misc_feature 105..164
2818 /gene="IGLL1"
2819 /gene_synonym="IgL; IGLV"
2820 /experiment="experimental evidence, no additional details
2821 recorded"
2822 /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
2823 Region: Framework-1"
2824 misc_feature 165..188
2825 /gene="IGLL1"
2826 /gene_synonym="IgL; IGLV"
2827 /experiment="experimental evidence, no additional details
2828 recorded"
2829 /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
2830 Region: Complementarity-determining-1"
2831 misc_feature 189..236
2832 /gene="IGLL1"
2833 /gene_synonym="IgL; IGLV"
2834 /experiment="experimental evidence, no additional details
2835 recorded"
2836 /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
2837 Region: Framework-2"
2838 misc_feature 237..257
2839 /gene="IGLL1"
2840 /gene_synonym="IgL; IGLV"
2841 /experiment="experimental evidence, no additional details
2842 recorded"
2843 /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
2844 Region: Complementarity-determining-2"
2845 misc_feature 258..353
2846 /gene="IGLL1"
2847 /gene_synonym="IgL; IGLV"
2848 /experiment="experimental evidence, no additional details
2849 recorded"
2850 /note="propagated from UniProtKB/Swiss-Prot (P04210.1);
2851 Region: Framework-3"
2852 ORIGIN
2853 1 gccccatcgg cgtggggaca cacagctgct gggattccgc catggcctgg gctcctctcc
2854 61 tcctggcggt gctcgcccac acctcaggtt ccctggtgca ggcagcgctg actcagccgt
2855 121 cctcggtgtc agcgaacccg ggagaaaccg tcaagatcac ctgctccggg gataggagct
2856 181 actatggctg gtaccagcag aaggcacctg gcagtgcccc tgtcactctg atctatgaca
2857 241 acaccaacag accctcgaac atcccttcac gattctccgg ttccaaatcc ggctccacag
2858 301 ccacattaac catcactggg gtccaagccg acgacgaggc tgtctattac tgtgggagtg
2859 361 cagacagcag catgtgtggt atatttgggg ccgggacaac cctgaccgtc ctaggccagc
2860 421 ccaaggtggc ccccaccatc accctcttcc caccgtcaaa ggaggagctg aacgaagcca
2861 481 ccaaggccac cctggtgtgc ctgataaacg acttctaccc cagcccagtg actgtggatt
2862 541 gggtgatcga tggctccacc cgctctggcg agaccacagc accacagcgg cagagcaaca
2863 601 gccagtatat ggccagcagc tacctgtcac tgtctgccag cgactggtca agccacgaga
2864 661 cctacacctg cagggtcaca cacaacggca cctctatcac gaagaccctg aagaggtccg
2865 721 agtgctaata gtcccactgg ggatgcaatg tgaggacagt ggttcctcac cctccctgtc
2866 781 cctctgggcc gctgctggtg gcagcagccc tcacttccca ctcagatgtc ccccaccgtg
2867 841 cccccatcac ccacctctgc ctgtcgactc ctcttgccct catctctcca ggtgtcacat
2868 901 taataaacac gacactgaac tagtgctgac tctgcatcca
2869 //
2870
2871 LOCUS NM_001277657 1691 bp mRNA linear VRT 11-JAN-2017
2872 DEFINITION Gallus gallus calcium channel flower domain containing 1 (CACFD1),
2873 mRNA.
2874 ACCESSION NM_001277657 XM_415434
2875 VERSION NM_001277657.1
2876 KEYWORDS RefSeq.
2877 SOURCE Gallus gallus (chicken)
2878 ORGANISM Gallus gallus
2879 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2880 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2881 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2882 Phasianidae; Phasianinae; Gallus.
2883 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
2884 NCBI review. The reference sequence was derived from CR385838.1.
2885 On Apr 13, 2013 this sequence version replaced gi:363740460.
2886
2887 ##Evidence-Data-START##
2888 Transcript exon combination :: CR385838.1, BU455956.1 [ECO:0000332]
2889 RNAseq introns :: single sample supports all introns
2890 SAMEA2201357, SAMEA2201358
2891 [ECO:0000348]
2892 ##Evidence-Data-END##
2893 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2894 1-1691 CR385838.1 2-1692
2895 FEATURES Location/Qualifiers
2896 source 1..1691
2897 /organism="Gallus gallus"
2898 /mol_type="mRNA"
2899 /db_xref="taxon:9031"
2900 /chromosome="17"
2901 /map="17"
2902 gene 1..1691
2903 /gene="CACFD1"
2904 /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
2905 /note="calcium channel flower domain containing 1"
2906 /db_xref="CGNC:50452"
2907 /db_xref="GeneID:417151"
2908 misc_feature 226..228
2909 /gene="CACFD1"
2910 /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
2911 /note="upstream in-frame stop codon"
2912 CDS 250..774
2913 /gene="CACFD1"
2914 /gene_synonym="C17H9ORF7; C9orf7; D9S2135; FLOWER"
2915 /note="calcium channel flower domain-containing protein 1"
2916 /codon_start=1
2917 /product="calcium channel flower homolog"
2918 /protein_id="NP_001264586.1"
2919 /db_xref="CGNC:50452"
2920 /db_xref="GeneID:417151"
2921 /translation="MSSQDEQFQAAAPESASSSADDGMTWWYRWLCRIAGVIGGVSCA
2922 VAGLWNCVTINPLNIAAGVWMMLNAFVLFLCEAPFCCQFIEFANAVSARADKLRAWQK
2923 AAFYCGMAVFPVMLSLTLTTLFGNAIAFATGVLYGLSALGKKGDAISYARIHQQQKQM
2924 DEEKLTGCLEGQAL"
2925 ORIGIN
2926 1 gacgtggagg ctgctcccac ggccgctggc atcgctgctg cggtcagaaa ccctctattg
2927 61 tcagccctgg ggggcccggc cccgtatggg ggtgcgagga gaggcccagc agcagcaggg
2928 121 ccgggttagg ggccgtctcc tggtcctgct ggaggagggg ggagtgtcac ctggaggggc
2929 181 atccagcgct gctggggctc aggtggggag cggggagctg ccctttgacc ccccagcagc
2930 241 agcggggcca tgagctctca ggatgagcag ttccaagcag cagcccccga gtcagcatct
2931 301 tcctccgccg atgatggcat gacctggtgg tacaggtggc tctgcaggat tgccggggtc
2932 361 atcgggggcg tgtcttgcgc tgttgctggt ctctggaact gtgttaccat caacccactg
2933 421 aacatagcag ccggagtgtg gatgatgctc aacgccttcg tcctgttcct gtgcgaggct
2934 481 ccgttctgct gccagttcat cgagttcgcc aacgccgtgt ctgcgagggc agacaagctg
2935 541 cgggcctggc agaaagctgc tttctactgc gggatggctg tgttccctgt catgctcagc
2936 601 ctgacgctca ccactctctt tggaaatgcc attgcgtttg cgaccggggt gctgtatggc
2937 661 ctgtcagctc ttggcaagaa gggagatgcc atttcctacg ctcggatcca ccagcagcag
2938 721 aagcaaatgg atgaagagaa gctcacgggg tgcctggagg gacaggctct gtgaagtgcg
2939 781 tgagcccagg gtgacctttt ggaccctgag atggtggtga agatttggaa acccactctg
2940 841 ccctcccctc tgctcaaccc ctctccatca ctccacgatt tccctggaca ctacagcaac
2941 901 aactggagct ctcagggccg gggtgggctg tgcccccctc acacaccagc agttggacct
2942 961 cagtgctttg gctgctccct cctcctgccc actcagaacc aaatatctca tggtccttct
2943 1021 ttttctttct ttcttccttt cttttttttc ttcttttttt atggcagggg tgctggccct
2944 1081 ttgagtgctg ctgtataagc ctaaacacat agcctttctc tggttttgat gcccatcaca
2945 1141 ttttgctggg aactgtgtgt gggcagcaca ctctttgagg actgctccgg aggtctcatg
2946 1201 cccagggtgc tgctgcacgt tacacattta gtgcagcaca ctctggtgtg gctcattcca
2947 1261 ggcataaaac acggatgcag tgttgagcag tacctgctga cgcttgcatt tggtgttcat
2948 1321 catcatccag gttttaatat aggtccaatt aggtcggaca ttggaggcat ctctgcacag
2949 1381 taaaggactt ccagcaaaaa aaacaaccat gcatgaagac agtgatgcct ccagaggaga
2950 1441 gaagcacagt ctgcccttcc tctggataca gcttcaggca gataatgcaa tttacttgaa
2951 1501 ttatgaccat taattacgta gtcttaataa gggtactttt cttcagcttc attcttttac
2952 1561 tggggaagaa gggaagcgag gctgaaaaag ggtggtgttg cttgaggcaa acagaggcag
2953 1621 tttgcaggtg ggatggttgc tgatgtgcaa gtgagtcccc tctgagccca gacagacact
2954 1681 gctctgttct c
2955 //
2956
2957 LOCUS NM_001277490 1452 bp mRNA linear VRT 11-JAN-2017
2958 DEFINITION Gallus gallus elongator acetyltransferase complex subunit 6 (ELP6),
2959 mRNA.
2960 ACCESSION NM_001277490 XM_418484
2961 VERSION NM_001277490.1
2962 KEYWORDS RefSeq.
2963 SOURCE Gallus gallus (chicken)
2964 ORGANISM Gallus gallus
2965 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
2966 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
2967 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
2968 Phasianidae; Phasianinae; Gallus.
2969 REFERENCE 1 (bases 1 to 1452)
2970 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
2971 Burnside J, Aggrey SE, Simon J and Cogburn LA.
2972 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
2973 from single and multiple tissue cDNA libraries and CAP3 assembly of
2974 a chicken gene index
2975 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
2976 PUBMED 16554550
2977 COMMENT VALIDATED REFSEQ: This record has undergone validation or
2978 preliminary review. The reference sequence was derived from
2979 CD219096.1, BX932848.1, DR424316.1 and AADN04000184.1.
2980 On Apr 11, 2013 this sequence version replaced gi:363729718.
2981
2982 Sequence Note: This RefSeq record was created from transcript and
2983 genomic sequence data from different strains because no single
2984 transcript from the same strain was available for the full length
2985 of the gene. The extent of this transcript is supported by
2986 transcript alignments and orthologous data.
2987
2988 ##Evidence-Data-START##
2989 Transcript exon combination :: BX932848.1, BU465771.1 [ECO:0000332]
2990 RNAseq introns :: single sample supports all introns
2991 SAMEA2201357, SAMEA2201358
2992 [ECO:0000348]
2993 ##Evidence-Data-END##
2994 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
2995 1-30 CD219096.1 4-33
2996 31-388 BX932848.1 2-359
2997 389-775 DR424316.1 337-723
2998 776-1441 BX932848.1 747-1412
2999 1442-1452 AADN04000184.1 3723704-3723714 c
3000 FEATURES Location/Qualifiers
3001 source 1..1452
3002 /organism="Gallus gallus"
3003 /mol_type="mRNA"
3004 /db_xref="taxon:9031"
3005 /chromosome="2"
3006 /map="2"
3007 /breed="Leghorn"
3008 gene 1..1452
3009 /gene="ELP6"
3010 /gene_synonym="C2H3ORF75; C3orf75; TMEM103"
3011 /note="elongator acetyltransferase complex subunit 6"
3012 /db_xref="CGNC:3759"
3013 /db_xref="GeneID:420379"
3014 CDS 21..818
3015 /gene="ELP6"
3016 /gene_synonym="C2H3ORF75; C3orf75; TMEM103"
3017 /note="transmembrane protein 103; UPF0405 protein C3orf75;
3018 angiotonin-transactivated protein 1; elongator complex
3019 protein 6 homolog"
3020 /codon_start=1
3021 /product="elongator complex protein 6"
3022 /protein_id="NP_001264419.1"
3023 /db_xref="CGNC:3759"
3024 /db_xref="GeneID:420379"
3025 /translation="MLEELNELLDATPQRPDTGKFTLLRDSRTDGSFLVHHFLSFYLR
3026 AGCKVCFLALVQSFSHYNIVAQKLGVSLTAAKERGQLVFLEGLKSCLDLVFGEEEPSG
3027 QPSPLQFISGSVSNLKDLFDFVRTSLAPTDSDSWKGRVLLVDDLSVLLSLGAAPVDVL
3028 DFIHYCRMVVCSQLKGNIVVLVHGSEDSEDEENKLVVTSLCHHSNLILWVQGLATGFC
3029 KDVHGEIKIIKRLSLESTEQDVIQIYQYKIQDKNVTFFARGLSAAVL"
3030 ORIGIN
3031 1 cacacacaca cgcagccgcc atgctggagg agctgaacga actgctggac gccaccccgc
3032 61 agcgcccgga cacgggtaaa ttcacactgc tgcgagacag cagaacggat ggcagcttcc
3033 121 tggtgcacca cttcctctcc ttctacctca gagctggctg caaggtttgc ttcctggccc
3034 181 tggtccagtc cttcagtcac tataacatcg tagcacagaa gctgggagtc agtctgacag
3035 241 ctgccaagga gcggggacag cttgtctttt tggaaggcct caagtcctgc cttgacctcg
3036 301 tgtttgggga ggaggagccg tcaggacagc ccagtcctct tcagtttata agtgggagcg
3037 361 tttccaacct caaagacctg tttgacttcg tccggacgtc cctggcgccc actgacagcg
3038 421 actcctggaa gggccgggtg ctgctggtgg atgatctcag cgtgctgctc agcctgggtg
3039 481 ctgcgccagt ggacgtgctg gacttcatcc actactgcag aatggtggtg tgctctcagc
3040 541 tcaaggggaa cattgtggtg ctggttcatg gcagcgagga ttcagaagat gaggagaaca
3041 601 agctggtggt gacctccctg tgtcatcaca gcaacctgat cctgtgggtg caggggctgg
3042 661 caactggctt ctgcaaggat gttcatgggg agattaaaat aattaagaga ctgtccttgg
3043 721 agtcaacaga gcaggacgtc atccagatct accagtacaa gatccaggac aagaatgtca
3044 781 ccttttttgc tagagggctg tcagctgctg tcctgtgatg cagtgatacc acacagagct
3045 841 gtgagagcac cgcagcacaa ggagaactgc tactgacgat tggaacctat agattggtac
3046 901 ctatagatcg gatgtgctgc aaaaccagcc tgcttgcttc ctcggtgcct tccaggagct
3047 961 gtacagcaac ctggcctaag agggaagctt aatagcatct cgaactgcat gcagacaagg
3048 1021 gcatcagctt gccgagagct tgttgcatcc ctttgtcatc ccagcctgtt cccagcacac
3049 1081 aaggccacaa agaacagcac caactgacat ggatgtccct tggagcatgt acatacaagc
3050 1141 agggggcatg ccctgagggc tgggcatgcc tcaccttttc cggttgtgta tggctgcccc
3051 1201 accctggcat ttaaagagat gacacagaga gggcggaggc agggatggct tgggaacatg
3052 1261 ttgcaattct tacctttctc ccagctctgg gatggaagag atttgctcaa ctcccagttg
3053 1321 acacagagtt aaacaataca cagctctgta tatagctgct ctccttgctg atgtaagact
3054 1381 tggaggccgc ctcgcttggg tgcttccttg ctttttgtta cttttaatat aatataaaac
3055 1441 cactgtgccc at
3056 //
3057
3058 LOCUS NM_001277477 759 bp mRNA linear VRT 11-JAN-2017
3059 DEFINITION Gallus gallus retinoic acid receptor responder (tazarotene induced)
3060 2 (RARRES2), transcript variant 2, mRNA.
3061 ACCESSION NM_001277477
3062 VERSION NM_001277477.1
3063 KEYWORDS RefSeq.
3064 SOURCE Gallus gallus (chicken)
3065 ORGANISM Gallus gallus
3066 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3067 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3068 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3069 Phasianidae; Phasianinae; Gallus.
3070 REFERENCE 1 (bases 1 to 759)
3071 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3072 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3073 TITLE A comprehensive collection of chicken cDNAs
3074 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3075 PUBMED 12445392
3076 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3077 preliminary review. The reference sequence was derived from
3078 AADN04000184.1, BU267206.1 and BU241015.1.
3079
3080 Transcript Variant: This variant (2) differs in the 3' UTR compared
3081 to variant 1. Both variants 1 and 2 encode the same protein.
3082
3083 Sequence Note: This RefSeq record was created from transcript and
3084 genomic sequence data from different strains because no single
3085 transcript from the same strain was available for the full length
3086 of the gene. The extent of this transcript is supported by
3087 transcript alignments and orthologous data.
3088
3089 ##Evidence-Data-START##
3090 Transcript exon combination :: CR385440.1, BU408629.1 [ECO:0000332]
3091 RNAseq introns :: single sample supports all introns
3092 SAMEA2201357, SAMEA2201358
3093 [ECO:0000348]
3094 ##Evidence-Data-END##
3095 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3096 1-43 AADN04000184.1 4195720-4195762 c
3097 44-64 AADN04000184.1 4195699-4195719 c
3098 65-561 BU267206.1 51-547
3099 562-582 AADN04000184.1 4194254-4194274 c
3100 583-742 AADN04000184.1 4193991-4194150 c
3101 743-759 BU241015.1 671-687
3102 FEATURES Location/Qualifiers
3103 source 1..759
3104 /organism="Gallus gallus"
3105 /mol_type="mRNA"
3106 /db_xref="taxon:9031"
3107 /chromosome="2"
3108 /map="2"
3109 /breed="Red Jungle Fowl"
3110 gene 1..759
3111 /gene="RARRES2"
3112 /gene_synonym="chemerin"
3113 /note="retinoic acid receptor responder (tazarotene
3114 induced) 2"
3115 /db_xref="CGNC:3645"
3116 /db_xref="GeneID:420366"
3117 misc_feature 45..47
3118 /gene="RARRES2"
3119 /gene_synonym="chemerin"
3120 /note="upstream in-frame stop codon"
3121 CDS 81..569
3122 /gene="RARRES2"
3123 /gene_synonym="chemerin"
3124 /note="retinoic acid receptor responder protein 2"
3125 /codon_start=1
3126 /product="retinoic acid receptor responder protein 2
3127 precursor"
3128 /protein_id="NP_001264406.1"
3129 /db_xref="CGNC:3645"
3130 /db_xref="GeneID:420366"
3131 /translation="MKLLLGIAVAVLALADAGQSPLQRRVVKDVLDYFHSRSNVQFLF
3132 REQSVEGAVERVDSSGTFVQLHLNLAQTACRKQAQRKQNCRIMENRRKPVCLACYKFD
3133 SSDVPKVLDKYYNCGPSHHLAMKDIKHRDEAECRAVEEAGKMSDVLYLPGMFAFSKGL
3134 PA"
3135 sig_peptide 81..131
3136 /gene="RARRES2"
3137 /gene_synonym="chemerin"
3138 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
3139 ORIGIN
3140 1 gttcccagga aattggttaa tgagagacca aaatcaacaa gcagtagtgg gcagcaggct
3141 61 ggccgggccg cgcagtgggg atgaagctgc tgctgggcat cgccgtggcc gtgctggcgt
3142 121 tggcagacgc cgggcagagc cctctgcagc ggcgcgtggt gaaggatgtg ctggactact
3143 181 tccacagccg cagcaacgtc cagttcctct ttagggagca gtcggtggaa ggggccgtcg
3144 241 agagagtgga ctcatcgggg acgttcgtcc agctgcacct taacctcgca cagacggcat
3145 301 gcaggaagca ggcacagagg aaacagaact gcaggatcat ggagaacagg aggaagccag
3146 361 tctgcttggc ctgctacaag tttgacagca gcgatgtccc caaggtgctg gacaagtact
3147 421 acaactgtgg ccccagccac cacctggcca tgaaggacat caagcaccgt gacgaggctg
3148 481 agtgcagggc tgtggaggag gccggcaaga tgagtgatgt cctctatctg ccaggcatgt
3149 541 ttgctttctc caaggggctg ccagcctagg tgcccacaca catccagcgg ccgctgcatc
3150 601 cccagcccag gaggaggatg ctggcctggg gccccccaac ccccagcttg ctgcccccca
3151 661 gcgctgtgca gtgaagggaa ggtcgtcccg cagtgccccc cggctcctgg cagtgtctgc
3152 721 atgcaccatt aaaccccagc tctgcctctg tttctctgc
3153 //
3154
3155 LOCUS NM_001277476 782 bp mRNA linear VRT 11-JAN-2017
3156 DEFINITION Gallus gallus retinoic acid receptor responder (tazarotene induced)
3157 2 (RARRES2), transcript variant 1, mRNA.
3158 ACCESSION NM_001277476 XM_003640642 XM_418471
3159 VERSION NM_001277476.1
3160 KEYWORDS RefSeq.
3161 SOURCE Gallus gallus (chicken)
3162 ORGANISM Gallus gallus
3163 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3164 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3165 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3166 Phasianidae; Phasianinae; Gallus.
3167 REFERENCE 1 (bases 1 to 782)
3168 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3169 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3170 TITLE A comprehensive collection of chicken cDNAs
3171 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3172 PUBMED 12445392
3173 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3174 preliminary review. The reference sequence was derived from
3175 AADN04000184.1, BX271418.4 and BX932071.2.
3176 On or before Apr 10, 2013 this sequence version replaced
3177 gi:363729706, gi:363729708.
3178
3179 Transcript Variant: This variant (1) represents the longer
3180 transcript. Both variants 1 and 2 encode the same protein.
3181
3182 Sequence Note: This RefSeq record was created from transcript and
3183 genomic sequence data from different strains because no single
3184 transcript from the same strain was available for the full length
3185 of the gene. The extent of this transcript is supported by
3186 transcript alignments and orthologous data.
3187
3188 ##Evidence-Data-START##
3189 Transcript exon combination :: BX932071.2, BU125657.1 [ECO:0000332]
3190 RNAseq introns :: single sample supports all introns
3191 SAMEA2201357, SAMEA2201358
3192 [ECO:0000348]
3193 ##Evidence-Data-END##
3194 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3195 1-65 AADN04000184.1 4195698-4195762 c
3196 66-550 BX271418.4 39-523
3197 551-772 BX932071.2 483-704
3198 773-782 AADN04000184.1 4193974-4193983 c
3199 FEATURES Location/Qualifiers
3200 source 1..782
3201 /organism="Gallus gallus"
3202 /mol_type="mRNA"
3203 /db_xref="taxon:9031"
3204 /chromosome="2"
3205 /map="2"
3206 /breed="Red Jungle Fowl"
3207 gene 1..782
3208 /gene="RARRES2"
3209 /gene_synonym="chemerin"
3210 /note="retinoic acid receptor responder (tazarotene
3211 induced) 2"
3212 /db_xref="CGNC:3645"
3213 /db_xref="GeneID:420366"
3214 misc_feature 45..47
3215 /gene="RARRES2"
3216 /gene_synonym="chemerin"
3217 /note="upstream in-frame stop codon"
3218 CDS 81..569
3219 /gene="RARRES2"
3220 /gene_synonym="chemerin"
3221 /note="retinoic acid receptor responder protein 2"
3222 /codon_start=1
3223 /product="retinoic acid receptor responder protein 2
3224 precursor"
3225 /protein_id="NP_001264405.1"
3226 /db_xref="CGNC:3645"
3227 /db_xref="GeneID:420366"
3228 /translation="MKLLLGIAVAVLALADAGQSPLQRRVVKDVLDYFHSRSNVQFLF
3229 REQSVEGAVERVDSSGTFVQLHLNLAQTACRKQAQRKQNCRIMENRRKPVCLACYKFD
3230 SSDVPKVLDKYYNCGPSHHLAMKDIKHRDEAECRAVEEAGKMSDVLYLPGMFAFSKGL
3231 PA"
3232 sig_peptide 81..131
3233 /gene="RARRES2"
3234 /gene_synonym="chemerin"
3235 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
3236 ORIGIN
3237 1 gttcccagga aattggttaa tgagagacca aaatcaacaa gcagtagtgg gcagcaggct
3238 61 ggccgggccg cgcagtgggg atgaagctgc tgctgggcat cgccgtggcc gtgctggcgt
3239 121 tggcagacgc cgggcagagc cctctgcagc ggcgcgtggt gaaggatgtg ctggactact
3240 181 tccacagccg cagcaacgtc cagttcctct ttagggagca gtcggtggaa ggggccgtcg
3241 241 agagagtgga ctcatcgggg acgttcgtcc agctgcacct taacctcgca cagacggcat
3242 301 gcaggaagca ggcacagagg aaacagaact gcaggatcat ggagaacagg aggaagccag
3243 361 tctgcttggc ctgctacaag tttgacagca gcgatgtccc caaggtgctg gacaagtact
3244 421 acaactgtgg ccccagccac cacctggcca tgaaggacat caagcaccgt gacgaggctg
3245 481 agtgcagggc tgtggaggag gccggcaaga tgagtgatgt cctctatctg ccaggcatgt
3246 541 ttgctttctc caaggggctg ccagcctagg tgcccacaca cacaccccct gtcccctctc
3247 601 cgcagtccag cggccgctgc atccccagcc caggaggagg atgctggcct ggggcccccc
3248 661 aacccccagc ttgctgcccc ccagcgctgt gcagtgaagg gaaggtcgtc ccgcagtgcc
3249 721 ccccggctcc tggcagtgtc tgcatgcacc attaaacccc agctctgcct ctgtttctct
3250 781 gc
3251 //
3252
3253 LOCUS NM_001199231 2038 bp mRNA linear VRT 11-JAN-2017
3254 DEFINITION Gallus gallus small integral membrane protein 15 (SMIM15), mRNA.
3255 ACCESSION NM_001199231 XM_001233977
3256 VERSION NM_001199231.2
3257 KEYWORDS RefSeq.
3258 SOURCE Gallus gallus (chicken)
3259 ORGANISM Gallus gallus
3260 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3261 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3262 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3263 Phasianidae; Phasianinae; Gallus.
3264 REFERENCE 1 (bases 1 to 2038)
3265 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
3266 Burnside J, Aggrey SE, Simon J and Cogburn LA.
3267 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
3268 from single and multiple tissue cDNA libraries and CAP3 assembly of
3269 a chicken gene index
3270 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
3271 PUBMED 16554550
3272 REFERENCE 2 (bases 1 to 2038)
3273 AUTHORS Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
3274 HS, Cho BW and Han JY.
3275 TITLE Analysis of chicken embryonic gonad expressed sequenced tags
3276 JOURNAL Anim. Genet. 37 (1), 85-86 (2006)
3277 PUBMED 16441308
3278 REFERENCE 3 (bases 1 to 2038)
3279 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
3280 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
3281 P, Hayashizaki Y and Buerstedde JM.
3282 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
3283 gene function analysis
3284 JOURNAL Genome Biol. 6 (1), R6 (2005)
3285 PUBMED 15642098
3286 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3287 preliminary review. The reference sequence was derived from
3288 AJ453243.1, AC188450.3, BI394192.1 and CV853891.1.
3289 On Jan 12, 2012 this sequence version replaced gi:312839851.
3290
3291 Sequence Note: This RefSeq record was created from transcript and
3292 genomic sequence data to make the sequence consistent with the
3293 reference genome assembly. The genomic coordinates used for the
3294 transcript record were based on transcript alignments.
3295
3296 ##Evidence-Data-START##
3297 Transcript exon combination :: AJ453243.1, AJ448907.1 [ECO:0000332]
3298 RNAseq introns :: single sample supports all introns
3299 SAMEA2201375, SAMEA2201377
3300 [ECO:0000348]
3301 ##Evidence-Data-END##
3302 COMPLETENESS: complete on the 3' end.
3303 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3304 1-12 AJ453243.1 2-13
3305 13-16 AC188450.3 187484-187487 c
3306 17-57 AJ453243.1 18-58
3307 58-67 AJ453243.1 60-69
3308 68-639 BI394192.1 1-572
3309 640-1838 AC188450.3 184697-185895 c
3310 1839-2038 CV853891.1 482-681
3311 FEATURES Location/Qualifiers
3312 source 1..2038
3313 /organism="Gallus gallus"
3314 /mol_type="mRNA"
3315 /db_xref="taxon:9031"
3316 /chromosome="Z"
3317 /map="Z"
3318 gene 1..2038
3319 /gene="SMIM15"
3320 /gene_synonym="C5orf43; CZH5ORF43"
3321 /note="small integral membrane protein 15"
3322 /db_xref="CGNC:56176"
3323 /db_xref="GeneID:770642"
3324 misc_feature 27..29
3325 /gene="SMIM15"
3326 /gene_synonym="C5orf43; CZH5ORF43"
3327 /note="upstream in-frame stop codon"
3328 CDS 141..365
3329 /gene="SMIM15"
3330 /gene_synonym="C5orf43; CZH5ORF43"
3331 /note="UPF0542 protein C5orf43 homolog"
3332 /codon_start=1
3333 /product="small integral membrane protein 15"
3334 /protein_id="NP_001186160.1"
3335 /db_xref="CGNC:56176"
3336 /db_xref="GeneID:770642"
3337 /translation="MFDVKAWAVYIVEWAAKDPYGFLTTVILVLTPLFIISAALSWKL
3338 AKMIETREREQKKKRKRQENIVKAKRAKKD"
3339 misc_feature 198..260
3340 /gene="SMIM15"
3341 /gene_synonym="C5orf43; CZH5ORF43"
3342 /experiment="experimental evidence, no additional details
3343 recorded"
3344 /note="propagated from UniProtKB/Swiss-Prot (Q5F409.1);
3345 transmembrane region"
3346 ORIGIN
3347 1 gcttcttgct tcctgcttcc gctcggtagc gcggcgcgcc gcggggtagc gggacctggt
3348 61 gctgctcgtc cgtcgcttgc cgcgcccgcg gcgccggcct acctctggtg cagtgtttcc
3349 121 cccataacaa agcggctgag atgtttgacg tgaaggcttg ggctgtgtac attgtggaat
3350 181 gggctgccaa ggacccctat ggcttcctca ctacggtgat cctggtcctc acgcccctgt
3351 241 tcatcatcag cgcggcactg tcgtggaagc ttgcaaagat gattgagacc agggagcgag
3352 301 agcagaagaa gaaacggaaa cgccaggaga acattgtgaa ggccaaacga gcaaagaagg
3353 361 attaaatggg caagaaaggc cttccttggg cagagaattc actttattga tggagcactg
3354 421 ctgtacattt tgtgttgtaa ccatcctttg atacttgatg ctgttgtttc ttgaattatg
3355 481 agattttaac ttcttgagaa tatttttttt ctgctgaaat catctgtgtt agaagttgcc
3356 541 ccagtgacac agtcacttca tctcctgctt atatttccat gcagactgct tctctaaatt
3357 601 tgcatgttat atttaaaaat gaaatagtcg gggagcatta ggggcatatc tttttcctta
3358 661 gctgagctat gactcaaaga gagtcaaatt atggggataa tgtaaatgac tccttaatgc
3359 721 tatgaccttt ggtttcttag tgtagcacac ccttctccat tgcagcagta gttcatgttg
3360 781 tgcttacgtg tatttgcagt tcctggttta actggactac aggaagggag gttctggtac
3361 841 acctgcagca gagctacaga gcagctagct tctgagcttc ttgtttgctg ttgtgtttga
3362 901 ctgacacact ttcaaggcat gcagtgcgta tggctgtgca gttcattcac tgcatgccca
3363 961 tcaggtctgc agtagctcag ctcatggggc ttgtctgcac catgaaccaa actgactcct
3364 1021 cctgtttcct ccacaaccca cccatcagca gtcttcatat tcagcccaaa ctctgggaaa
3365 1081 ccgattgctt atcttcagta tcttcatttg tctgaggcta ctcgtgttct acagagtaca
3366 1141 ctatagcgtt gtctggtttt ccctaattat cacctgaaca gtccatctct aacttgtttg
3367 1201 tctgtagaag cttttttgcc tcaaagaata gccataagtg ggatcagatg aaaggcccag
3368 1261 gtggccttga gttctgtctt ttgtgacctg tagcagttgg ccaagggaga ctacccaagt
3369 1321 ctgatatgca cgctggtgac acaagttatt cctaattgct agccctgtag ctacctgcac
3370 1381 tttaggacct tctgagttca ggtggtatca ttttgttctg atagctcttg aagatctgct
3371 1441 gtacgccagg ttacaaaatg ctggcatagc agaaaaagtc caagtgaggt ttctgttgta
3372 1501 aatacgccaa aattttttaa cctcgattcc aattcatctt tttctaacaa atgattaatt
3373 1561 tttcacagcc tgacttctat cagcctaatt ctaaagagtc tgtggaagtc attaggtttt
3374 1621 tagacagcat atttctaaat ggcagcatgg agctgtgctt tctagcaact agtccattat
3375 1681 atggttaaaa gtaaaatctt aagataatgt cccattcagc agagacctat agagctagct
3376 1741 gacagcagca agataagggg gaagttttac tgaaatgact tgaagtaaat atgaagtact
3377 1801 tagctgcaac cagtatctga tgaccatctt tccgttctgt tggtcagaac agcaagcatt
3378 1861 actggaatga tgttttgaca ctttgtggta catgacatta aatcaccact cttggaaatg
3379 1921 tcaaatgtgt atgtattcca cctttgatac ctagatagtt caaaatgcat acctacatgg
3380 1981 tttaaaataa atttgatact ttttcaaaat atacttttta aaaaaaaaaa aaaaaaaa
3381 //
3382
3383 LOCUS NM_001031013 971 bp mRNA linear VRT 11-JAN-2017
3384 DEFINITION Gallus gallus low density lipoprotein receptor class A domain
3385 containing 4 (LDLRAD4), mRNA.
3386 ACCESSION NM_001031013 XM_419130
3387 VERSION NM_001031013.2
3388 KEYWORDS RefSeq.
3389 SOURCE Gallus gallus (chicken)
3390 ORGANISM Gallus gallus
3391 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3392 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3393 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3394 Phasianidae; Phasianinae; Gallus.
3395 REFERENCE 1 (bases 1 to 971)
3396 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
3397 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
3398 P, Hayashizaki Y and Buerstedde JM.
3399 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
3400 gene function analysis
3401 JOURNAL Genome Biol. 6 (1), R6 (2005)
3402 PUBMED 15642098
3403 REFERENCE 2 (bases 1 to 971)
3404 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3405 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3406 TITLE A comprehensive collection of chicken cDNAs
3407 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3408 PUBMED 12445392
3409 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3410 preliminary review. The reference sequence was derived from
3411 AJ720368.1 and BU264529.1.
3412 On Nov 22, 2011 this sequence version replaced gi:71896400.
3413
3414 ##Evidence-Data-START##
3415 RNAseq introns :: mixed/partial sample support SAMEA2201357,
3416 SAMEA2201358 [ECO:0000350]
3417 ##Evidence-Data-END##
3418 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3419 1-272 AJ720368.1 1-272
3420 273-292 BU264529.1 99-118
3421 293-971 AJ720368.1 1501-2179
3422 FEATURES Location/Qualifiers
3423 source 1..971
3424 /organism="Gallus gallus"
3425 /mol_type="mRNA"
3426 /db_xref="taxon:9031"
3427 /chromosome="2"
3428 /map="2"
3429 /breed="Leghorn"
3430 gene 1..971
3431 /gene="LDLRAD4"
3432 /gene_synonym="C18orf1; C2H18ORF1"
3433 /note="low density lipoprotein receptor class A domain
3434 containing 4"
3435 /db_xref="CGNC:51390"
3436 /db_xref="GeneID:421044"
3437 misc_feature 67..69
3438 /gene="LDLRAD4"
3439 /gene_synonym="C18orf1; C2H18ORF1"
3440 /note="upstream in-frame stop codon"
3441 CDS 121..822
3442 /gene="LDLRAD4"
3443 /gene_synonym="C18orf1; C2H18ORF1"
3444 /note="clone 22"
3445 /codon_start=1
3446 /product="low-density lipoprotein receptor class A
3447 domain-containing protein 4"
3448 /protein_id="NP_001026184.2"
3449 /db_xref="CGNC:51390"
3450 /db_xref="GeneID:421044"
3451 /translation="MVVVIICLLNHYKLSTRSFINRQSQSRRQEDTLQTEGCLWPSES
3452 SVSRQGASEIMYAPRSRDRFTAPSFMQRDRFSRFQPTYPYMQHEIDLPPTISLSDGEE
3453 PPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDISMYNGGPCPPSSNSGI
3454 SATNYSSNGRMEGPPPTYSEVMGHYPGSSFFHHQHSNAPPSSQRGSRLQFQQNNSEST
3455 IVPSKGQDRKPGNLV"
3456 ORIGIN
3457 1 gagggcgcgg aggctccgcc gggcgccggg cggccgcggc ttaaagagcg gcgcggcgct
3458 61 gcgcggtaag ctgaactgga gtttgttcaa atcatcatta tcatcgtggt tataactgtt
3459 121 atggtggtag tgatcatctg cttgttgaac cattacaaac tatcgacgcg ctcctttatc
3460 181 aaccggcaga gccaaagcag aagacaggag gatactttgc agacagaagg gtgcttgtgg
3461 241 ccttcggaaa gctcagtttc acgccagggt gcttcagaga ttatgtatgc tccaaggtcc
3462 301 agggacaggt ttaccgcccc atcttttatg cagcgggacc gtttcagtcg cttccagccc
3463 361 acttacccat acatgcagca tgagattgac cttcctccaa ccatttccct ctcagatggg
3464 421 gaagagccgc cgccatacca aggcccgtgc accctgcagc tccgggaccc agagcagcag
3465 481 atggagctca accgggaatc tgtcagggca ccgcccaacc gaaccatttt tgatagcgac
3466 541 ttgatagaca tttccatgta caatgggggc ccctgcccac cgagcagcaa ttcgggcata
3467 601 agtgcaacca actatagcag taatggaagg atggaaggac cacccccgac gtacagcgag
3468 661 gtcatggggc actacccagg ctcctcgttt ttccatcacc agcacagcaa cgctcctcct
3469 721 tcctcgcaga gggggagcag acttcagttt cagcagaaca attcagagag cacaattgtc
3470 781 cccagcaaag gccaagaccg gaaaccaggg aacctggtct aagtcactct ccgacgtgca
3471 841 tttggactga agacaagaga ttgaagcagg gcggcggagg aagagccccg tgctccggtg
3472 901 cacaatgttg ttacatttca cgtggtacaa cttagtaaaa ccaaacgtgc aaaccaaaaa
3473 961 aaaaaaaaaa a
3474 //
3475
3476 LOCUS NM_001195562 2664 bp mRNA linear VRT 11-JAN-2017
3477 DEFINITION Gallus gallus patched domain containing 4 (PTCHD4), mRNA.
3478 ACCESSION NM_001195562 XM_420069
3479 VERSION NM_001195562.1
3480 KEYWORDS RefSeq.
3481 SOURCE Gallus gallus (chicken)
3482 ORGANISM Gallus gallus
3483 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3484 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3485 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3486 Phasianidae; Phasianinae; Gallus.
3487 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3488 preliminary review. The reference sequence was derived from
3489 AADN04000287.1.
3490 On Sep 17, 2010 this sequence version replaced gi:118089240.
3491
3492 Sequence Note: The RefSeq transcript and protein were derived from
3493 genomic sequence to make the sequence consistent with the reference
3494 genome assembly. The genomic coordinates used for the transcript
3495 record were based on alignments.
3496
3497 ##Evidence-Data-START##
3498 RNAseq introns :: single sample supports all introns SAMEA2201363,
3499 SAMEA2201366 [ECO:0000348]
3500 ##Evidence-Data-END##
3501 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3502 1-549 AADN04000287.1 582005-582553
3503 550-1030 AADN04000287.1 607213-607693
3504 1031-2664 AADN04000287.1 664513-666146
3505 FEATURES Location/Qualifiers
3506 source 1..2664
3507 /organism="Gallus gallus"
3508 /mol_type="mRNA"
3509 /db_xref="taxon:9031"
3510 /chromosome="3"
3511 /map="3"
3512 /breed="Red Jungle Fowl"
3513 gene 1..2664
3514 /gene="PTCHD4"
3515 /gene_synonym="C3H6ORF138; C6orf138; dJ402H5.2"
3516 /note="patched domain containing 4"
3517 /db_xref="CGNC:51608"
3518 /db_xref="GeneID:422064"
3519 CDS 1..2664
3520 /gene="PTCHD4"
3521 /gene_synonym="C3H6ORF138; C6orf138; dJ402H5.2"
3522 /note="patched domain-containing protein C6orf138"
3523 /codon_start=1
3524 /product="patched domain-containing protein 4"
3525 /protein_id="NP_001182491.1"
3526 /db_xref="CGNC:51608"
3527 /db_xref="GeneID:422064"
3528 /translation="MLRQVIHRGLQSFFYKLGLFVSRHPVFFLTVPAVLTIIFGFSLL
3529 NRFQPDTDLESLVAPSHSLAKIERSLASSLFSLDQSKSQLYSDLHTPGRYGRVILLSK
3530 PGGNILHQADVILQIHRAVLEMKVNYKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDL
3531 RQAALSNKTTARVQVSYPNTKLKDGRSSFIGHQLGGVMEVPNSKDQRVKSARAIQITY
3532 YLQTYGSVTQDLIGEKWESEFCKLMHKMQLDHQDLQLYSLASFSLWKDFHQTSLLARG
3533 KILVSLMLILLTATLSSSMKDCLRSKPFLGLLGVLTICISSVTAAGIFFITDGKYNST
3534 LLGIPFFAMGHGTKGVFELLSGWRRTRENLPFKDRVADAYSDVMVSYTMTSSLYFIAF
3535 GMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKI
3536 PSAEYLDRKPVWFQTMMNDGHQHSSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFV
3537 VILYLIYASFSFMGCLQINDGANIINLLASESPSVSYALIQQKYFSNYSPVIGFYIYE
3538 PLEYWNGTVQEDLKTLSQGFNTVSWIEQYYQFLRVGNISATNKSDFISILQSNFLKKP
3539 EFQHFKNDIIFSKAGDENNIIASRLYLVARTSENTQREAVELLEKLRPLSLIQSIKFI
3540 VFNPTFVFMDHYGLSVTMPVLISGFGILLVLILTFFLVIHPLGNFWLILSVTSIELGV
3541 LGLMTLWNVDMDWISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKNSLQEHGT
3542 AILQNVSSFLIGLVPLLFVPSNLTFTLFKCLLLAGSCTLLHCFVILPVFLTFFPPSKK
3543 HHKKKKRAKRKEREEIECIEIQENPDHVTAV"
3544 ORIGIN
3545 1 atgctgcggc aggtgataca cagagggctc cagtcgtttt tctacaagct gggcttattc
3546 61 gtgagcaggc atccggtgtt tttcctcact gtgcccgcag tcctgaccat catcttcggc
3547 121 ttcagcctgc tcaaccgctt ccagcctgac actgacctgg agagcctggt agcccccagc
3548 181 cacagcctgg ccaagatcga gaggagctta gccagcagcc tgttctccct cgatcaatcc
3549 241 aaaagccagc tgtattcgga cttgcacacc ccggggaggt atggcagggt gattctcctc
3550 301 tccaaacccg gaggcaatat tttgcatcag gctgatgtga tcctgcagat ccaccgagcc
3551 361 gtgctggaaa tgaaggtgaa ctacaaaggc tataattata ctttttccca tctgtgtgtg
3552 421 ttgagaaatc aggataagaa atgcgtgctg gatgatatta tttcagtgct agaggatctg
3553 481 aggcaggctg ccctctccaa taagacaaca gccagggtgc aagtgagcta tcccaacact
3554 541 aaattaaagg atggaaggag cagttttatt ggccaccagc ttggaggggt catggaagtg
3555 601 cccaacagca aggaccagag agtcaaatca gccagagcca tccaaatcac ttactacctc
3556 661 caaacgtatg gctctgtcac ccaggacctc attggggaga agtgggagag tgaattctgt
3557 721 aaactgatgc acaagatgca gctggatcac caagatctgc agctctactc gctggcgtcc
3558 781 ttcagcctct ggaaggactt ccaccagacc agtctcttgg ccaggggcaa gattttggtg
3559 841 agcctgatgc tgatcctcct gactgctacc ctctcgagct ccatgaagga ctgcctgcgt
3560 901 agcaaacctt tcctgggact cttgggagta ctcactatct gtatttccag tgtcactgcg
3561 961 gcagggatat ttttcattac tgatggaaaa tataattcta ctctgttggg aatccctttc
3562 1021 ttcgctatgg gtcatggaac caaaggagta ttcgaacttc tttcaggatg gcgtcgaaca
3563 1081 agagaaaatc ttccattcaa ggacagagta gcagatgcct actcagatgt catggtgtcc
3564 1141 tatacaatga caagctcctt gtatttcata gcctttggca tgggtgcaag ccctttcact
3565 1201 aacattgaag ccgtaaaagt cttttgccag aacatgtgtg tctccatcct gttgaactac
3566 1261 ttctatatct tctcattctt tggctcctgc ctggtctttg ctggccagtt ggagcagaac
3567 1321 cgttaccaca gtatcttctg ctgtaaaatc ccttcagcag aatacctgga ccggaagcct
3568 1381 gtgtggttcc agaccatgat gaatgatggc catcaacatt cttctcatca tgagaccaac
3569 1441 ccataccagc atcactttat ccagcatttc ctccgagagc attacaatga gtggattacc
3570 1501 aacatctatg tcaagccttt tgtggtgata ctgtatctca tctatgcctc tttctccttc
3571 1561 atggggtgct tacagattaa tgatggagcc aacattatta accttcttgc cagtgagtct
3572 1621 ccaagcgtct cctatgccct cattcagcaa aagtacttca gcaactacag cccggtgata
3573 1681 ggattctata tttacgaacc tctggagtac tggaatggca ctgtgcaaga agacctaaaa
3574 1741 acactgagcc aagggttcaa cacagtgtcc tggatcgaac agtattacca gttccttcga
3575 1801 gtgggtaaca tcagtgcaac taacaaaagt gactttatca gtatcctcca gagcaacttt
3576 1861 ttaaaaaagc cagaattcca gcacttcaaa aatgacatca tattctctaa agctggagat
3577 1921 gagaataaca taatagcttc tcgtttgtac ctggtggcca ggacgagtga aaacacacag
3578 1981 agggaggcag tggaattact ggagaaactg agaccgctct ctcttataca gagcatcaag
3579 2041 ttcatagtgt tcaatcctac ctttgttttc atggaccact atggtttatc agtaactatg
3580 2101 cctgtcctga tttctggttt tggcatcctg ttggtgttaa tactgacctt tttcctggtt
3581 2161 atccatcctc tgggaaattt ctggttgatt ctcagcgtca cctcaataga gctgggcgtc
3582 2221 cttggcttga tgaccttatg gaatgtagac atggattgga tttctatact gtgccttatc
3583 2281 tacaccttga attttgccat agatcactgt gcacccctgc tttatacatt tgtactagct
3584 2341 actgagcaca cccgaactca atgtataaag aactccctcc aagagcatgg gacagccatt
3585 2401 ttgcagaacg tttcttcttt tcttattggg ttggtccccc ttctctttgt gccttcaaac
3586 2461 ttgaccttca cactgttcaa atgcttgctg cttgccggca gttgcacact tctgcactgt
3587 2521 tttgttattt tgcccgtctt tctaaccttt ttcccacctt ccaaaaagca ccacaaaaaa
3588 2581 aagaaacgag ccaaaaggaa ggaacgagaa gagattgaat gcatagagat tcaggagaat
3589 2641 cctgatcacg tgacagcagt ctga
3590 //
3591
3592 LOCUS NM_001194996 1525 bp mRNA linear VRT 11-JAN-2017
3593 DEFINITION Gallus gallus trafficking protein particle complex 13 (TRAPPC13),
3594 transcript variant 1, mRNA.
3595 ACCESSION NM_001194996
3596 VERSION NM_001194996.1
3597 KEYWORDS RefSeq.
3598 SOURCE Gallus gallus (chicken)
3599 ORGANISM Gallus gallus
3600 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3601 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3602 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3603 Phasianidae; Phasianinae; Gallus.
3604 REFERENCE 1 (bases 1 to 1525)
3605 AUTHORS Froman DP, Kirby JD and Rhoads DD.
3606 TITLE An expressed sequence tag analysis of the chicken reproductive
3607 tract transcriptome
3608 JOURNAL Poult. Sci. 85 (8), 1438-1441 (2006)
3609 PUBMED 16903475
3610 REFERENCE 2 (bases 1 to 1525)
3611 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
3612 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
3613 P, Hayashizaki Y and Buerstedde JM.
3614 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
3615 gene function analysis
3616 JOURNAL Genome Biol. 6 (1), R6 (2005)
3617 PUBMED 15642098
3618 REFERENCE 3 (bases 1 to 1525)
3619 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3620 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3621 TITLE A comprehensive collection of chicken cDNAs
3622 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3623 PUBMED 12445392
3624 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3625 preliminary review. The reference sequence was derived from
3626 AC187110.2, BU335726.1, BU388633.1 and AC145935.3.
3627
3628 Transcript Variant: This variant (1) represents the longer
3629 transcript and encodes the longer isoform (1).
3630
3631 Sequence Note: This RefSeq record was created from transcript and
3632 genomic sequence data to make the sequence consistent with the
3633 reference genome assembly. The genomic coordinates used for the
3634 transcript record were based on transcript alignments.
3635
3636 ##Evidence-Data-START##
3637 RNAseq introns :: single sample supports all introns SAMEA2201357,
3638 SAMEA2201361 [ECO:0000348]
3639 ##Evidence-Data-END##
3640 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3641 1-27 AC187110.2 219680-219706
3642 28-789 BU335726.1 1-762
3643 790-1336 BU388633.1 42-588
3644 1337-1525 AC145935.3 50710-50898
3645 FEATURES Location/Qualifiers
3646 source 1..1525
3647 /organism="Gallus gallus"
3648 /mol_type="mRNA"
3649 /db_xref="taxon:9031"
3650 /chromosome="Z"
3651 /map="Z"
3652 /breed="Red Jungle Fowl"
3653 gene 1..1525
3654 /gene="TRAPPC13"
3655 /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
3656 /note="trafficking protein particle complex 13"
3657 /db_xref="CGNC:53002"
3658 /db_xref="GeneID:427165"
3659 CDS 58..1314
3660 /gene="TRAPPC13"
3661 /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
3662 /note="isoform 1 is encoded by transcript variant 1;
3663 UPF0533 protein C5orf44; trafficking protein particle
3664 complex subunit 13"
3665 /codon_start=1
3666 /product="trafficking protein particle complex subunit 13
3667 isoform 1"
3668 /protein_id="NP_001181925.1"
3669 /db_xref="CGNC:53002"
3670 /db_xref="GeneID:427165"
3671 /translation="MDVNQPKQEHLLALKVMRLTKPTLFTNIPVTCEERDLPGNLFNQ
3672 LMKDDPSTVKGAEALMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
3673 LQTSSQRLNLSASTAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYF
3674 RKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIM
3675 YNVAELNTVDSAGESESTFGSRTYLQPMDTRQYLYCLKPKQEFAEKAGVIKGVTVIGK
3676 LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLETIPDTVNLEEPFDITCKITNCSS
3677 ERTMDLVLEMCNTNSIHWCGVSGRQLGKLHPSSSLRLALTLLSSVQGLQSVSGLRLTD
3678 TFLKRTYEYDDIAQVCVVSSKVKQES"
3679 ORIGIN
3680 1 gcgctgtgct tacgcacttc ttccctggtt gcggcggcca ggtctcgcgg ccgcaccatg
3681 61 gacgttaacc agcccaagca ggagcacctg ctggccctga aagtgatgag gttaacaaaa
3682 121 cctaccttat tcactaatat tccagtgact tgtgaagaaa gagatttgcc aggtaatcta
3683 181 tttaaccagc tcatgaaaga tgatccttct actgtaaaag gagcagaagc tttgatgcta
3684 241 ggagaaatgc tgactttgcc tcaaaatttt ggaaatatat ttctgggaga aacattttcc
3685 301 agttacatta gtgtacataa tgatagtaat caagttgtca aggacatact ggtgaaggct
3686 361 gatcttcaga caagttctca gcgcttgaac ctttcagctt ctactgctgc agtggcagaa
3687 421 cttaaacctg actgctgtat tgatgatgtg attcatcacg aagtgaagga aataggaacg
3688 481 cacatcttag tttgtgcagt aagttatact acgcaagcag gagagaagat gtatttcaga
3689 541 aagttcttca aatttcaggt gctcaaacca ctagatgtga aaaccaaatt ctacaatgcg
3690 601 gagagtgacc tcagttctgt gacagatgaa gtgtttctgg aagctcagat tcagaatatc
3691 661 actacctctc caatgtttat ggagaaggtt tctttagagc catccattat gtacaacgtt
3692 721 gcagaactga acacagttga ctcagcaggg gaaagtgagt caacttttgg ctcaagaact
3693 781 tacttacaac ctatggacac acgtcagtat ttatattgcc tgaaaccaaa gcaggaattt
3694 841 gcagagaaag ctggcgtaat aaaaggtgta actgtgattg gtaaactaga tatcgtatgg
3695 901 aaaacgaatc taggtgagcg aggaagactg caaactagcc agctccaaag aatggctcct
3696 961 ggctatggtg atgtaaggct ttctctggag acaataccag acaccgtaaa tttggaagag
3697 1021 ccttttgata ttacttgtaa aataacaaat tgcagcagtg aaaggactat ggatctggtt
3698 1081 ttagaaatgt gcaatactaa ttccatccac tggtgtggag tttctggaag acaacttgga
3699 1141 aaattacatc ctagttcctc tctccgtctt gcacttacat tattgtcttc agtgcaggga
3700 1201 ttgcaaagtg tttctggctt aagacttacc gacacatttt tgaagagaac atacgaatat
3701 1261 gatgatattg cacaggtctg cgtcgtttct tcaaaagtaa aacaagaaag ctgaagaaaa
3702 1321 gttttatttc tgctgtttgt tttttttgga ccaacttctt gtgttttttg cagttaaatc
3703 1381 atattgcgta aagagaaaat taacccccag tatatgcata gacacaagtt gcttatttaa
3704 1441 tttctctgag cattttttta atgttttaaa atcttttgaa aagatgtata tgcatctcaa
3705 1501 taaaaataaa gcctttgaaa aaaaa
3706 //
3707
3708 LOCUS NM_001006577 1504 bp mRNA linear VRT 11-JAN-2017
3709 DEFINITION Gallus gallus trafficking protein particle complex 13 (TRAPPC13),
3710 transcript variant 2, mRNA.
3711 ACCESSION NM_001006577 XM_424753
3712 VERSION NM_001006577.2
3713 KEYWORDS RefSeq.
3714 SOURCE Gallus gallus (chicken)
3715 ORGANISM Gallus gallus
3716 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3717 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3718 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3719 Phasianidae; Phasianinae; Gallus.
3720 REFERENCE 1 (bases 1 to 1504)
3721 AUTHORS Froman DP, Kirby JD and Rhoads DD.
3722 TITLE An expressed sequence tag analysis of the chicken reproductive
3723 tract transcriptome
3724 JOURNAL Poult. Sci. 85 (8), 1438-1441 (2006)
3725 PUBMED 16903475
3726 REFERENCE 2 (bases 1 to 1504)
3727 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
3728 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
3729 P, Hayashizaki Y and Buerstedde JM.
3730 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
3731 gene function analysis
3732 JOURNAL Genome Biol. 6 (1), R6 (2005)
3733 PUBMED 15642098
3734 REFERENCE 3 (bases 1 to 1504)
3735 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3736 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3737 TITLE A comprehensive collection of chicken cDNAs
3738 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3739 PUBMED 12445392
3740 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3741 preliminary review. The reference sequence was derived from
3742 AC187110.2, AJ720892.1, DT656730.1 and AC145935.3.
3743 On Aug 17, 2010 this sequence version replaced gi:57527713.
3744
3745 Transcript Variant: This variant (2) lacks an in-frame exon in the
3746 coding region, compared to variant 1. The encoded isoform (2) is
3747 shorter than isoform 1.
3748
3749 Sequence Note: This RefSeq record was created from transcript and
3750 genomic sequence data to make the sequence consistent with the
3751 reference genome assembly. The genomic coordinates used for the
3752 transcript record were based on transcript alignments.
3753
3754 ##Evidence-Data-START##
3755 Transcript exon combination :: AJ720892.1 [ECO:0000332]
3756 RNAseq introns :: single sample supports all introns
3757 SAMEA2201361, SAMEA2201363
3758 [ECO:0000348]
3759 ##Evidence-Data-END##
3760 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3761 1-52 AC187110.2 219680-219731
3762 53-448 AJ720892.1 54-449
3763 449-684 DT656730.1 216-451
3764 685-773 AJ720892.1 688-776
3765 774-786 AJ720892.1 778-790
3766 787-1347 AJ720892.1 792-1352
3767 1348-1348 AC145935.3 50742-50742
3768 1349-1476 AJ720892.1 1353-1480
3769 1477-1504 AC145935.3 50871-50898
3770 FEATURES Location/Qualifiers
3771 source 1..1504
3772 /organism="Gallus gallus"
3773 /mol_type="mRNA"
3774 /db_xref="taxon:9031"
3775 /chromosome="Z"
3776 /map="Z"
3777 /breed="Red Jungle Fowl"
3778 gene 1..1504
3779 /gene="TRAPPC13"
3780 /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
3781 /note="trafficking protein particle complex 13"
3782 /db_xref="CGNC:53002"
3783 /db_xref="GeneID:427165"
3784 CDS 58..1293
3785 /gene="TRAPPC13"
3786 /gene_synonym="C5orf44; CZH5ORF44; Trs65-related"
3787 /note="isoform 2 is encoded by transcript variant 2;
3788 UPF0533 protein C5orf44; trafficking protein particle
3789 complex subunit 13"
3790 /codon_start=1
3791 /product="trafficking protein particle complex subunit 13
3792 isoform 2"
3793 /protein_id="NP_001006577.2"
3794 /db_xref="CGNC:53002"
3795 /db_xref="GeneID:427165"
3796 /translation="MDVNQPKQEHLLALKVMRLTKPTLFTNIPVTCEERDLPGNLFNQ
3797 LMKDDPSTVKGAEALMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
3798 LQTSSQRLNLSASTAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQAGEKMYF
3799 RKFFKFQVLKPLDVKTKFYNAETDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVAEL
3800 NTVDSAGESESTFGSRTYLQPMDTRQYLYCLKPKQEFAEKAGVIKGVTVIGKLDIVWK
3801 TNLGERGRLQTSQLQRMAPGYGDVRLSLETIPDTVNLEEPFDITCKITNCSERTMDLV
3802 LEMCNTNSIHWCGVSGRQLGKLHPSSSLRLALTLLSSVQGLQSVSGLRLTDTFLKRTY
3803 EYDDIAQVCVVSSKVKQES"
3804 ORIGIN
3805 1 gcgctgtgct tacgcacttc ttccctggtt gcggcggcca ggtctcgcgg ccgcaccatg
3806 61 gacgttaacc agcccaagca ggagcacctg ctggccctga aagtgatgag gttaacaaaa
3807 121 cctaccttat tcactaatat tccagtgact tgtgaagaaa gagatttgcc aggtaatcta
3808 181 tttaaccagc tcatgaaaga tgatccttct actgtaaaag gagcagaagc tttgatgcta
3809 241 ggagaaatgc tgactttgcc tcaaaatttt ggaaatatat ttctgggaga aacattttcc
3810 301 agttacatta gtgtacataa tgatagtaat caagttgtca aggacatact ggtgaaggct
3811 361 gatcttcaga caagttctca gcgcttgaac ctttcagctt ctactgctgc agtggcagaa
3812 421 cttaaacctg actgctgtat tgatgatgtg attcatcacg aagtgaagga aataggaacg
3813 481 cacatcttag tttgtgcagt aagttatact acgcaagcag gagagaagat gtatttcaga
3814 541 aagttcttca aatttcaggt gctcaaacca ctagatgtga aaaccaaatt ctacaatgcg
3815 601 gagacagatg aagtgtttct ggaagctcag attcagaata tcactacctc tccaatgttt
3816 661 atggagaagg tttctttaga gccatccatt atgtacaacg ttgcagaact gaacacagtt
3817 721 gactcagcag gggaaagtga gtcaactttt ggctcaagaa cttacttaca acctatggac
3818 781 acacgtcagt atttatattg cctgaaacca aagcaggaat ttgcagagaa agctggcgta
3819 841 ataaaaggtg taactgtgat tggtaaacta gatatcgtat ggaaaacgaa tctaggtgag
3820 901 cgaggaagac tgcaaactag ccagctccaa agaatggctc ctggctatgg tgatgtaagg
3821 961 ctttctctgg agacaatacc agacaccgta aatttggaag agccttttga tattacttgt
3822 1021 aaaataacaa attgcagtga aaggactatg gatctggttt tagaaatgtg caatactaat
3823 1081 tccatccact ggtgtggagt ttctggaaga caacttggaa aattacatcc tagttcctct
3824 1141 ctccgtcttg cacttacatt attgtcttca gtgcagggat tgcaaagtgt ttctggctta
3825 1201 agacttaccg acacattttt gaagagaaca tacgaatatg atgatattgc acaggtctgc
3826 1261 gtcgtttctt caaaagtaaa acaagaaagc tgaagaaaag ttttatttct gctgtttgtt
3827 1321 ttttttggac caacttcttg tgttttttgc agttaaatca tattgcgtaa agagaaaatt
3828 1381 aacccccagt atatgcatag acacaagttg cttatttaat ttctctgagc atttttttaa
3829 1441 tgttttaaaa tcttttgaaa agatgtatat gcatctcaat aaaaataaag cctttgaaaa
3830 1501 aaaa
3831 //
3832
3833 LOCUS NM_001145430 928 bp mRNA linear VRT 11-JAN-2017
3834 DEFINITION Gallus gallus small integral membrane protein 20 (SMIM20), mRNA.
3835 ACCESSION NM_001145430 XM_001232657
3836 VERSION NM_001145430.1
3837 KEYWORDS RefSeq.
3838 SOURCE Gallus gallus (chicken)
3839 ORGANISM Gallus gallus
3840 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3841 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3842 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3843 Phasianidae; Phasianinae; Gallus.
3844 REFERENCE 1 (bases 1 to 928)
3845 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
3846 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
3847 TITLE A comprehensive collection of chicken cDNAs
3848 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
3849 PUBMED 12445392
3850 COMMENT VALIDATED REFSEQ: This record has undergone validation or
3851 preliminary review. The reference sequence was derived from
3852 CR523170.1 and BU307818.1.
3853 On Feb 28, 2009 this sequence version replaced gi:118090651.
3854
3855 ##Evidence-Data-START##
3856 Transcript exon combination :: BX933175.1, CR523170.1 [ECO:0000332]
3857 RNAseq introns :: single sample supports all introns
3858 SAMEA2201368, SAMEA2201373
3859 [ECO:0000348]
3860 ##Evidence-Data-END##
3861 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
3862 1-921 CR523170.1 1-921
3863 922-928 BU307818.1 715-721
3864 FEATURES Location/Qualifiers
3865 source 1..928
3866 /organism="Gallus gallus"
3867 /mol_type="mRNA"
3868 /db_xref="taxon:9031"
3869 /chromosome="4"
3870 /map="4"
3871 /breed="Leghorn"
3872 gene 1..928
3873 /gene="SMIM20"
3874 /gene_synonym="C4H4ORF52; C4orf52; phoenixin"
3875 /note="small integral membrane protein 20"
3876 /db_xref="CGNC:55214"
3877 /db_xref="GeneID:769392"
3878 CDS 217..420
3879 /gene="SMIM20"
3880 /gene_synonym="C4H4ORF52; C4orf52; phoenixin"
3881 /codon_start=1
3882 /product="small integral membrane protein 20"
3883 /protein_id="NP_001138902.1"
3884 /db_xref="CGNC:55214"
3885 /db_xref="GeneID:769392"
3886 /translation="MARLFRTLVIFGGFAAVVGAAFYPIYFRPLLLPEEYKREQSINR
3887 AGIVQENIQPPGLKVWSDPFGRK"
3888 ORIGIN
3889 1 gggccggggc ggcatccggt cgcggggggg ccgagcagcg tcggagcgac agagcgctgg
3890 61 cgctcggcag gaagcgtccg ccccagcgcc gtcgctgctt ctgccgagct cggcggcggc
3891 121 acgccgccct ccccgctccg cccgccgggc cccgtctcgc ccggaagcgg cggccgcgga
3892 181 gcttccgtcc cggacgcggg gcgtccctcc gccgccatgg ccaggctgtt ccgcacgctc
3893 241 gtcatcttcg gcggcttcgc ggccgtggtg ggggccgcct tctaccccat ctacttccgg
3894 301 ccgctgctgc tgcccgagga gtacaagaga gaacagtcaa taaaccgagc tggtattgtt
3895 361 caagagaata tccagcctcc agggttaaaa gtgtggtctg atccatttgg aagaaagtaa
3896 421 tgttgccagc gtggtgcatt tcaaggtaga actgaagatg aacttcaatt atttcttcgt
3897 481 acactgaagt atgcctttgg gcgtcgctgg agaagatttc tgattatgct gtgtgggcat
3898 541 atgaggagca ataaatgcta ctggttggaa agccaagagg aggaaacatc ccagttttgg
3899 601 cagggtgctg tggcacaatg gacagactgc tagagaggtg actgtttctt gtgttaagaa
3900 661 gtaaaatatt tacttccttg agaaaaagga agaagaatta tttttgtggt taatctgtaa
3901 721 acatttggag aacaaattat gaatagacta aattatgcag accactgcag tttcctccct
3902 781 agtttgaaaa ttactttctg tggtttaatt gtgaaaacat gatagaagtt tatactaaga
3903 841 gagactggtg aagatttgct ctctcttagg cagaatataa catggtgagt gagaatttgt
3904 901 gcattaaaat ttcttccatt caaatcaa
3905 //
3906
3907 LOCUS NM_001110060 714 bp mRNA linear VRT 11-JAN-2017
3908 DEFINITION Gallus gallus ras-related protein Rab-23 (RAB23), mRNA.
3909 ACCESSION NM_001110060 XM_419896
3910 VERSION NM_001110060.1
3911 KEYWORDS RefSeq.
3912 SOURCE Gallus gallus (chicken)
3913 ORGANISM Gallus gallus
3914 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3915 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3916 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3917 Phasianidae; Phasianinae; Gallus.
3918 REFERENCE 1 (bases 1 to 714)
3919 AUTHORS Li N, Volff JN and Wizenmann A.
3920 TITLE Rab23 GTPase is expressed asymmetrically in Hensen's node and plays
3921 a role in the dorsoventral patterning of the chick neural tube
3922 JOURNAL Dev. Dyn. 236 (11), 2993-3006 (2007)
3923 PUBMED 17937392
3924 REMARK GeneRIF: Rab23 plays an important role in patterning the
3925 dorso-ventral axis by dorsalizing the neural tube
3926 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
3927 NCBI review. The reference sequence was derived from EU176872.1.
3928 On Oct 23, 2007 this sequence version replaced gi:118088838.
3929
3930 ##Evidence-Data-START##
3931 Transcript exon combination :: EU176872.1, BU404031.1 [ECO:0000332]
3932 RNAseq introns :: single sample supports all introns
3933 SAMEA2201361, SAMEA2201363
3934 [ECO:0000348]
3935 ##Evidence-Data-END##
3936 FEATURES Location/Qualifiers
3937 source 1..714
3938 /organism="Gallus gallus"
3939 /mol_type="mRNA"
3940 /db_xref="taxon:9031"
3941 /chromosome="3"
3942 /map="3"
3943 gene 1..714
3944 /gene="RAB23"
3945 /note="ras-related protein Rab-23"
3946 /db_xref="CGNC:12171"
3947 /db_xref="GeneID:421879"
3948 CDS 1..714
3949 /gene="RAB23"
3950 /note="RAB23, member RAS oncogene family"
3951 /codon_start=1
3952 /product="ras-related protein Rab-23"
3953 /protein_id="NP_001103530.1"
3954 /db_xref="CGNC:12171"
3955 /db_xref="GeneID:421879"
3956 /translation="MLEEDMEVAIKVVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV
3957 DFLERQIQVNDEEVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFKAIPT
3958 WKEKVTTEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRASVKEDLNVTE
3959 VFKYLADKYLQRLKQQTAEEPELVHTSSNKIGVFNTAIGSHPNQNSNTLNGGDVINLR
3960 PNKQRTKKSRSLFSNCSIP"
3961 ORIGIN
3962 1 atgttggaag aagacatgga ggtggccatc aaggtggtag tggtaggaaa tggagctgtt
3963 61 gggaagtcca gtatgattca gcgatactgc aaggggatct ttacaaaaga ctacaagaag
3964 121 actattggtg tagatttcct ggaaagacaa atccaagtta atgatgaaga agtcaggcta
3965 181 atgttatggg acactgcagg tcaagaggaa tttgatgcga taactaaggc ctactacaga
3966 241 ggagcccagg cttgtgttct tgtgttttct acaactgaca gagagtcctt caaagcaatc
3967 301 cctacctgga aggaaaaagt gacgactgaa gttggagaca ttcccacagt tcttgtgcag
3968 361 aataagatcg atcttttgga tgactcttgt ataaagaatg aagaggcaga agcactggca
3969 421 aaaaagctga aattaaggtt ctaccgagca tctgtgaagg aggacctcaa cgtcaccgaa
3970 481 gtttttaagt atttggctga taaatatctt caaaggctca agcagcaaac ggctgaagaa
3971 541 ccagaactag tacatacaag cagtaacaag attggtgttt tcaatacagc cattggaagt
3972 601 caccccaacc agaattccaa cactcttaac ggtggagacg tcatcaacct cagaccaaac
3973 661 aaacagagaa ccaagaaaag cagaagtctt tttagcaact gcagcatacc ttag
3974 //
3975
3976 LOCUS NM_001044640 774 bp mRNA linear VRT 11-JAN-2017
3977 DEFINITION Gallus gallus ras-related protein Rab-6A (RAB6A), mRNA.
3978 ACCESSION NM_001044640 XM_417254
3979 VERSION NM_001044640.1
3980 KEYWORDS RefSeq.
3981 SOURCE Gallus gallus (chicken)
3982 ORGANISM Gallus gallus
3983 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
3984 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
3985 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
3986 Phasianidae; Phasianinae; Gallus.
3987 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
3988 NCBI review. The reference sequence was derived from DQ470138.1.
3989 On Aug 29, 2006 this sequence version replaced gi:50731390.
3990
3991 ##Evidence-Data-START##
3992 Transcript exon combination :: DQ470138.1, CR390639.1 [ECO:0000332]
3993 RNAseq introns :: single sample supports all introns
3994 SAMEA2201368, SAMEA2201377
3995 [ECO:0000348]
3996 ##Evidence-Data-END##
3997 FEATURES Location/Qualifiers
3998 source 1..774
3999 /organism="Gallus gallus"
4000 /mol_type="mRNA"
4001 /db_xref="taxon:9031"
4002 /chromosome="1"
4003 /map="1"
4004 gene 1..774
4005 /gene="RAB6A"
4006 /note="ras-related protein Rab-6A"
4007 /db_xref="CGNC:50908"
4008 /db_xref="GeneID:419063"
4009 CDS 16..642
4010 /gene="RAB6A"
4011 /note="RAB6A, member RAS oncogene family"
4012 /codon_start=1
4013 /product="ras-related protein Rab-6A"
4014 /protein_id="NP_001038105.1"
4015 /db_xref="CGNC:50908"
4016 /db_xref="GeneID:419063"
4017 /translation="MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA
4018 TIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ
4019 QTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG
4020 YNVKQLFRRVAAALPGMESTQDKSREDMIDIKLEKPQEQPVSEGGCSC"
4021 misc_feature 19..21
4022 /gene="RAB6A"
4023 /experiment="experimental evidence, no additional details
4024 recorded"
4025 /note="N-acetylserine. {ECO:0000250}; propagated from
4026 UniProtKB/Swiss-Prot (Q1KME6.3); acetylation site"
4027 misc_feature 139..165
4028 /gene="RAB6A"
4029 /experiment="experimental evidence, no additional details
4030 recorded"
4031 /note="propagated from UniProtKB/Swiss-Prot (Q1KME6.3);
4032 Region: Effector region. {ECO:0000250}"
4033 misc_feature 637..639
4034 /gene="RAB6A"
4035 /experiment="experimental evidence, no additional details
4036 recorded"
4037 /note="Cysteine methyl ester. {ECO:0000250}; propagated
4038 from UniProtKB/Swiss-Prot (Q1KME6.3); methylation site"
4039 ORIGIN
4040 1 tcctctagtt ccacaatgtc ggcgggcggg gacttcggca acccgctgcg gaaattcaag
4041 61 ctggtgttcc tgggcgagca gagcgtgggg aagacttcct tgatcaccag gttcatgtat
4042 121 gacagctttg acaacaccta ccaggcaaca attggcattg acttcttatc aaaaaccatg
4043 181 tatttggagg atcgaacaat caggttgcag ctgtgggata ctgcgggtca ggaacgtttc
4044 241 cgtagcctca ttcccagtta catccgtgac tctgctgctg ctgtagtagt ttacgatatc
4045 301 acaaatgtca actcgttcca gcaaacaaca aaatggatcg acgatgtcag aacggaacgg
4046 361 ggcagcgatg tcatcattat gctggtggga aataaaacag atctagcaga taagaggcaa
4047 421 gtgtccattg aggaaggaga aagaaaagcc aaagagctga atgtaatgtt catcgaaact
4048 481 agtgcaaaag caggatacaa tgtaaaacag cttttccgac gcgtggcagc tgccttgcct
4049 541 ggaatggaaa gcacacaaga caaaagtaga gaagacatga ttgacatcaa actggaaaag
4050 601 cctcaagagc agcctgtcag tgaaggaggc tgctcctgct aataccacgt ggcttctgac
4051 661 ttcctccaga acatcactgc tttccctccc tttactcttc attgactgca gtgtgaatat
4052 721 tggcttgaac cttccccttt cagtaataac gtattgcagt tcatcatcgc tggc
4053 //
4054
4055 LOCUS NM_001030706 1661 bp mRNA linear VRT 12-JAN-2017
4056 DEFINITION Gallus gallus proteasome 26S subunit, non-ATPase 12 (PSMD12), mRNA.
4057 ACCESSION NM_001030706 XM_415677
4058 VERSION NM_001030706.1
4059 KEYWORDS RefSeq.
4060 SOURCE Gallus gallus (chicken)
4061 ORGANISM Gallus gallus
4062 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4063 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4064 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4065 Phasianidae; Phasianinae; Gallus.
4066 REFERENCE 1 (bases 1 to 1661)
4067 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4068 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4069 P, Hayashizaki Y and Buerstedde JM.
4070 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4071 gene function analysis
4072 JOURNAL Genome Biol. 6 (1), R6 (2005)
4073 PUBMED 15642098
4074 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4075 NCBI review. The reference sequence was derived from AJ720947.1.
4076 On Aug 8, 2005 this sequence version replaced gi:50757850.
4077
4078 ##Evidence-Data-START##
4079 Transcript exon combination :: AJ720947.1 [ECO:0000332]
4080 RNAseq introns :: single sample supports all introns
4081 SAMEA2201357, SAMEA2201358
4082 [ECO:0000348]
4083 ##Evidence-Data-END##
4084 FEATURES Location/Qualifiers
4085 source 1..1661
4086 /organism="Gallus gallus"
4087 /mol_type="mRNA"
4088 /db_xref="taxon:9031"
4089 /chromosome="18"
4090 /map="18"
4091 /breed="Leghorn"
4092 gene 1..1661
4093 /gene="PSMD12"
4094 /note="proteasome 26S subunit, non-ATPase 12"
4095 /db_xref="CGNC:2706"
4096 /db_xref="GeneID:417425"
4097 CDS 43..1413
4098 /gene="PSMD12"
4099 /note="proteasome (prosome, macropain) 26S subunit,
4100 non-ATPase, 12"
4101 /codon_start=1
4102 /product="26S proteasome non-ATPase regulatory subunit 12"
4103 /protein_id="NP_001025877.1"
4104 /db_xref="CGNC:2706"
4105 /db_xref="GeneID:417425"
4106 /translation="MAEGGAERADGRIVKMEVDYSATVDQRLPECGRLAQEGRLQEVI
4107 ENLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKDWDALNENIILLSKRRSQLKQAVA
4108 KMVQQCCTYVEDITDLPVKLRLIDTLRTVTEGKIYVEIERARLTKTLATIKEQNGEVK
4109 EAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEEN
4110 TEKLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVIL
4111 SPYDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWTALVEEYGKELREGSLD
4112 SPATDVFGCTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEEF
4113 LSNLVVNKTIFAKVDRLAGIINFQRPKGPNNILNDWSHKLNSLMALVNKTTHLIAKEE
4114 MIHNLQ"
4115 ORIGIN
4116 1 ctggtgtgtg ttcgcggggg gacgcggagc ggagccgggg ccatggcgga gggcggcgcg
4117 61 gagcgggccg atggccgcat cgtgaaaatg gaggtggatt atagcgcgac ggtggaccag
4118 121 cggctgcccg agtgcgggcg actggcgcag gaggggagat tgcaagaagt aattgaaaac
4119 181 cttctctcct tggaaaaaca aacgcgaacg gcttctgaca tggtttccac atcgcgtatc
4120 241 ttagtggcta tagtgaagat gtgttatgaa gctaaagact gggatgctct gaatgaaaat
4121 301 attattcttc tgtcaaagag aagaagtcag ttaaaacagg cagttgctaa aatggtccag
4122 361 cagtgctgca cttacgttga agacatcaca gacttaccag tgaaactgcg cttaattgac
4123 421 acgttgcgta cagttacaga aggaaaaata tatgtggaaa tcgaacgtgc tcgcctgaca
4124 481 aagacacttg caacaataaa agaacagaat ggtgaagtga aagaggctgc ctctattctg
4125 541 caagaattgc aggtggaaac ttacggttca atggaaaaga aagaacgtgt agaatttatc
4126 601 cttgagcaga tgaggctctg tctagctgta aaagactaca ttcggactca aattatcagc
4127 661 aaaaaaatta atacaaaatt ttttcaagaa gaaaacacag aaaaactaaa attgaaatac
4128 721 tacaacctaa tgatccagct ggatcaacac gaaggctcct acctctccat ttgtaagcac
4129 781 tacagagcca tttatgatac tccatgtatt caagctgaga gtgaaaagtg gcagcaggca
4130 841 ctgaagagcg ttgttcttta tgttattctt tcaccttatg acaacgaaca atctgatttg
4131 901 gtgcacagaa ttagtagtga caaaaagcta gaagaaatcc cgaagtataa agacctccta
4132 961 aaattattta ccaccatgga gttgatgcga tggactgccc tagttgaaga atatgggaaa
4133 1021 gaattgagag aagggtccct cgacagtcct gcaacagatg tttttggctg tacagaggaa
4134 1081 ggtgaaaaga gatggaaaga tttaaagaac agagttgtgg aacataatat tagaataatg
4135 1141 gctaaatatt ataccagaat tacaatgaag agaatggcac agctcctgga tctgtccgtt
4136 1201 gatgaatcgg aggagttcct gtctaaccta gtagttaaca agaccatctt tgctaaagta
4137 1261 gacaggctgg caggaattat caatttccag aggcctaagg gtccaaacaa tatactgaat
4138 1321 gactggtctc acaagctgaa ctcactaatg gccctagtta acaaaaccac acatctcatt
4139 1381 gccaaagagg agatgataca taacctacag taaggtgcct caataatctc agtgctttta
4140 1441 aaggaaggca ttaaatcttc ataatagaga ctattattac agtgtgtata tgtttttttt
4141 1501 tctccccatc agggcttcct ggtctaaaat ttagaacata attctgaaat tcctgttgac
4142 1561 agttgagttc ccttgattat tcattcagtt gttaaacatt tttgctacaa ttggtgaaag
4143 1621 aacataataa aactgtattg cctgtaaaaa aaaaaaaaaa a
4144 //
4145
4146 LOCUS NM_001030974 3714 bp mRNA linear VRT 11-JAN-2017
4147 DEFINITION Gallus gallus RNA binding motif protein 48 (RBM48), mRNA.
4148 ACCESSION NM_001030974 XM_418656
4149 VERSION NM_001030974.1
4150 KEYWORDS RefSeq.
4151 SOURCE Gallus gallus (chicken)
4152 ORGANISM Gallus gallus
4153 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4154 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4155 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4156 Phasianidae; Phasianinae; Gallus.
4157 REFERENCE 1 (bases 1 to 3714)
4158 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4159 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4160 P, Hayashizaki Y and Buerstedde JM.
4161 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4162 gene function analysis
4163 JOURNAL Genome Biol. 6 (1), R6 (2005)
4164 PUBMED 15642098
4165 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4166 NCBI review. The reference sequence was derived from AJ851572.1.
4167 On Aug 8, 2005 this sequence version replaced gi:50732482.
4168
4169 ##Evidence-Data-START##
4170 Transcript exon combination :: AJ851572.1 [ECO:0000332]
4171 RNAseq introns :: single sample supports all introns
4172 SAMEA2201357, SAMEA2201358
4173 [ECO:0000348]
4174 ##Evidence-Data-END##
4175 FEATURES Location/Qualifiers
4176 source 1..3714
4177 /organism="Gallus gallus"
4178 /mol_type="mRNA"
4179 /db_xref="taxon:9031"
4180 /chromosome="2"
4181 /map="2"
4182 /breed="Leghorn"
4183 gene 1..3714
4184 /gene="RBM48"
4185 /gene_synonym="C2H7ORF64; C7orf64; HSPC304"
4186 /note="RNA binding motif protein 48"
4187 /db_xref="CGNC:51284"
4188 /db_xref="GeneID:420555"
4189 CDS 38..1090
4190 /gene="RBM48"
4191 /gene_synonym="C2H7ORF64; C7orf64; HSPC304"
4192 /note="UPF0712 protein C7orf64"
4193 /codon_start=1
4194 /product="RNA-binding protein 48"
4195 /protein_id="NP_001026145.1"
4196 /db_xref="CGNC:51284"
4197 /db_xref="GeneID:420555"
4198 /translation="MAAGGGGALGEACRHHQQLGACGSRAKYREGRRPRAVKVYTINL
4199 ESRYLLIQGVPALGVMKELVEQFALYGAIEEYHALDEYPAEQFTEVYLIKFQNLQCAR
4200 VAKKKMDERSFFGSLLHVCYAPEFETVQETREKLQDRRKYIAKATNQRDCFLLKKTEG
4201 PRKTKSDCQWSTSGSYAASHWDPSCFPDSHGVSQNTEYPSGNHSQNLLTFPHCDNHSA
4202 ETSGNFGQSTSLKMHPGGCAAPVPLIQQRTGPADNGTDRFMPRTTQLQERKRKREEGN
4203 KSALIETNVNSTDIIIGPQLPEIPKVDMDDDSLNTSATLIRNKLKEVAESVSSTSVEK
4204 PGSSATKPLVKQRRRI"
4205 ORIGIN
4206 1 ggagctgcct gcgcggggag cggcggcggc cgggaagatg gcggcgggcg gtggcggcgc
4207 61 gctgggcgag gcgtgcagac accaccagca gctgggcgcc tgcgggtcgc gcgccaagta
4208 121 ccgcgagggg cggcggccca gggccgtcaa ggtgtatacc atcaacttgg aatctcgtta
4209 181 tttactgatc cagggggttc ctgcattagg tgtcatgaag gaattagtgg agcagtttgc
4210 241 cttatacggt gccatagaag agtaccacgc cctggatgaa tatcccgcag agcagttcac
4211 301 tgaagtttat ctcataaagt tccagaatct ccaatgtgcg agggtggcca agaaaaaaat
4212 361 ggatgaacgc agtttctttg ggagtttgct gcacgtgtgc tatgctccag aattcgaaac
4213 421 agtccaagaa accagggaga agctgcagga cagaaggaag tatatagcaa aagcaacaaa
4214 481 tcagagagac tgcttcctgt tgaagaaaac agaggggcct aggaagacca agtctgactg
4215 541 tcagtggagt acatcaggat cgtatgcagc tagtcactgg gatccatcct gctttccaga
4216 601 ttctcatggg gtgtcccaaa acacggaata tccttctggc aatcacagtc agaacctgtt
4217 661 gacttttccc cactgtgaca accacagtgc tgaaacttct gggaactttg gtcaaagcac
4218 721 atccctgaag atgcatccag gaggatgtgc tgcaccggtg cctttaattc agcaaagaac
4219 781 aggtccagct gataatggaa ctgacaggtt tatgcctcgt acaactcaac tgcaggaacg
4220 841 taagaggaag agagaagagg gtaacaaatc tgccctcatt gaaacaaatg tgaacagtac
4221 901 tgacatcatt attggtccac agctaccaga aatacctaaa gtggatatgg atgatgattc
4222 961 actgaatact tcagctacac tgattcgaaa taaactgaaa gaggtagcag agtcagtttc
4223 1021 aagtacatct gtggaaaagc caggcagcag tgccaccaag ccactagtaa agcagagaag
4224 1081 aagaatatag atactgctgg cagcatcctt ctgcagctct ttatagagga tataattaaa
4225 1141 aatacttaat gttgtttttt aaattaaaaa gaagtgtttt atattgcatt tccaagcaat
4226 1201 tccttgttaa aaactgtacc aggataaact aaaccagtat aatactgtag caattccttg
4227 1261 tcctgtgtat ttaaagagct gcaattaggt aaagtaataa aagtaaattc tatttattgc
4228 1321 atagctttta cagtaaagga atattgaaac ttaagatatc aattgttttg tgttgctttt
4229 1381 attcctaatg tcctctgagg aatgatgaag cattcttaga gcagtgttcc acttggagtt
4230 1441 acagttcacg cttttcctgg aaggtcctcc tttcaaatgc caaactgctc tgtgaaggag
4231 1501 aggaaaataa caagtttatt ctcagttaac tggaacgtct acatttagtt agttagaaaa
4232 1561 agagggcaaa ctggaatgtg taagtagcga aacaatgctt tgtagcacag aaaagctaaa
4233 1621 tccagtagca ttactgtcat caagaaactg atcacagttg taactgcact gggaaagctt
4234 1681 atgaattctg agcttccttc atttggtgct catagctgaa attattgatt tttgggattt
4235 1741 ggaagaatgt ataaatagag ttctttttaa gaatggaact agagacctag taaaaaggca
4236 1801 ccagttgggt agggtgcaga acagaataca cagataatgg aatcaagaaa ctggctcagc
4237 1861 ttcctacctg ttgccacaac tggctggaat tgtatccctg atttaccaca aactctgaca
4238 1921 aaaaacaaat catttttctg tgctgatcag tgaacgtaaa tgctgttaag aaactcttca
4239 1981 gaactttccc ttcatggaga aaaatagaag tactggccct gggtctctga aagcccactg
4240 2041 acagcctttt aaaatgtgac atcttgaaaa cagctgctat tcgggtgacc tgagataatc
4241 2101 cagactgcaa ccacagctat gagactcctt ccttctgtct tccagcctac caggaaggtg
4242 2161 agctggcatg aaatgtaggt tctgagcaaa taaatgcttg ccttgttttc aacaatctta
4243 2221 tggaactttt ctgtttctat gcattattgc atatatgtca gaatcttgtt tttccatctc
4244 2281 tatgagggca agaccgctgg cacttaaaaa tgaaatgcag ttcaaagagt ataatgatgg
4245 2341 atcagtgaaa aaattactat tacaaaggag acatctacac gtcagtttga tttaacgcta
4246 2401 aggaaattac tgcctcccaa atgaccatct ttcaggaaaa aaacctctct gaatcggatg
4247 2461 tactgctaat aaataaggct cagctggatg gaatttaaca acagtagcct aatacagtta
4248 2521 ttgtgagatg acacttctaa agtattttct ctgaaggtta ccggtctctc ccagaagaat
4249 2581 ggcagtggag ctggtggcac tgaagaaaga agaacaaaca ctgctttcct ggtgaagttt
4250 2641 cagataaact ctgcaagaga ctgatctcat tttttttagc cagggaggat gcttactgag
4251 2701 aatcatttat tgtattgctg ccccagcaca gacaagtggc acgacagtat gtttttatgc
4252 2761 tccctggtat cagtgtatga ctgtatcagg aaaggtgtac tgtgaaaggc agacatgaac
4253 2821 tcagaacatt tgtatcccac aactggaaca ccagcggaat tcagcaaact tcatacgaag
4254 2881 acagttaata ccataatatg aatgtatagt taaaaacagt acggagatag gtttttttaa
4255 2941 ctgaaggctg atgtaccttt acgtctggca aacatggtcc aaaggcttcc aagagaagat
4256 3001 tttcattttt gacagcttct tcaaagtccg caaaagaaag tttgccatca tggtcatagt
4257 3061 cctacacaag gagaagtctt tagcaaagac ctgcagcaat tgcctgttta tttaacagat
4258 3121 atttcattca tgtgcattta ttgattgatt gatagatttt acgcaaaaat cttccttggg
4259 3181 ccattagtct ccaaggtaag tagagtatgc ctctacttac agcataaaag atggaacaag
4260 3241 ctcaactatc tagtctagct ttgctaacag aattcctgat aaggcaaaat gttaacgtgg
4261 3301 gaagagctcg gactgagaac cctggggaca aatctcaaca atggctgcac aaggataaaa
4262 3361 gtagaagaaa atgttcagat gcattctgtc tatgtattta cattgtgagt atacctacat
4263 3421 ccatgaatta ctttatgcga gtggttttat tgtagacata cttctgccct gtctttttca
4264 3481 tgtgtagaca tagtagcaca tggagtatgc cactgccagc ctgcttctgg ctgtggaatg
4265 3541 ttcctctgta ggtggaaaag aagcatcctt gtgtttttag tatttctgta atttgaaaac
4266 3601 ctcctgtttc tacaagcata gcagcttaga gcaacaaatg ctacagtaag cacttcttta
4267 3661 atccttataa aggcattaag taaaagtaat aatttaagaa aaaaaaaaaa aaaa
4268 //
4269
4270 LOCUS NM_001031172 2851 bp mRNA linear VRT 11-JAN-2017
4271 DEFINITION Gallus gallus VPS51, GARP complex subunit (VPS51), mRNA.
4272 ACCESSION NM_001031172 XM_420916
4273 VERSION NM_001031172.1
4274 KEYWORDS RefSeq.
4275 SOURCE Gallus gallus (chicken)
4276 ORGANISM Gallus gallus
4277 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4278 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4279 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4280 Phasianidae; Phasianinae; Gallus.
4281 REFERENCE 1 (bases 1 to 2851)
4282 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4283 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4284 P, Hayashizaki Y and Buerstedde JM.
4285 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4286 gene function analysis
4287 JOURNAL Genome Biol. 6 (1), R6 (2005)
4288 PUBMED 15642098
4289 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4290 NCBI review. The reference sequence was derived from AJ720609.1.
4291 On Aug 8, 2005 this sequence version replaced gi:50747587.
4292
4293 ##Evidence-Data-START##
4294 Transcript exon combination :: AJ720609.1 [ECO:0000332]
4295 RNAseq introns :: mixed/partial sample support
4296 SAMEA2201357, SAMEA2201358
4297 [ECO:0000350]
4298 ##Evidence-Data-END##
4299 FEATURES Location/Qualifiers
4300 source 1..2851
4301 /organism="Gallus gallus"
4302 /mol_type="mRNA"
4303 /db_xref="taxon:9031"
4304 /chromosome="5"
4305 /map="5"
4306 /breed="Leghorn"
4307 gene 1..2851
4308 /gene="VPS51"
4309 /gene_synonym="ANG2; ANG3; C11orf2; C11orf3; C5H11ORF2;
4310 FFR"
4311 /note="VPS51, GARP complex subunit"
4312 /db_xref="CGNC:3056"
4313 /db_xref="GeneID:422984"
4314 CDS 33..2396
4315 /gene="VPS51"
4316 /gene_synonym="ANG2; ANG3; C11orf2; C11orf3; C5H11ORF2;
4317 FFR"
4318 /note="protein fat-free homolog; another new gene 2
4319 protein; vacuolar protein sorting 51 homolog; VPS51
4320 vacuolar protein sorting 51 homolog"
4321 /codon_start=1
4322 /product="vacuolar protein sorting-associated protein 51
4323 homolog"
4324 /protein_id="NP_001026343.1"
4325 /db_xref="CGNC:3056"
4326 /db_xref="GeneID:422984"
4327 /translation="MAEVEAAGSGTETGGGSESGNATGSGSGWRRPHGPLQRYYGPSA
4328 AEAAEATPDPADINGPHFDPEVFLTKVRSECRLGELLSREATLGREIRALDSDMQTLL
4329 YENYNKFISATDTIRKMKVDFRRMEAEMDDLASNMAAISASSARVSAALQDRHRRGAQ
4330 LAGVQALLRKLQSLVEVPGRLRRWAAPGADPARALHCYARARAVLRHYRHLPSFRAIE
4331 DESHSIMAELAQRLRARLRDDTLDPKELTECVEMLLQLEEPPEELCEEFLSQAGARLE
4332 AELAALEAELPPSDPSGTASTPPPASDILDFVDRGSSAFVSNLCLLAASYRSLFEGRP
4333 GSGDGRLEAFASTLTTRYFELLERRLALERGLGDTSLLVRALDRFHRRLRALLELLPA
4334 AGAEAGAALVARAARERVARYLRALQTFFLGCLGDVRQALAAPRPPGKDGPGLPDLLA
4335 TLSSSVLGQLKAVLAYVQLFTARDVAFASLPYFKGEFCVEAVREGLVVAFVRWLCRTA
4336 RGFADSPAERGAPAAPPALLLLLARLCLDYEATTISYILTLTDEQFPPEDTGPAVTPG
4337 PALCAEARGAAQRLLDHYVQVQGAAVAQMLRKSVETRDWLGTVEPRNVRAVMKRVVED
4338 ITAIDVQVGQLFEEGVRRAQSSDSSRRAFSVYSSSRAPGRYAPSYTPSAPMDTHLLSN
4339 IQKLFSERIDIFSPVEFNKVSVLTGIIKISLKTLLECVRLRTLGRFGLQQVQVDGHYL
4340 QLYLWRFAADERVVQGLLDEVAASAAHRCLDPVPMEHSVVELICERG"
4341 ORIGIN
4342 1 aagctgtcag ctggaccgga agtgtcggcg tgatggcgga ggtggaagcg gcggggtcgg
4343 61 ggaccgagac tggcggcggc tccgagtctg ggaacgcaac agggagcggg agtgggtggc
4344 121 ggcgacccca cggtccgctc cagcggtatt atggaccgtc tgcggccgaa gcggcagagg
4345 181 caaccccgga ccctgctgat atcaacgggc cccacttcga cccggaagtt tttctcacca
4346 241 aggtgcgcag tgagtgtcgc ctgggggagt tgttgtcccg tgaagctacg ctggggcggg
4347 301 agatccgtgc tctcgacagt gatatgcaaa cgctgctcta tgagaactac aacaagttca
4348 361 tttctgccac agacactatc cgaaagatga aggttgactt ccggcgcatg gaggcagaga
4349 421 tggatgattt ggcctccaac atggcagcca tcagtgcctc cagtgcccgt gtcagtgctg
4350 481 cgctgcagga ccggcaccgc cgcggtgctc agctggctgg ggtgcaggcg ctgctgcgga
4351 541 aactgcaatc ccttgtggag gtgccagggc ggctgcggcg gtgggcagca ccaggagctg
4352 601 atcctgcacg ggccctgcac tgctacgccc gtgcccgtgc tgtgctgcgc cactaccgcc
4353 661 acctgccctc cttccgtgcc atcgaggatg agagccactc catcatggct gagctggccc
4354 721 agcgcctccg tgcacgcctc cgggatgaca ccttggaccc gaaggaactc actgagtgtg
4355 781 tggagatgct cctgcagctg gaggaaccac ccgaggagct gtgtgaggag ttcctgagcc
4356 841 aggctggtgc ccgccttgaa gccgagctgg cggcgctgga ggctgagctg cccccatctg
4357 901 acccctctgg cactgcttcc acgccacctc ctgcctccga catcctcgac tttgttgacc
4358 961 gcggcagctc agccttcgtg agcaacctgt gcctccttgc ggcctcgtac cgcagcctct
4359 1021 ttgaggggcg tcccgggtcc ggggatggcc gcctggaggc ctttgcctcc accctcacca
4360 1081 cccgctactt tgagctgctg gagcgacgcc tggccctgga gcggggtctg ggcgacacgt
4361 1141 cactgttggt gcgggcactc gaccgttttc accgccgcct ccgtgctctc cttgagctgc
4362 1201 tgcctgcggc tggggctgaa gcaggtgccg cactggtggc ccgagcagca cgtgaacggg
4363 1261 tggcccgcta cctgcgggcg ctgcagacct tctttctggg gtgcctgggt gatgtgcgcc
4364 1321 aggcactggc tgcaccccgt cctcctggca aggatggccc tggactgcct gacctcttgg
4365 1381 ccacgctctc ctcctccgtt cttggtcagc tcaaggctgt cctggcctac gtgcagctct
4366 1441 tcactgccag ggatgttgcc tttgccagct tgccctactt caagggggag ttctgtgtcg
4367 1501 aggcggtgcg tgaaggactg gtggtggcct tcgtgcgctg gctctgccgt actgctcggg
4368 1561 gctttgctga cagcccagct gagcgaggtg cccctgcagc acccccagca ctgctgctgc
4369 1621 tccttgcccg tctctgcctt gactacgaag ccaccaccat cagctacatc ctcactctta
4370 1681 ctgatgagca gttccctcct gaggacacag gaccagcggt gacgccaggg ccagcactgt
4371 1741 gtgctgaggc acggggagcg gcgcagcggc tgctcgacca ctacgtacag gtgcagggcg
4372 1801 ctgcggtggc acagatgctg cggaagagcg tggagacacg ggactggttg ggcaccgtgg
4373 1861 agccccgcaa tgtccgtgct gtcatgaagc gtgtggttga ggacatcact gccatcgatg
4374 1921 tccaggtggg gcagctcttt gaggagggag tgcggcgggc gcagagcagc gactcgagcc
4375 1981 gacgtgcctt ctctgtgtac agcagctcac gggcaccggg acgctatgcc cctagctaca
4376 2041 ctcccagtgc ccccatggac acccacctgc tcagcaacat ccagaagctc ttctccgaac
4377 2101 gcattgacat cttcagccct gttgagttca acaaggtgtc agtgctgaca gggatcatca
4378 2161 agatcagcct gaagacactg ctggagtgtg tgcggctgcg gacgctgggg cgctttgggc
4379 2221 tgcagcaggt gcaggtggac ggccactacc tacagctcta cctctggcgc tttgctgctg
4380 2281 acgagcgtgt ggtgcagggg ctgctggatg aggtggctgc cagtgctgcc caccgctgcc
4381 2341 ttgaccctgt ccctatggag cacagcgtcg tcgagctcat ctgtgagcgt gggtaggacc
4382 2401 tgagagcacc caggaaacac ctggggacat gggttgatgc acgggtgagg gggcacagga
4383 2461 gtcatctatg tgactgtaga gcacagcaga gctgggggca tatctgggag gggaatgtgt
4384 2521 cttggatcct gccacaagga caggctttta cctcgtgtat ttagggacac cccatgtttt
4385 2581 cccacacatg cagtgacgta tacagacata ccacaccctc acacctgtaa ggtcaccctg
4386 2641 tgttcccccc ccgcagcccc agtaacaccc cacagtctct cccctcccca gtgatgccaa
4387 2701 cccgatgttg tccctgcagc cctaacgaca tgccacatca ttccacttcc ttggtgacat
4388 2761 ccccctacac gtgggacatg ctgcacgtag cccatgtgtc acagttgagg acaataaata
4389 2821 aaatgcatgc aagttaaaaa aaaaaaaaaa a
4390 //
4391
4392 LOCUS NM_001031536 4463 bp mRNA linear VRT 11-JAN-2017
4393 DEFINITION Gallus gallus trafficking protein particle complex 11 (TRAPPC11),
4394 mRNA.
4395 ACCESSION NM_001031536 XM_426304
4396 VERSION NM_001031536.1
4397 KEYWORDS RefSeq.
4398 SOURCE Gallus gallus (chicken)
4399 ORGANISM Gallus gallus
4400 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4401 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4402 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4403 Phasianidae; Phasianinae; Gallus.
4404 REFERENCE 1 (bases 1 to 4463)
4405 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4406 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4407 P, Hayashizaki Y and Buerstedde JM.
4408 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4409 gene function analysis
4410 JOURNAL Genome Biol. 6 (1), R6 (2005)
4411 PUBMED 15642098
4412 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4413 NCBI review. The reference sequence was derived from AJ720895.1.
4414 On Aug 8, 2005 this sequence version replaced gi:50746836.
4415
4416 ##Evidence-Data-START##
4417 Transcript exon combination :: AJ720895.1 [ECO:0000332]
4418 RNAseq introns :: mixed/partial sample support
4419 SAMEA2201357, SAMEA2201358
4420 [ECO:0000350]
4421 ##Evidence-Data-END##
4422 FEATURES Location/Qualifiers
4423 source 1..4463
4424 /organism="Gallus gallus"
4425 /mol_type="mRNA"
4426 /db_xref="taxon:9031"
4427 /chromosome="4"
4428 /map="4"
4429 /breed="Leghorn"
4430 gene 1..4463
4431 /gene="TRAPPC11"
4432 /gene_synonym="C4H4ORF41; C4orf41; FOIGR; GRY; LGMD2S"
4433 /note="trafficking protein particle complex 11"
4434 /db_xref="CGNC:53450"
4435 /db_xref="GeneID:428748"
4436 CDS 99..3497
4437 /gene="TRAPPC11"
4438 /gene_synonym="C4H4ORF41; C4orf41; FOIGR; GRY; LGMD2S"
4439 /note="UPF0636 protein C4orf41; gryzun homolog; foie gras
4440 homolog"
4441 /codon_start=1
4442 /product="trafficking protein particle complex subunit 11"
4443 /protein_id="NP_001026707.1"
4444 /db_xref="CGNC:53450"
4445 /db_xref="GeneID:428748"
4446 /translation="MTPSQWDLPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
4447 RADRVPISFKVLPGDHEYPKCRTKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
4448 LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAA
4449 LCNACDLSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
4450 HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNMLEIKTMAGFINY
4451 KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELAFEHAAWMSKQFQAFGDLFDEAI
4452 KLGLTAIQTQNPGFYYQQAAYYAQERKQLASMLCNHDSSVVYPNPDPLETQTGVLDFY
4453 GQRPWRQGTLSFDLSDPEKEKMGILSLQLKERNVLHSELIITLLSNAVAQFKKYKCPR
4454 MKSHLMVQMGEEYYFAKDYAKALKLLDYVMCEYRSEGWWTLLTSILTTALKCSYLMAQ
4455 IKDYITYSLELLGRASTLKDDQKSRIEKNLIKVLMNESPDPEPDCDAAAVKASQKLWS
4456 DRVSLAGSNVFTIEVQDFIPFVQCKAKFLAPSFHVDVPVQFDIYLRADCPHPIRFSKL
4457 CISFNNQDYNQYCVVEEAYQKSDILEQSSQGTMCLVPGKTRKFTFKFVAKTEDVGKKI
4458 EITSVDLILGSESGRCVILNWRGGGGDAASSQEALQAARSFRRRPKLPDNEVHWDSLA
4459 IQASTMIISRVPNISVQLRHEPPALTNEMYCLVVTIESHEETVAKDVKLTAGLKPGQD
4460 ANLTQKTQVTLRGTDTCDDSFPALLPDIPVGDLQPGEKLEKPIYIRCGTVGARMFLVY
4461 VSYLINTTVEGKEILCKCHRDETVTIETVFPFDVAIKFVSTKLEHLDRVFADIPFLLM
4462 TDILSASPWPLTIVTSQLQLSASMTSVDQLESYVENVVLQTGESASECFCLRCPPVTN
4463 SGGVATGCYIISWKRSSPVESVPVVSTVITLPHVIVESIPLHVKADLPSFGRVRESLP
4464 VRYHLQNKTNLVQDVEVSMEPSDAFMFSGLKQIRLRILPGTQQEVLYNFYPLMAGYQQ
4465 LPSLHINLLRFPNFTNQLLRRFIPTHIFVKPQGRQADENSIAAA"
4466 ORIGIN
4467 1 cccgccccgc ctcccgtgat cgtcgctggc gccggggctg ctgggccccc agctgctgct
4468 61 tcggcctccc gcttcggccg ggggccgcgg ggagcaggat gactccgagc cagtgggact
4469 121 tgccggtgga gctatgctgc cggcctatgg ccttcgtcac cctcaccggc ctggacgtgg
4470 181 tgtacaacgc cgtgcaccgg gccgtgtggg atgccttctg cgccaaccgg agggccgacc
4471 241 gcgtccccat ctccttcaaa gtgctgcccg gcgaccacga gtaccccaag tgccggacga
4472 301 agaggacctc ctacgagtgg tatattccaa aagggatcct aaagacgggt tggatgaaca
4473 361 aacacctgaa tttagttcct gcacttgtgg tggtgttcta tgaactggac tgggatgagc
4474 421 cacagtggaa agaaaagcag tcggaatgtg ccactcgggt tgaaattgtc aggcaaagtt
4475 481 tgcaaggaag aaatacaaaa gttgccgtgg tcttaattca gaagaaaact ccattacctc
4476 541 caggggaaga tgttattgca tcagagaggg cagcagcttt atgtaatgct tgtgaccttt
4477 601 ctggaaaatc cctctttgtg cttccacaca ctgatcatct cgttggctat attataaggt
4478 661 tggaaaacgc attctatgag catgcccaga cttactatta tacagaaata cgaagagtca
4479 721 aatctcataa ggaattcttg aacaaaacca ctcaccagct tctgtttgtt agacaccagt
4480 781 tcaaaatagc attcttcagt gagctgaaac aggatacaca gaatgctctc aaaaattaca
4481 841 ggactgcata taatctcgta catgaattaa gggctcatga aacaaacatg ctggaaatca
4482 901 agaccatggc aggatttata aactacaaga tctgtcgcct ctgttttcaa cacaatactc
4483 961 cactggatgc aattgctcag tttaggaagc acatagactt atgcaagaaa aagataggaa
4484 1021 gtgctgaact ggcttttgag catgctgcct ggatgtctaa acagtttcag gcttttggtg
4485 1081 acttgtttga tgaagcgatt aaactgggct tgacagcaat tcaaactcag aatccaggtt
4486 1141 tctactacca gcaagctgcc tactatgctc aggagcggaa acaactagca agtatgcttt
4487 1201 gtaaccatga ttcctctgtg gtatatccca acccggatcc cttggaaaca cagactggag
4488 1261 tgcttgactt ctatgggcag agaccatggc ggcagggaac attaagcttt gatctttctg
4489 1321 atcctgaaaa ggagaagatg gggattttat ccctccagct gaaagagaga aatgtccttc
4490 1381 actcagagct aataattacc ctgttgagta atgctgttgc gcagttcaag aaatacaaat
4491 1441 gtccaagaat gaaaagtcat ttgatggttc aaatgggtga agaatattac tttgctaaag
4492 1501 attacgccaa agctttgaag ctgttggact acgttatgtg tgaatatcgc agtgaaggat
4493 1561 ggtggactct tctcacttcc atactgacga cagctctcaa gtgttcatat ctgatggccc
4494 1621 agataaagga ttatataacg tactctttag aattattggg tagagcatct actcttaaag
4495 1681 atgatcagaa atctcgaata gaaaaaaatc tgataaaagt tctaatgaat gagagccctg
4496 1741 atcctgaacc tgattgtgat gctgctgcag tgaaagcatc acagaagttg tggtctgatc
4497 1801 gtgtttcttt ggcaggcagt aatgttttta caatagaggt ccaagatttc ataccatttg
4498 1861 tgcaatgcaa agcaaaattc cttgctccaa gttttcatgt tgatgtccct gtgcagtttg
4499 1921 atatttactt aagagctgat tgtcctcatc ctatcaggtt ttctaagctc tgcatcagtt
4500 1981 tcaataatca ggattacaac caatactgtg tggtagaaga agcctatcaa aaaagtgata
4501 2041 tcctagaaca gtcgtcacaa ggaacgatgt gcttagtccc tggtaaaaca cggaagttca
4502 2101 cgttcaaatt cgttgcaaaa actgaagatg taggaaagaa gattgagatc acctctgtgg
4503 2161 atttgatctt gggtagcgaa tctggccgat gtgtgattct gaattggcgt ggaggaggtg
4504 2221 gagatgctgc ttcgtctcaa gaagcactgc aggcagcacg ttccttcagg cggagaccca
4505 2281 agcttccgga taatgaagtt cattgggaca gtttggctat tcaagcaagc actatgatta
4506 2341 tttctagggt gccaaacatt tctgttcagc ttcgtcatga acctcctgcc ctgactaatg
4507 2401 aaatgtactg tttggttgtg actatcgagt cacatgagga gacagtggcc aaagatgtta
4508 2461 agcttactgc aggtttaaag ccagggcaag atgccaactt gactcagaaa actcaagtaa
4509 2521 ctcttcgagg aacagataca tgcgatgact cctttcccgc attgcttcct gatatccctg
4510 2581 taggagatct gcaaccaggg gaaaagctgg aaaaaccaat atacattcgt tgtggaacag
4511 2641 ttggtgcaag gatgtttctt gtctatgtct cttacttgat caacacgact gttgaaggga
4512 2701 aagaaatcct ctgcaaatgc caccgggatg aaactgtaac tatagaaaca gtatttcctt
4513 2761 ttgatgttgc catcaaattt gtttccacaa agctggagca cttggacaga gtttttgcag
4514 2821 atataccatt tttactgatg acagacatcc tgagtgcttc tccttggccc ctcactattg
4515 2881 taaccagcca gctacagctg tcagcttcca tgacctcggt agatcagctg gaatcttatg
4516 2941 tggaaaatgt tgttttacag acaggtgaga gtgccagtga gtgcttttgc ctgcgatgtc
4517 3001 ctccagttac taatagtggt ggagtggcaa ctggatgtta tatcatttcc tggaagagaa
4518 3061 gttcacctgt ggaaagtgta cctgttgtta gtacagtcat cactctgcca catgtgattg
4519 3121 tagagagcat tcccctccat gttaaagcag atctgccatc atttggtcga gttcgagaat
4520 3181 ccctccctgt cagatatcac ctgcaaaata agaccaattt agtccaggat gtagaggtgt
4521 3241 caatggaacc cagcgacgca ttcatgttct ctggccttaa gcagatccgg ttaagaatcc
4522 3301 ttcctggcac gcagcaggaa gtattatata acttctatcc tctgatggct ggatatcaac
4523 3361 agttaccatc tcttcatatt aacttgctgc gattcccaaa cttcactaat cagctgctca
4524 3421 gacgattcat acctacacac atctttgtga agcctcaggg tcgtcaagca gatgaaaact
4525 3481 caattgcagc tgcgtaactc caagacttgc acctctgcac ttaaagaaga tgggaagttg
4526 3541 cacagaatac ataatgtttg ctttggaaac atggctttga tcaaaccata agaattattt
4527 3601 gtttttaatt acatctctta acagaactaa tgtttaaaaa aaaaaaagtc tttcatagac
4528 3661 cctccttaag gaggaaacat ggggaaaagt tggtgcttta tgtaacagga acattatttt
4529 3721 gaaggtaacg ctgaatgtca aactcttaaa agtattactt tataggcata ttaaatgtct
4530 3781 tgagtgctta agtgaagaaa tgcaaatatg ttttaccaaa actaaaagac gttttcataa
4531 3841 ttaacagtaa gttgaagtgc taggtttgca ctttacaaca ctgaaaatga ttatccttta
4532 3901 caaaaacgtg ttctgtgcca cttgtgtgga gggcaaagca agctgtgtag tagcatagga
4533 3961 ggctacaagt gatgaacttg tgctgttggg atcaagtggc ttactagttg tttaaaaggg
4534 4021 taaatctgaa agacgcttct tctgggtaag ccatacatct ggatttgagt tcagcatctg
4535 4081 gtctaatgaa cagagagatt cattcataac aggtggactg tccaacctca actcgatgtg
4536 4141 gctttgaatt acttttgcac gcacagcttc ccgattgagg aggtcttgat gacatgcccc
4537 4201 ctgctgtgtc agtaaaaaga aagacatcct actgttgtac agctacagat gaactggtgt
4538 4261 ttaaaataca ataaatcctg tacatattta aaaagaacga acaacgaaca ttgtgaaaac
4539 4321 ttcagttgtt taactttcta aataatgaca ttttgcttgg agaatatctt atttattgtc
4540 4381 aaagtgaagt tctaataaat agcttgtaac agtgcttctg aaaaaaaaaa aaaaaaaaaa
4541 4441 aaaaaaataa aaaaaaaaaa aaa
4542 //
4543
4544 LOCUS NM_001012804 4592 bp mRNA linear VRT 12-JAN-2017
4545 DEFINITION Gallus gallus protein kinase C alpha (PRKCA), mRNA.
4546 ACCESSION NM_001012804 XM_415682
4547 VERSION NM_001012804.1
4548 KEYWORDS RefSeq.
4549 SOURCE Gallus gallus (chicken)
4550 ORGANISM Gallus gallus
4551 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4552 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4553 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4554 Phasianidae; Phasianinae; Gallus.
4555 REFERENCE 1 (bases 1 to 4592)
4556 AUTHORS Guo D, Standley C, Bellve K, Fogarty K and Bao ZZ.
4557 TITLE Protein kinase Calpha and integrin-linked kinase mediate the
4558 negative axon guidance effects of Sonic hedgehog
4559 JOURNAL Mol. Cell. Neurosci. 50 (1), 82-92 (2012)
4560 PUBMED 22521536
4561 REMARK GeneRIF: PKCalpha directly phosphorylates integrin-linked kinase on
4562 threonine-173 and -181 in vitro. Dominant negative PKCalpha
4563 disrupts RGC axon pathfinding at the optic chiasm.
4564 REFERENCE 2 (bases 1 to 4592)
4565 AUTHORS Tunsophon S and Nemere I.
4566 TITLE Protein kinase C isotypes in signal transduction for the
4567 1,25D3-MARRS receptor (ERp57/PDIA3) in steroid hormone-stimulated
4568 phosphate uptake
4569 JOURNAL Steroids 75 (4-5), 307-313 (2010)
4570 PUBMED 20079367
4571 REMARK GeneRIF: PKCalpha and PKCbeta are both involved in
4572 steroid-stimulated phosphate uptake.
4573 REFERENCE 3 (bases 1 to 4592)
4574 AUTHORS Suh HN, Lee YJ and Han HJ.
4575 TITLE Interleukin-6 promotes 2-deoxyglucose uptake through p44/42 MAPKs
4576 activation via Ca2+/PKC and EGF receptor in primary cultured
4577 chicken hepatocytes
4578 JOURNAL J. Cell. Physiol. 218 (3), 643-652 (2009)
4579 PUBMED 19006119
4580 REMARK GeneRIF: IL-6 stimulates the 2-deoxyglucose uptake through p44/42
4581 MAPKs activation via Ca(2+)/PKC and EGF receptor in primary
4582 cultured chicken hepatocytes.
4583 REFERENCE 4 (bases 1 to 4592)
4584 AUTHORS Lee SH, Lee MY, Lee JH and Han HJ.
4585 TITLE A potential mechanism for short time exposure to hypoxia-induced
4586 DNA synthesis in primary cultured chicken hepatocytes: Correlation
4587 between Ca(2+)/PKC/MAPKs and PI3K/Akt/mTOR
4588 JOURNAL J. Cell. Biochem. 104 (5), 1598-1611 (2008)
4589 PUBMED 18646054
4590 REMARK GeneRIF: Short time exposure to hypoxia increases DNA synthesis in
4591 primary cultured chicken hepatocytes through cooperation of
4592 Ca2+/PKC, p38 MAPK, p44/42 MAPKs, and PI3K/Akt pathways.
4593 REFERENCE 5 (bases 1 to 4592)
4594 AUTHORS Pan JQ, Tan X, Li JC, Sun WD, Huang GQ and Wang XL.
4595 TITLE Reduced PKCalpha expression in pulmonary arterioles of broiler
4596 chickens is associated with early feed restriction
4597 JOURNAL Res. Vet. Sci. 84 (3), 434-439 (2008)
4598 PUBMED 17707446
4599 REMARK GeneRIF: Early time feed restriction inhibits pulmonary vascular
4600 remodeling in broilers, which may be partly attributed to reduced
4601 PKCalpha expression in pulmonary arterioles.
4602 REFERENCE 6 (bases 1 to 4592)
4603 AUTHORS Suh HN, Lee SH, Lee MY, Lee YJ, Lee JH and Han HJ.
4604 TITLE Role of interleukin-6 in the control of DNA synthesis of
4605 hepatocytes: involvement of PKC, p44/42 MAPKs, and PPARdelta
4606 JOURNAL Cell. Physiol. Biochem. 22 (5-6), 673-684 (2008)
4607 PUBMED 19088449
4608 REMARK GeneRIF: IL-6 stimulates the proliferation of primary cultured
4609 chicken hepatocytes through PKC, p44/42 MAPKs, and PPARdelta
4610 pathways.
4611 REFERENCE 7 (bases 1 to 4592)
4612 AUTHORS Lee YA, Kang SS, Baek SH, Jung JC, Jin EJ, Tak EN and Sonn JK.
4613 TITLE Redifferentiation of dedifferentiated chondrocytes on chitosan
4614 membranes and involvement of PKCalpha and P38 MAP kinase
4615 JOURNAL Mol. Cells 24 (1), 9-15 (2007)
4616 PUBMED 17846494
4617 REMARK GeneRIF: p38 MAP kinase activities are required for chondrocyte
4618 redifferentiation in a model system of dedifferentiated
4619 chondrocytes
4620 GeneRIF: PKC and p38 MAP kinase activities are required for
4621 chondrocyte redifferentiation in a model system of dedifferentiated
4622 chondrocytes.
4623 REFERENCE 8 (bases 1 to 4592)
4624 AUTHORS Wang W and Kirsch T.
4625 TITLE Annexin V/beta5 integrin interactions regulate apoptosis of growth
4626 plate chondrocytes
4627 JOURNAL J. Biol. Chem. 281 (41), 30848-30856 (2006)
4628 PUBMED 16914549
4629 REMARK GeneRIF: binding of annexin V to active PKCalpha stimulates
4630 apoptotic events in growth plate chondrocytes and binding of
4631 annexin V to beta5 integrin controls these interactions and
4632 ultimately apoptosis
4633 REFERENCE 9 (bases 1 to 4592)
4634 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4635 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4636 P, Hayashizaki Y and Buerstedde JM.
4637 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4638 gene function analysis
4639 JOURNAL Genome Biol. 6 (1), R6 (2005)
4640 PUBMED 15642098
4641 REFERENCE 10 (bases 1 to 4592)
4642 AUTHORS Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N and Klein
4643 J.
4644 TITLE The phylogenetic relationship of tetrapod, coelacanth, and lungfish
4645 revealed by the sequences of forty-four nuclear genes
4646 JOURNAL Mol. Biol. Evol. 21 (8), 1512-1524 (2004)
4647 PUBMED 15128875
4648 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4649 NCBI review. The reference sequence was derived from AJ851529.1.
4650 On Mar 14, 2005 this sequence version replaced gi:50757860.
4651
4652 ##Evidence-Data-START##
4653 Transcript exon combination :: AJ851529.1 [ECO:0000332]
4654 RNAseq introns :: mixed/partial sample support
4655 SAMEA2201357, SAMEA2201358
4656 [ECO:0000350]
4657 ##Evidence-Data-END##
4658 FEATURES Location/Qualifiers
4659 source 1..4592
4660 /organism="Gallus gallus"
4661 /mol_type="mRNA"
4662 /db_xref="taxon:9031"
4663 /chromosome="18"
4664 /map="18"
4665 /breed="Leghorn"
4666 gene 1..4592
4667 /gene="PRKCA"
4668 /note="protein kinase C alpha"
4669 /db_xref="CGNC:50506"
4670 /db_xref="GeneID:417430"
4671 CDS 68..2092
4672 /gene="PRKCA"
4673 /EC_number="2.7.11.1"
4674 /codon_start=1
4675 /product="protein kinase C alpha type"
4676 /protein_id="NP_001012822.1"
4677 /db_xref="CGNC:50506"
4678 /db_xref="GeneID:417430"
4679 /translation="MADVFPGSEPGAAPDAARRFARKGALRQKNVHEVKEHKFIARFF
4680 KQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKH
4681 KFKIHTYGSPTFCDHCGSLLYGLLHQGMKCDTCDMNVHKQCVINVPSLCGMDHTEKRG
4682 RIYLKAEVTGDKLEVTVREAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTFRST
4683 LNPHWNESFTFKLKPTDKDRRLSVEVWDWDRTTRNDFMGSLSFGVSELMKMPASGWYK
4684 LLNQEEGEYYNVPIPDADEDGNAELRQKFEKAKLGPAGNKVITPSEDRNSSVPSNNLD
4685 RVKLTDFNFLMVLGKGSFGKVMLADRKNTEELYAIKILKKDVVIQDDDVECTMVEKRV
4686 LALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEIS
4687 VGLFFLHNRGIVYRDLKLDNVMLDSEGHIKIADFGMCKEHMLDGVTTRTFCGTPDYIA
4688 PEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKE
4689 AVSICKGLMTKHPAKRLGCGLEGERDIREHAFFRRIDWEKLENREIQPPFKPKVCGKG
4690 AENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQFVHPLLENVA"
4691 ORIGIN
4692 1 ggttcggcgg ccgccggacg gttgcgtgac gaggcgggca gatccttctg gatacgagcg
4693 61 gagagccatg gccgacgtgt tcccgggctc cgagcccggc gcggccccgg acgcggcgcg
4694 121 gcgctttgct cgcaaagggg ccctgaggca gaagaacgtg cacgaggtga aggagcacaa
4695 181 attcatcgcg cgcttcttca agcagcccac cttctgcagc cactgcaccg acttcatctg
4696 241 gggatttggg aaacaaggat ttcagtgcca agtttgctgt tttgtggttc ataagagatg
4697 301 ccatgagttc gttaccttct cctgtcctgg agctgacaag ggacctgaca ccgatgaccc
4698 361 caggagcaag cacaaattta agatccacac ctatgggagc ccaaccttct gtgaccactg
4699 421 tgggtccctt ctttatgggc tcctacacca agggatgaaa tgtgacactt gtgatatgaa
4700 481 tgtgcataag caatgtgtga taaacgtccc gagcctctgt ggcatggatc acactgagaa
4701 541 aaggggaagg atttatctga aggctgaagt cactggtgac aaactggaag taacagtgcg
4702 601 agaagcaaaa aacctaattc ccatggatcc aaatgggctt tcagatcctt atgttaaact
4703 661 gaaacttatc ccagatccca agaatgaaag taaacaaaaa acaaaaacct tccgttctac
4704 721 cctgaatcca cactggaatg agtcattcac atttaaatta aaacctacag acaaagatcg
4705 781 acggctctct gtagaggtct gggactggga tcgaacaacc aggaatgatt ttatgggctc
4706 841 tctttcattt ggggtgtcag agctcatgaa gatgccagcc agtggatggt acaagctgct
4707 901 gaatcaagaa gaaggtgaat attataatgt tccaattcca gatgctgacg aggatggaaa
4708 961 tgcagagctc cggcagaagt tcgagaaagc caaacttggg ccagctggta acaaagtcat
4709 1021 tactccatca gaagacagga attcaagtgt gccatccaac aatctggaca gggtgaaact
4710 1081 gacagatttc aactttctta tggttcttgg aaaaggaagc tttggaaagg tgatgctggc
4711 1141 ggacaggaag aatacagagg agctctatgc aatcaaaata ctgaaaaaag atgtggtgat
4712 1201 tcaggatgat gatgttgagt gtacaatggt tgaaaaacga gtgctagcac tgcaggataa
4713 1261 accaccattc ctgacacagc ttcactcatg tttccaaaca gttgaccgcc tgtattttgt
4714 1321 tatggagtat gtgaatggtg gggatctcat gtaccacatt cagcaagtag gaaaatttaa
4715 1381 ggagccacaa gcagtgttct atgcagctga gatctcagtt gggttattct ttctccataa
4716 1441 tagagggatt gtttatagag atctgaaatt ggataatgtg atgttggatt cagaaggaca
4717 1501 cattaaaatt gctgactttg gaatgtgcaa agaacatatg ttagatggag taacaaccag
4718 1561 gaccttctgt ggcaccccag attacatcgc accggagatc attgcttatc agccctatgg
4719 1621 gaagtctgtg gattggtggg catatggagt gctgctctac gagatgttag ctggccagcc
4720 1681 tccatttgat ggagaagatg aagatgaact tttccagtcc ataatggaac ataatgtttc
4721 1741 ctatccaaaa tcgctgtcca aagaagctgt ctccatctgc aaggggctaa tgactaaaca
4722 1801 tcccgcaaag cgccttggct gcggcctcga aggtgaaaga gacatcaggg aacacgcttt
4723 1861 cttcaggaga attgactggg agaaactgga aaacagagag atccagccac ctttcaagcc
4724 1921 caaagtgtgt ggcaaaggtg ctgaaaactt cgataaattc ttcacgcgag gacagccggt
4725 1981 gttgaccccg ccagaccagc tggtcattgc taacatagat caatccgatt ttgaagggtt
4726 2041 ctcctatgtc aacccccagt ttgtacatcc cctcctagaa aatgtagcat gaaacagcag
4727 2101 aacaggaaca aatcccgcag tggggaacgg ttcttaaccc taaaattttt aggtttttgc
4728 2161 cttgattccg tttgggcctg aaaattatag ggttagaaag tgtaagatgg gagaaaggcc
4729 2221 acttagtgag gattttgact ttgcaaccaa aacgtcttaa tgggagataa attagcatac
4730 2281 agtgcccatt tctcctacta gaagtcacca tgactcgtct gaagttcccc atttttggta
4731 2341 cattctgtag ttctgtagct ccccgctgtc cttttgctcc gtttttcact ccgctgctgt
4732 2401 tacaaataat ccaagacccg acctgagaag cacctccagt actcagtcct tgcaggggac
4733 2461 cagctccccg ctcctatggg caccatgggg agagcagcgc acgggactgg agagcgccgg
4734 2521 ggaggagagg cattgcagaa tgtggtggaa agcagttgtt accaaaaccc gacaaataaa
4735 2581 tacgagttgg gagtgggagg gcagggggga tgaaatccta ttagagccca aagcttcgtg
4736 2641 aaccaatcct gtaagcaaca ccaaatttaa acacgctccg gcagtggcca gatctctaga
4737 2701 tctttgctaa gtagcatgtg ataaactcga gggtgaagtt ttgtctttaa taataataat
4738 2761 aatagtaata attttaataa tatttttgtg aattttaatc tccgtgagat tattctgtga
4739 2821 tccagggtgc cattgtttgt tcagttgatt tcatttgcac cactcctcaa gctcactgtt
4740 2881 gactggttct aataacacca acgttttact atgagatttg ttaacctgga atgtaaaaca
4741 2941 gaactgtaat cccttacatc ttatttactt gtgtgtgttg tagtctgcag tatagggcag
4742 3001 taaattgaag gaagtattgt gtatgctaaa ttaacaaaaa cgcagtccca ggtgactccc
4743 3061 tgatttttcc agaacaactc atgaaaatga attgagattt agttctacag taatcaattc
4744 3121 taactcagaa aacttggggc tgtacaataa ccaagcttga aagaagcacc tgaagcttgt
4745 3181 tttattggca gaatggaatt taacacattt tacatacgct tcatgcaatg aattttgcat
4746 3241 gtttagtaat aactcttaat aataagagtt aataataagc agttctatat tgacattacc
4747 3301 atatcaagca tacagagtat tacaaaagtt ttataaaaca aattgtgctt tatttgtgga
4748 3361 agtacttgtt ctgaacgaca tcatttaggt ttagctcaat gttttcttgc tgttgttttg
4749 3421 ggttgttttt ttctagtttt tggatattgt taatgactta gggtatcatc tgttttttta
4750 3481 aacgtagatc tacttttaaa caataattgc tacctgcagg ttttatacaa gtttcaatta
4751 3541 ggcttttgtt tcatgtctgc tgattactga cagggaaaga aatagatttt atttgcaatg
4752 3601 atgaacgctg taattaatgc aatcttctcc tctcctatct cacttagata caaattttga
4753 3661 tatttcctct taccaactta ccagaagatc ttaattcaaa tatcagtaaa tatttttgtg
4754 3721 cttactttgg ttttgttaca gcatgtaaaa tagtaggcgg tgcgttttcc ttttcttccc
4755 3781 ttcagcctcg ttaatggtag cagccatagg cactctttgt ctgtcggatg tgcatgatga
4756 3841 tgccagaagc atgatgtctc tgttgctgca tgcagactga atacagtttt tccagcatgt
4757 3901 aaacatattc aaaaagtcag atatttgcca taaaagactt acatttatac tagaatatgt
4758 3961 aaccggaggg tgggggtggg agcggggggg gaggaatcta ctttctaatc atcttttatt
4759 4021 acaataaaac attgagcctg tgccaaagat tctgctagaa agatccagtc ctgcagattg
4760 4081 gacggcgatg atgtgcagga gtgaccccgt ggcacatggg acagttggtg agcgaaccgc
4761 4141 agctggatgt gagcagaagc ggccgtgcgg tgctcctgca ccacggatgc cttccaaagc
4762 4201 cgtcctttgg cgcctgggat ttgcagcact ccagttgtgt gaccagccct gcttcctttg
4763 4261 tggtcacagc cctaaggttg gagcatcccc agagagggct cagcccgtgt tggatggacc
4764 4321 cggcgctgac acatggcatc ccccaacgaa cagctcccca gattgttgcc taaataaaca
4765 4381 gaactcaaac attttaatac attttaggag tacagttttt caactatccg gtgtcagata
4766 4441 tgttatcagc caaatttggg cattcgtttt cctctttgtg tattatatac ctgaagatta
4767 4501 tggtatgttg ttccccataa agcatgtgga ctagtgcagc aaaaaaaaaa aaaaaaaaaa
4768 4561 aaaaaaaaaa aaaaacaaaa aaaaaaaaaa aa
4769 //
4770
4771 LOCUS NM_001006355 1767 bp mRNA linear VRT 11-JAN-2017
4772 DEFINITION Gallus gallus ras-related protein Rab-18-B (RAB18), mRNA.
4773 ACCESSION NM_001006355 XM_418585
4774 VERSION NM_001006355.1
4775 KEYWORDS RefSeq.
4776 SOURCE Gallus gallus (chicken)
4777 ORGANISM Gallus gallus
4778 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4779 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4780 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4781 Phasianidae; Phasianinae; Gallus.
4782 REFERENCE 1 (bases 1 to 1767)
4783 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
4784 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
4785 P, Hayashizaki Y and Buerstedde JM.
4786 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
4787 gene function analysis
4788 JOURNAL Genome Biol. 6 (1), R6 (2005)
4789 PUBMED 15642098
4790 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4791 NCBI review. The reference sequence was derived from AJ719773.1.
4792 On Jan 13, 2005 this sequence version replaced gi:50732330.
4793
4794 ##Evidence-Data-START##
4795 Transcript exon combination :: AJ719773.1, AJ455751.1 [ECO:0000332]
4796 RNAseq introns :: single sample supports all introns
4797 SAMEA2201366, SAMN03354473
4798 [ECO:0000348]
4799 ##Evidence-Data-END##
4800 FEATURES Location/Qualifiers
4801 source 1..1767
4802 /organism="Gallus gallus"
4803 /mol_type="mRNA"
4804 /db_xref="taxon:9031"
4805 /chromosome="2"
4806 /map="2"
4807 /breed="Leghorn"
4808 gene 1..1767
4809 /gene="RAB18"
4810 /note="ras-related protein Rab-18-B"
4811 /db_xref="CGNC:5610"
4812 /db_xref="GeneID:420483"
4813 CDS 64..684
4814 /gene="RAB18"
4815 /note="RAB18, member RAS oncogene family"
4816 /codon_start=1
4817 /product="ras-related protein Rab-18"
4818 /protein_id="NP_001006355.1"
4819 /db_xref="CGNC:5610"
4820 /db_xref="GeneID:420483"
4821 /translation="MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD
4822 FKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW
4823 LNELETYCTRNDIVKMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC
4824 AFEELVEKIIQTPGLWESESQNKGVKLSNKEEGHGGGACGGYCSML"
4825 mat_peptide 64..672
4826 /gene="RAB18"
4827 /product="Ras-related protein Rab-18"
4828 /experiment="experimental evidence, no additional details
4829 recorded"
4830 /note="propagated from UniProtKB/Swiss-Prot (Q5ZLG1.1)"
4831 misc_feature 172..198
4832 /gene="RAB18"
4833 /experiment="experimental evidence, no additional details
4834 recorded"
4835 /note="propagated from UniProtKB/Swiss-Prot (Q5ZLG1.1);
4836 Region: Effector region. {ECO:0000250}"
4837 misc_feature 670..672
4838 /gene="RAB18"
4839 /experiment="experimental evidence, no additional details
4840 recorded"
4841 /note="Cysteine methyl ester. {ECO:0000255}; propagated
4842 from UniProtKB/Swiss-Prot (Q5ZLG1.1); methylation site"
4843 ORIGIN
4844 1 gccgcagcct gtgtagggag cgtctgtcgg tcggggccgg gcagggccgg gcgcgccgac
4845 61 gggatggacg aggacgtgtt gaccacgctg aagattctca ttatcggcga gagcggcgtc
4846 121 ggcaagtcca gccttctgct gcgattcaca gatgatacat ttgacccaga acttgcagca
4847 181 acaattggtg tagacttcaa ggtgaaaact atttcagttg atggaaacaa agctaaacta
4848 241 gcaatatggg atactgcggg tcaggagcgg ttcagaacac taacacccag ttactacaga
4849 301 ggtgcacagg gtgttattct ggtttatgat gttacaagaa gagatacttt tgtcaagctg
4850 361 gataactggt taaatgaact ggaaacgtac tgcacaagga atgacatagt gaaaatgctt
4851 421 gttggaaaca agattgataa ggaaaaccgt gaagttgaca gaaacgaagg tctcaaattt
4852 481 gcaagaaaac attccatgtt gttcatagag gcaagtgcaa aaacctgcga cggtgtacag
4853 541 tgtgcctttg aagaacttgt ggaaaaaatc attcagactc ctggactgtg ggagagtgag
4854 601 agccaaaaca aaggtgtaaa attatcaaac aaggaagaag gacatggagg aggcgcatgt
4855 661 ggtggatatt gttctatgtt ataaactttg ggaggcttat tctttgcata tttaaacaga
4856 721 tagtgacatc tttctgtaaa taaatccatt aaatgctatt tttagggacc ttgcagtttg
4857 781 cacatacttg ttttgtatca tggcagtgaa cacttgtagg aaaaatgttc tgcagctttc
4858 841 ccagtttgag aatgttatgg taagcatgcc caatttgcca tcttcaggtt tttataaagt
4859 901 agcataaata atgtgcagga acaaatgcac taaaagtttt atgactgtat acatccatca
4860 961 tgtaagtatt ctaaacaaat ccatctaaca catgcacatt actacattgt ttgctttctg
4861 1021 tctcattttt aaatactctt gaaattacag aactacgtag tgcacacaga ccttgaaaac
4862 1081 agcgtaagct ataaatgtta catttcatct cttctagtag atgctttttt gatattaaaa
4863 1141 acaacgtgat tatacagttc ttagataaat gctgaatttt aatttcagct gagctgtcaa
4864 1201 aaatacaaat tggcataggc cataattgat atcagcacct tctggaagag atgccgtgaa
4865 1261 agcttccttt gcaaagctga gggatgccct tttttctttt taatcatcac ttcagttgat
4866 1321 ggcttaactg gagttttaat cctgtgatat ttatatacta aatttgtggt actcttgcac
4867 1381 tctaggtttt tatgatgcag tttactctag gtctgctgta gaaagtcttc atttttggca
4868 1441 aggagtctaa atgacatctt tgttctttca ttgtgaatca gcttgccact cttcagtaca
4869 1501 gatgcctcat tttcttaaat gtttataact atctcaaact gtagctcact atggctgtga
4870 1561 agatctgtat tatgtctgct ttgtgtggct acctgtttgg aaatataact tcctatcaca
4871 1621 gacactaaat gggaagctcc ggggctactg tatggaaaat actacaatga gtattcactt
4872 1681 gaattaactg tatcaaagcc aatggtttgt ttcagaagac ttgtatagac taataaattt
4873 1741 tttttccaca gtaaaaaaaa aaaaaaa
4874 //
4875
4876 LOCUS NM_204172 1574 bp mRNA linear VRT 11-JAN-2017
4877 DEFINITION Gallus gallus limb development membrane protein 1 (LMBR1), mRNA.
4878 ACCESSION NM_204172
4879 VERSION NM_204172.1
4880 KEYWORDS RefSeq.
4881 SOURCE Gallus gallus (chicken)
4882 ORGANISM Gallus gallus
4883 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
4884 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
4885 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
4886 Phasianidae; Phasianinae; Gallus.
4887 REFERENCE 1 (bases 1 to 1574)
4888 AUTHORS Huang Y, Chen W, Li N, Deng X, Kang X and Liu X.
4889 TITLE Identification of an alternative splicing isoform of chicken Lmbr1
4890 JOURNAL Mol. Biol. Rep. 38 (7), 4397-4403 (2011)
4891 PUBMED 21161408
4892 REMARK GeneRIF: Chicken Lmbr1 was alternatively spliced to generate
4893 multiple splice forms.
4894 REFERENCE 2 (bases 1 to 1574)
4895 AUTHORS Huang Y, Du X, Deng X, Qiu X, Wang C, Chen W, Li N and Wu C.
4896 TITLE Single nucleotide polymorphisms in chicken lmbr1 gene were
4897 associated with chicken growth and carcass traits
4898 JOURNAL Sci. China, C, Life Sci. 50 (1), 62-69 (2007)
4899 PUBMED 17393084
4900 REMARK GeneRIF: Lmbr1 gene could be a genetic locus or linked to a major
4901 gene significantly affecting growth and carcass traits in chickens.
4902 REFERENCE 3 (bases 1 to 1574)
4903 AUTHORS Huang YQ, Deng XM, Du ZQ, Qiu X, Du X, Chen W, Morisson M, Leroux
4904 S, Ponce de Leon FA, Da Y and Li N.
4905 TITLE Single nucleotide polymorphisms in the chicken Lmbr1 gene are
4906 associated with chicken polydactyly
4907 JOURNAL Gene 374, 10-18 (2006)
4908 PUBMED 16650944
4909 REFERENCE 4 (bases 1 to 1574)
4910 AUTHORS Maas SA and Fallon JF.
4911 TITLE Isolation of the chicken Lmbr1 coding sequence and characterization
4912 of its role during chick limb development
4913 JOURNAL Dev. Dyn. 229 (3), 520-528 (2004)
4914 PUBMED 14991708
4915 REMARK GeneRIF: Lmbr1 is not required for normal chick limb development
4916 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
4917 NCBI review. The reference sequence was derived from AB105057.1.
4918
4919 Sequence Note: This sequence has been modified as follows: removed
4920 22 bp suspected to be vector contamination from the 3' end.
4921
4922 ##Evidence-Data-START##
4923 Transcript exon combination :: AB105057.1 [ECO:0000332]
4924 RNAseq introns :: mixed/partial sample support
4925 SAMEA2201357, SAMEA2201358
4926 [ECO:0000350]
4927 ##Evidence-Data-END##
4928 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
4929 1-1574 AB105057.1 1-1574
4930 FEATURES Location/Qualifiers
4931 source 1..1574
4932 /organism="Gallus gallus"
4933 /mol_type="mRNA"
4934 /db_xref="taxon:9031"
4935 /chromosome="2"
4936 /map="2"
4937 gene 1..1574
4938 /gene="LMBR1"
4939 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4940 ZRS"
4941 /note="limb development membrane protein 1"
4942 /db_xref="CGNC:48990"
4943 /db_xref="GeneID:373986"
4944 misc_feature 59..61
4945 /gene="LMBR1"
4946 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4947 ZRS"
4948 /note="upstream in-frame stop codon"
4949 CDS 65..1531
4950 /gene="LMBR1"
4951 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4952 ZRS"
4953 /note="limb region 1 homolog; differentiation-related gene
4954 14 protein"
4955 /codon_start=1
4956 /product="limb region 1 protein homolog"
4957 /protein_id="NP_989503.1"
4958 /db_xref="CGNC:48990"
4959 /db_xref="GeneID:373986"
4960 /translation="MEADEVSIREQNFHSQVREYTICFLLFAVLYIVSYFIITRYKRK
4961 ADEQEDEDAIVNRISLFLSTFTLAVSAGAVLLLPFSIISNEILLSFPQNYYIQWLNGS
4962 LIHGLWNLASLFSNLCLFVLMPFAFFFLESEGFAGLKKGIRARILETLVMLILLALLI
4963 LGIVWVASALIDNDAASMESLYDLWEFYLPYLYSCISLMGCLLLLLCTPVGLSRMFTV
4964 MGQLLVKPTILEDLDEQMYIITLEEEAIQRKLNGISSTLENQTVELERELEKVKCKKT
4965 NLERRKKASAWERNLVYPAVMILLLIETSISVLLVAFNILYLLVDETAMPKGSGGPGI
4966 GNASLSTFGFVGAALEIILIFYLMVSSVVGFYSLRFFENFIPRKDDTTMTKIIGNCVS
4967 ILVLSSALPVMSRTLGITRFDLLGDFGRFNWLGNFYIVLSYNLLFAIMTTLCLVRKFT
4968 SAVREELLKALGLDKLHLSNNPRDSETKPSANGHQKTL"
4969 misc_feature 119..181
4970 /gene="LMBR1"
4971 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4972 ZRS"
4973 /experiment="experimental evidence, no additional details
4974 recorded"
4975 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
4976 transmembrane region"
4977 misc_feature 248..310
4978 /gene="LMBR1"
4979 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4980 ZRS"
4981 /experiment="experimental evidence, no additional details
4982 recorded"
4983 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
4984 transmembrane region"
4985 misc_feature 392..454
4986 /gene="LMBR1"
4987 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4988 ZRS"
4989 /experiment="experimental evidence, no additional details
4990 recorded"
4991 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
4992 transmembrane region"
4993 misc_feature 515..577
4994 /gene="LMBR1"
4995 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
4996 ZRS"
4997 /experiment="experimental evidence, no additional details
4998 recorded"
4999 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5000 transmembrane region"
5001 misc_feature 623..685
5002 /gene="LMBR1"
5003 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
5004 ZRS"
5005 /experiment="experimental evidence, no additional details
5006 recorded"
5007 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5008 transmembrane region"
5009 misc_feature 950..1012
5010 /gene="LMBR1"
5011 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
5012 ZRS"
5013 /experiment="experimental evidence, no additional details
5014 recorded"
5015 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5016 transmembrane region"
5017 misc_feature 1079..1141
5018 /gene="LMBR1"
5019 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
5020 ZRS"
5021 /experiment="experimental evidence, no additional details
5022 recorded"
5023 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5024 transmembrane region"
5025 misc_feature 1211..1273
5026 /gene="LMBR1"
5027 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
5028 ZRS"
5029 /experiment="experimental evidence, no additional details
5030 recorded"
5031 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5032 transmembrane region"
5033 misc_feature 1340..1402
5034 /gene="LMBR1"
5035 /gene_synonym="ACHP; C7orf2; DIF14; LSS; PPD2; THYP; TPT;
5036 ZRS"
5037 /experiment="experimental evidence, no additional details
5038 recorded"
5039 /note="propagated from UniProtKB/Swiss-Prot (Q7ZUA6.1);
5040 transmembrane region"
5041 ORIGIN
5042 1 acgcggggag caggcgcggc ggcggcggcc gccattgcgc gcgggggccg cgggactatg
5043 61 aaggatggag gcggacgagg tgtcgatccg cgagcagaac ttccacagcc aagtgcggga
5044 121 gtacacgatc tgttttctcc tatttgctgt tctctacata gtgtcctact tcataatcac
5045 181 aagatacaaa agaaaagcag atgagcaaga ggatgaagat gccatagtta acagaatatc
5046 241 gctgttcttg agcaccttca ctctagcagt ttcagctggt gcagtcctgc ttctgccttt
5047 301 ctcaataatc agcaatgaga tcctgctttc ttttccacaa aactactata ttcagtggtt
5048 361 aaatggctca ctaattcatg gtttatggaa tcttgcttct cttttttcca atttatgttt
5049 421 gtttgtgttg atgccctttg cctttttctt cttggagtcg gaaggatttg ctggcttaaa
5050 481 aaaggggatc agagcacgca ttctggagac ccttgtaatg ctcatacttc ttgcactgct
5051 541 tatccttgga atcgtatggg tggcttcagc tctcatagac aatgatgctg ccagtatgga
5052 601 gtctttgtac gacctctggg aattctacct cccatattta tattcctgta tatcactgat
5053 661 gggatgcttg ttacttctgt tatgcacgcc agtgggactt tcacggatgt ttacagtaat
5054 721 gggtcagttg ctggtgaagc caacaattct tgaggaccta gatgagcaga tgtatatcat
5055 781 cactttagag gaagaagcaa ttcagaggaa gcttaatggg atatcttcca cattggaaaa
5056 841 ccagacagtg gagttggaac gggagcttga aaaagtgaag tgcaagaaaa caaatctaga
5057 901 acgtcggaaa aaagcttctg cttgggagag gaatttagtg tatccagctg ttatgatatt
5058 961 gctactgatt gagacatcca tctcagtcct attagttgct ttcaacatcc tttacctgtt
5059 1021 ggttgatgag actgcaatgc caaaaggatc agggggacct ggaataggaa atgcatccct
5060 1081 atccaccttt ggttttgtgg gagcagcact tgaaatcatt ttgattttct atctcatggt
5061 1141 atcctctgtc gtcggcttct acagccttcg tttttttgaa aatttcattc ccaggaagga
5062 1201 tgatacaact atgacaaaga taattggaaa ctgtgtctca atcttggtgc tgagctcggc
5063 1261 tttgccagtg atgtcaagga cactgggaat tactcgattt gatctgcttg gagacttcgg
5064 1321 aaggtttaac tggctgggaa acttctatat tgtattatct tacaacttgc tctttgctat
5065 1381 catgacaaca ttgtgtctgg tcagaaagtt cacttctgct gtgcgagaag agctcctgaa
5066 1441 ggcattagga ttagataaac ttcatctgtc gaacaatcca agagactcag agacaaagcc
5067 1501 gtctgcaaat gggcatcaga aaacactgtg attgacaatc acctgcaatc aacagagctg
5068 1561 aaaacatcaa cctc
5069 //
5070
5071 LOCUS NM_204212 2751 bp mRNA linear VRT 11-JAN-2017
5072 DEFINITION Gallus gallus hexokinase 2 (HK2), mRNA.
5073 ACCESSION NM_204212
5074 VERSION NM_204212.1
5075 KEYWORDS RefSeq.
5076 SOURCE Gallus gallus (chicken)
5077 ORGANISM Gallus gallus
5078 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5079 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5080 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5081 Phasianidae; Phasianinae; Gallus.
5082 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
5083 NCBI review. The reference sequence was derived from AB083370.1.
5084
5085 ##Evidence-Data-START##
5086 Transcript exon combination :: AB083370.1 [ECO:0000332]
5087 RNAseq introns :: single sample supports all introns
5088 SAMEA2201357, SAMEA2201358
5089 [ECO:0000348]
5090 ##Evidence-Data-END##
5091 FEATURES Location/Qualifiers
5092 source 1..2751
5093 /organism="Gallus gallus"
5094 /mol_type="mRNA"
5095 /db_xref="taxon:9031"
5096 gene 1..2751
5097 /gene="HK2"
5098 /gene_synonym="hexokinase-2"
5099 /note="hexokinase 2"
5100 /db_xref="CGNC:49018"
5101 /db_xref="GeneID:374044"
5102 CDS 1..2751
5103 /gene="HK2"
5104 /gene_synonym="hexokinase-2"
5105 /EC_number="2.7.1.1"
5106 /codon_start=1
5107 /product="hexokinase-2"
5108 /protein_id="NP_989543.1"
5109 /db_xref="CGNC:49018"
5110 /db_xref="GeneID:374044"
5111 /translation="MIASHLLAYFFTELNHDQAQKVDKYLYHMRLSEDTLQEVSERFR
5112 KEMEKGLGADTNPTASVKMLPSFVRSTPDGTEDGDFLALDLGGTNFRVLRVKVSDNGL
5113 QKVEMESQIYEIHEDLMRGSGMQLFDHIAECLGNFMEKLKIKDKKLPLGFTFSFPCHQ
5114 TKLDESILVNWTKGFKCSSVEGKDVVSLLRRAIKKRGDFDIDIVAVVNDTVGTMMSCG
5115 YDDQNCEVGLIVGTGTNACYMEEMRHIDLVEGDEGRMCINMEWGAFGDDGALNDIRTE
5116 FDHEIDMGSLNPGKQLFEKMISGMYMGELVRLILVKMAKEGLLFQGKLSSDLRTTGHF
5117 ETRFVSAIEKEKEGLQKAHEILTKLGLEPSHEDCLATHRICQIVSTRSANLCGATLAA
5118 RLRRIKEYKGVDPLRSTVGVDGSVYKKYPHFARRLHKTVRKLLPDCEIRFVRSEDGSG
5119 KGAAMVTAVAYRLAAQHKARQKILEALKLSHEQLLEVKRRMRVEMEKGLGKETHAEAT
5120 VKMLPTYVCSTPDGTEKGDFLALDLGGTNFRVLLVRVRNGMRRGVEMHNKIYSIPLEV
5121 MQGTGEELFDHIVHCISDFLEYMGMKGVSLPLGFTFSFPCKQTNLDEGILLKWTKGFK
5122 ATGCEGEDVVSLLKEAIHRREEFDLDVVAVVNDTVGTMMTCGYEDPYCEVGLIVGTGS
5123 NACYMEEMRNVELVEGDEGRMCVNMEWGAFGDNGCLDDIQTEFDLAVDELSLNPGKQR
5124 FEKMISGMYLGEIVRNILMDFTKRGLLFRGRISERLKTRGIFETKFLSQIESDCLALL
5125 QVRSILQHLGLESTCDDSIIVKEVCTVVARRAAQLCGAGMAAVVDKIRENRGLDFLKV
5126 TVGVDGTLYKLHPHFSAIMQDTVRQLSPCCEVTFLQSEDGSGKGAALITAVACRIREA
5127 GQ"
5128 ORIGIN
5129 1 atgatcgcgt cccatctgct cgcctatttc ttcacggagc tcaaccatga ccaggcgcag
5130 61 aaggtggaca aatacctgta ccacatgcgg ctctccgagg acacactgca ggaggtgtcc
5131 121 gagcgcttcc gcaaggagat ggagaagggg ctgggagccg acaccaaccc caccgcctcc
5132 181 gtcaagatgc tgccctcctt cgtcaggtcc accccggacg ggacagagga cggagacttc
5133 241 ttggcactgg acctgggcgg caccaacttt cgtgtgctga gggtgaaggt gtccgacaac
5134 301 ggcctgcaga aggtggagat ggagagccag atctacgaga tccacgagga cctcatgcga
5135 361 ggcagtggga tgcagctctt tgaccacatc gccgagtgcc tgggcaactt catggagaag
5136 421 ctgaaaatca aggacaagaa gctgcccctt ggcttcacct tctccttccc gtgtcaccag
5137 481 accaagctgg atgagagcat cctcgtcaac tggacaaagg gattcaagtg cagcagcgtg
5138 541 gaggggaagg acgtggtgtc cctgctgcgc agggccatca aaaagcgcgg ggacttcgac
5139 601 atcgacatcg tggcggtggt aaacgacacc gttggcacca tgatgtcctg tggctatgat
5140 661 gaccagaact gtgaagtcgg actcatcgtg gggacgggca ccaacgcctg ctacatggag
5141 721 gagatgaggc acatcgacct ggtggagggg gacgagggcc ggatgtgcat caacatggag
5142 781 tggggcgcct tcggggacga cggcgcgctc aacgacatca ggaccgagtt cgaccatgag
5143 841 atagacatgg gctcgctcaa ccccggcaag cagctgttcg agaagatgat cagcgggatg
5144 901 tacatgggcg agctggtgcg cctcatcctg gtgaagatgg ccaaggaggg gctcctcttc
5145 961 caagggaagc tctcttcgga tctgcgcacc accggacact tcgagaccag atttgtctcc
5146 1021 gctattgaga aggagaaaga ggggctgcag aaagcccacg agatcctcac caagctgggc
5147 1081 ctggagccat cccacgagga ctgcctggcc acccaccgca tctgccagat cgtctccacc
5148 1141 cgctcggcca acctctgtgg ggccacgctg gccgcccgtc tgcgccgcat caaggagtat
5149 1201 aagggggtgg acccgctgcg ctccaccgtc ggcgtggatg gctccgtcta caagaagtac
5150 1261 ccgcactttg cccgacgcct ccataagaca gtgaggaagc tgctgcccga ctgcgagatc
5151 1321 cgattcgtga ggtcggaaga tggcagtggt aaaggggcgg ccatggtgac ggcggtggcc
5152 1381 taccggctgg cggcccagca caaggcccgg cagaagatcc tggaggcgct gaagctgagc
5153 1441 cacgagcagc tcctggaggt gaagcggagg atgagggttg aaatggagaa ggggttgggc
5154 1501 aaggagacgc acgcggaggc cacggtgaag atgctgccca catacgtgtg ctcaactcca
5155 1561 gacgggacag aaaaaggaga tttcctcgct ctggacctgg gggggacgaa cttccgtgtg
5156 1621 ctgctggtgc gggtgcggaa cgggatgcgg cgcggcgtgg agatgcacaa caagatctac
5157 1681 tccatccccc tggaggtgat gcaggggaca ggcgaggagc tcttcgacca catcgtccac
5158 1741 tgcatctccg acttcctgga atacatgggg atgaagggag tgtcgctccc gctgggcttc
5159 1801 accttctcct tcccatgcaa gcagaccaac ctggatgagg ggattctcct caagtggacg
5160 1861 aagggtttca aagccacggg ctgcgaaggg gaggacgtgg tgagcctgct gaaggaggca
5161 1921 atccaccgca gagaggagtt tgacctggac gtggtggcag tggtgaacga cacggtgggc
5162 1981 accatgatga cctgtggcta cgaagacccc tactgtgaag tcgggctgat agttggcaca
5163 2041 ggcagcaacg cctgctacat ggaggagatg cggaacgtgg agctggtgga gggcgacgag
5164 2101 ggccgcatgt gtgtcaacat ggagtggggt gcgtttgggg acaacggctg cttggatgac
5165 2161 atccagaccg agttcgattt ggccgtagat gagctgtccc tcaaccctgg gaagcagaga
5166 2221 tttgagaaga tgatcagcgg gatgtacctg ggggagatcg tccgcaacat cctgatggac
5167 2281 ttcaccaagc gagggctgct cttccgcggc cgcatctcag agcggctcaa gaccagaggg
5168 2341 atcttcgaga caaagttcct gtcccagata gaaagcgact gcctggccct gctgcaggtg
5169 2401 cgctccatcc tccagcacct gggcttggag agcacgtgtg atgacagcat catcgtcaag
5170 2461 gaggtgtgca ccgtggtggc ccggcgtgcc gcgcagctct gcggggccgg aatggccgcc
5171 2521 gtggtggata agatccgcga gaaccgtggg ctggacttcc tcaaggtgac ggtcggagtg
5172 2581 gatgggacgc tctacaaact gcacccacac ttctcggcca tcatgcagga cacggtgagg
5173 2641 cagctgtccc cgtgctgcga ggtgacgttc ctgcagtcgg aggacggcag cggtaaaggc
5174 2701 gcggcgctca tcacggccgt ggcgtgccgg atccgtgagg ccggtcagtg a
5175 //
5176
5177 LOCUS NM_001348012 2521 bp mRNA linear VRT 04-JAN-2017
5178 DEFINITION Gallus gallus ubiquitin specific peptidase 7 (USP7), transcript
5179 variant 2, mRNA.
5180 ACCESSION NM_001348012
5181 VERSION NM_001348012.1
5182 KEYWORDS RefSeq.
5183 SOURCE Gallus gallus (chicken)
5184 ORGANISM Gallus gallus
5185 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5186 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5187 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5188 Phasianidae; Phasianinae; Gallus.
5189 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5190 preliminary review. The reference sequence was derived from
5191 AADN04000130.1.
5192
5193 Transcript Variant: This variant (2) differs in the 3' coding
5194 region and contains a distinct 3' UTR, compared to variant 1. The
5195 resulting isoform (2) has a shorter and distinct C-terminus,
5196 compared to isoform 1.
5197
5198 Sequence Note: This RefSeq record was created from transcript and
5199 genomic sequence data to make the sequence consistent with the
5200 reference genome assembly. The genomic coordinates used for the
5201 transcript record were based on transcript alignments.
5202 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5203 1-240 AADN04000130.1 5955168-5955407
5204 241-345 AADN04000130.1 5978477-5978581
5205 346-544 AADN04000130.1 5983587-5983785
5206 545-683 AADN04000130.1 5985141-5985279
5207 684-772 AADN04000130.1 5988319-5988407
5208 773-881 AADN04000130.1 5989123-5989231
5209 882-1012 AADN04000130.1 5994344-5994474
5210 1013-1067 AADN04000130.1 5997303-5997357
5211 1068-1148 AADN04000130.1 5998393-5998473
5212 1149-1239 AADN04000130.1 5998561-5998651
5213 1240-1322 AADN04000130.1 5999425-5999507
5214 1323-1432 AADN04000130.1 6000453-6000562
5215 1433-1589 AADN04000130.1 6000975-6001131
5216 1590-1734 AADN04000130.1 6002153-6002297
5217 1735-1865 AADN04000130.1 6002875-6003005
5218 1866-2000 AADN04000130.1 6004074-6004208
5219 2001-2102 AADN04000130.1 6004362-6004463
5220 2103-2521 AADN04000130.1 6005189-6005607
5221 FEATURES Location/Qualifiers
5222 source 1..2521
5223 /organism="Gallus gallus"
5224 /mol_type="mRNA"
5225 /db_xref="taxon:9031"
5226 /chromosome="14"
5227 /map="14"
5228 /breed="Red Jungle Fowl"
5229 gene 1..2521
5230 /gene="USP7"
5231 /gene_synonym="UBP"
5232 /note="ubiquitin specific peptidase 7"
5233 /db_xref="CGNC:5523"
5234 /db_xref="GeneID:395126"
5235 CDS 162..2225
5236 /gene="USP7"
5237 /gene_synonym="UBP"
5238 /EC_number="3.4.19.12"
5239 /note="isoform 2 is encoded by transcript variant 2;
5240 ubiquitin carboxyl-terminal hydrolase 7; ubiquitin
5241 specific protease 7; ubiquitin thioesterase 7; ubiquitin
5242 specific peptidase 7 (herpes virus-associated);
5243 deubiquitinating enzyme 7; ubiquitin-specific-processing
5244 protease 7"
5245 /codon_start=1
5246 /product="ubiquitin carboxyl-terminal hydrolase 7 isoform
5247 2"
5248 /protein_id="NP_001334941.1"
5249 /db_xref="CGNC:5523"
5250 /db_xref="GeneID:395126"
5251 /translation="MNHHQQQQHQKPGEQQLSEPEDMEMEAGDADDPPRITQNPVING
5252 NVAMADGHNNTEEDMEDDTSWRSEATFQFTVERFNRLSESVLSPPCFVRNLPWKIMVM
5253 PRLYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFH
5254 KENDWGFSNFMAWSEVTDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKN
5255 QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGT
5256 KKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQC
5257 KHVDYRSERIEDYYDIQLSIKGKKNIFESFIDYVAVEQLDGDNKYDAGEHGLQEAEKG
5258 VKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL
5259 HAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR
5260 HCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQ
5261 VQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWP
5262 MQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPEMAATGATLPKFDKD
5263 RKLMC"
5264 misc_feature 318..785
5265 /gene="USP7"
5266 /gene_synonym="UBP"
5267 /experiment="experimental evidence, no additional details
5268 recorded"
5269 /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
5270 Region: Interaction with p53/TP53.
5271 {ECO:0000250|UniProtKB:Q93009}"
5272 misc_feature 369..776
5273 /gene="USP7"
5274 /gene_synonym="UBP"
5275 /experiment="experimental evidence, no additional details
5276 recorded"
5277 /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
5278 Region: Necessary for nuclear localization.
5279 {ECO:0000250|UniProtKB:Q93009}"
5280 ORIGIN
5281 1 ccctgcccgc cggagcccag ccgcagcccc ccgaggcggg cgcccaaccc cggcagctgc
5282 61 ccgtgccccg ccgctcctcc gccccgtccc ctcccgacgc agccccgcag ccccccacgg
5283 121 gaaaggccca ggccgccgcc gagcccgagt cccatcccga catgaaccac catcagcagc
5284 181 agcagcacca gaagcccggg gagcagcagc tgagcgagcc cgaggacatg gagatggaag
5285 241 ctggagatgc agatgatcct ccaagaatta ctcaaaaccc tgtcattaat gggaatgtag
5286 301 caatggctga tggacacaac aacactgaag aagacatgga agatgataca agttggcggt
5287 361 cagaggctac ctttcagttc acagtcgaac gcttcaacag attgagtgag tcagttctca
5288 421 gccctccctg ctttgtacgg aatttgccat ggaagatcat ggtcatgcca cgactctacc
5289 481 cagacagacc tcaccaaaaa agcgtaggat tcttcctcca gtgcaatgca gaatctgatt
5290 541 ccacgtcatg gtcttgtcat gcacaagcag ttctcaagat aataaactac aaagatgatg
5291 601 aaaaatcatt cagtcgtcgt attagtcact tgttctttca taaggaaaat gactggggct
5292 661 tttccaactt tatggcctgg agtgaagtta ctgatcctga aaagggcttt atagaagagg
5293 721 acaaggttac ttttgaagtc tatgttcaag cagatgctcc ccatggagtg gcgtgggatt
5294 781 caaagaagca cacaggatat gttggcttaa agaaccaggg agcaacttgt tacatgaaca
5295 841 gtttgttaca gactttattt ttcacaaatc aactacgaaa ggctgtgtac atgatgccca
5296 901 ctgaaggaga tgattcatcc aaaagtgttc ctttagcatt gcaaagagtg ttttatgagc
5297 961 tgcaacatag tgacaaacca gttggaacta aaaagctaac aaagtctttt gggtgggaaa
5298 1021 ctttagacag cttcatgcaa catgatgtcc aggagttatg tcgagtgctg cttgataacg
5299 1081 tggaaaataa aatgaaaggc acatgtgtag aaggcactat tcctaaattg ttcagaggaa
5300 1141 agatggtgtc ttatatccaa tgcaaacatg tagactatcg atctgaacga atagaagatt
5301 1201 attatgatat ccagctaagt ataaagggaa agaaaaatat ttttgagtcc ttcattgact
5302 1261 atgttgcagt ggagcagttg gatggtgata acaagtatga tgcaggagag catggcttgc
5303 1321 aggaggcaga gaaaggtgtg aagttcctaa cgttgccacc agtactacat ctgcagctca
5304 1381 tgagatttat gtatgatcct cagactgatc aaaacatcaa gataaatgat aggtttgagt
5305 1441 ttcctgaaca gttgccacta gatgaatttt tgcaaaaaac agatcctaaa gatccagcaa
5306 1501 attacattct tcatgcagtt ctagtacaca gtggagataa ccatggtgga cattatgttg
5307 1561 tttacttaaa tccaaagggt gatggaaaat ggtgtaaatt tgatgatgac gttgtatcaa
5308 1621 gatgtaccaa ggaagaggcg attgaacaca actatggagg ccacgacgac gacttatctg
5309 1681 tacggcactg cactaacgcg tacatgttgg tttacatcag ggaatcgaaa ttaagtgaag
5310 1741 tcttgcagcc tgttacggac catgatattc ctcagcaact tgtggaaagg ctacaagaag
5311 1801 agaaaagaat agaggctcag aagaggaagg agaggcagga agctcacctc tacatgcaag
5312 1861 tgcagatagt agcagaggat cagttctgcg gccaccaagg caatgacatg tatgatgaag
5313 1921 aaaaagtgaa atacaccgtt ttcaaagtat taaaaaactc cacgttgaca gaatttgttc
5314 1981 aaaacctctc tcaaacaatg ggatttcccc aggatcagat cagattatgg ccaatgcaag
5315 2041 ctagaagtaa tggaacaaaa agacctgcaa tgttagataa tgaagcagat ggcaataaaa
5316 2101 caatgattga gctcagcgac aatgaaaatc catggacaat atttttggaa acagtagatc
5317 2161 cagagatggc tgctactgga gcaacattac ccaagtttga taaagatcgt aagcttatgt
5318 2221 gctaaatctt gagtaaatgc aaaattcttt ggacatatct caagaaatgc tgtgcgctcc
5319 2281 tgtttttcaa tgctgttgtt gatgtactca tcaagctaca gagctggaat tagtttttct
5320 2341 tatacacttt ttgccctcac ttctacttaa gtggaaggca tgtttcaaat gttactggaa
5321 2401 taactgaata atttattttc tataaatata tgcagattta cataaaatca gtatttaagg
5322 2461 atgttttaag gatattaatc aaatgaataa aggaaggcct tttttttttt tactgcttaa
5323 2521 a
5324 //
5325
5326 LOCUS NM_204182 1454 bp mRNA linear VRT 04-JAN-2017
5327 DEFINITION Gallus gallus creatine kinase, mitochondrial 1A (CKMT1A), mRNA.
5328 ACCESSION NM_204182 XM_429227
5329 VERSION NM_204182.2
5330 KEYWORDS RefSeq.
5331 SOURCE Gallus gallus (chicken)
5332 ORGANISM Gallus gallus
5333 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5334 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5335 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5336 Phasianidae; Phasianinae; Gallus.
5337 REFERENCE 1 (bases 1 to 1454)
5338 AUTHORS Muhlebach SM, Wirz T, Brandle U and Perriard JC.
5339 TITLE Evolution of the creative kinases. The chicken acidic type
5340 mitochondrial creatine kinase gene as the first nonmammalian gene
5341 JOURNAL J. Biol. Chem. 271 (20), 11920-11929 (1996)
5342 PUBMED 8662608
5343 REFERENCE 2 (bases 1 to 1454)
5344 AUTHORS Hossle JP, Schlegel J, Wegmann G, Wyss M, Bohlen P, Eppenberger HM,
5345 Wallimann T and Perriard JC.
5346 TITLE Distinct tissue specific mitochondrial creatine kinases from
5347 chicken brain and striated muscle with a conserved CK framework
5348 JOURNAL Biochem. Biophys. Res. Commun. 151 (1), 408-416 (1988)
5349 PUBMED 2831887
5350 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5351 preliminary review. The reference sequence was derived from
5352 CO421284.1, BU295295.1, BU118323.1 and BU339387.1.
5353 On Jan 4, 2017 this sequence version replaced gi:45383751.
5354
5355 ##RefSeq-Attributes-START##
5356 gene product(s) localized to mito. :: inferred from homology
5357 ##RefSeq-Attributes-END##
5358 COMPLETENESS: complete on the 3' end.
5359 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5360 1-145 CO421284.1 9-153
5361 146-754 BU295295.1 1-609
5362 755-1440 BU118323.1 1-686
5363 1441-1454 BU339387.1 617-630
5364 FEATURES Location/Qualifiers
5365 source 1..1454
5366 /organism="Gallus gallus"
5367 /mol_type="mRNA"
5368 /db_xref="taxon:9031"
5369 /chromosome="10"
5370 /map="10"
5371 gene 1..1454
5372 /gene="CKMT1A"
5373 /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
5374 /note="creatine kinase, mitochondrial 1A"
5375 /db_xref="CGNC:48997"
5376 /db_xref="GeneID:374002"
5377 CDS 61..1314
5378 /gene="CKMT1A"
5379 /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
5380 /EC_number="2.7.3.2"
5381 /note="creatine kinase U-type, mitochondrial; creatine
5382 kinase, ubiquitous mitochondrial; ubiquitous mitochondrial
5383 creatine kinase; acidic-type mitochondrial creatine
5384 kinase; creatine kinase, mitochondrial 1B"
5385 /codon_start=1
5386 /product="creatine kinase U-type, mitochondrial precursor"
5387 /protein_id="NP_989513.2"
5388 /db_xref="CGNC:48997"
5389 /db_xref="GeneID:374002"
5390 /translation="MASTFARALSARRSAGLLAMVGAGSLAAGFLLARDTVSAGERQR
5391 RRYPPSAEYPDLRKHNNCMASNLTPAIYARLCDKATPNGWTLDQCIQTGVDNPGHPFI
5392 KTVGMVAGDEETYEVFAELFDPVIQERHNGYNPRTMKHVTDLDASKIKFGHFDERYVL
5393 SSRVRTGRSIRGLSLPPACTRAERREVEKVTVEALNGLTGDLSGRYYRLSEMTEKEQQ
5394 QLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKTFLIWINEEDHTRVISMEKG
5395 GNMKRVFERFCRGLKEVERLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPL
5396 LSKDSRFPKILENLRLQKRGTGGVDTAATGNVFDISNLDRLGKSEVELVQLVIDGVNY
5397 LIDCERRLEKGQDIRIPSPVPQFRH"
5398 transit_peptide 61..177
5399 /gene="CKMT1A"
5400 /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
5401 /experiment="experimental evidence, no additional details
5402 recorded"
5403 /note="Mitochondrion. {ECO:0000269|PubMed:2831887};
5404 propagated from UniProtKB/Swiss-Prot (P70079.1)"
5405 mat_peptide 178..1311
5406 /gene="CKMT1A"
5407 /gene_synonym="CKMT1; CKMT1B; mia-CK; U-MtCK"
5408 /product="Creatine kinase U-type, mitochondrial"
5409 /experiment="experimental evidence, no additional details
5410 recorded"
5411 /note="propagated from UniProtKB/Swiss-Prot (P70079.1)"
5412 ORIGIN
5413 1 ccgttcccat tcccatcacc tcctccgccg gcccccgccg cgctcgctcc ccgctccgcg
5414 61 atggccagca ccttcgcccg cgctctctcc gcccgccgct ctgccgggct cctggccatg
5415 121 gtgggcgccg gctctctcgc cgccggcttt ctgctcgccc gggacacggt cagcgccggc
5416 181 gagcggcagc ggcggcgcta cccgcccagt gctgagtacc ccgacctgcg gaaacacaac
5417 241 aactgcatgg ccagcaacct gacgccagcc atctacgcac ggctctgtga caaagccacc
5418 301 cccaacggct ggaccttgga ccagtgcatt cagaccggcg tggacaaccc aggccaccct
5419 361 ttcatcaaga cagtgggcat ggtggctggt gatgaggaga cgtatgaggt gtttgcagag
5420 421 ctgtttgacc ccgtgatcca ggagcggcac aacgggtaca acccccgcac catgaagcac
5421 481 gtcacggacc tggacgcctc caagattaag tttggccact tcgatgagcg ctacgtgctc
5422 541 tcatcccggg tccggaccgg gcgcagcatc cgtgggctga gccttccacc cgcctgcacc
5423 601 cgtgccgagc ggcgggaggt ggagaaggtg acggtggagg ctctgaatgg cctcacaggg
5424 661 gatctgtcgg gccgctacta ccgtctcagc gagatgacag agaaggagca gcagcagctc
5425 721 attgatgacc acttcctctt tgacaagccg gtgtcccctc tcctgacggc agcaggaatg
5426 781 gcccgggact ggcccgacgc ccgaggcatc tggcacaaca atgagaagac cttcctgatc
5427 841 tggatcaacg aggaggacca cacgcgcgtc atctccatgg agaagggtgg taacatgaag
5428 901 cgcgtctttg agcggttctg ccggggcctg aaggaggtgg agcgactaat ccaggagcga
5429 961 ggctgggagt tcatgtggaa tgagaggctg ggctacatcc tgacctgccc ctccaacctg
5430 1021 ggcaccgggc tgcgggcagg tgtccacatc aagctgccac tgctcagcaa ggacagccgc
5431 1081 ttccccaaga tcctggagaa cctgcggcta cagaagcgtg ggacaggcgg tgtggacaca
5432 1141 gcagccaccg gcaatgtctt cgacatctcc aacctggacc ggctggggaa gtcagaggtg
5433 1201 gaactggtgc agctggtgat agacggtgtg aactacctga tcgactgcga gcggcggctg
5434 1261 gagaagggtc aggacattcg catcccctcc ccagtaccac agttccggca ctgagccacg
5435 1321 ccgaggcagc gccagccctg caggacccag cttcccccat agcttatgcc atcaatgcgc
5436 1381 ccagcatgtc gctgtgctgt tacacacaga gccaggccag accccataaa catgtgctgc
5437 1441 tgtagcctta aaaa
5438 //
5439
5440 LOCUS NM_204788 1295 bp mRNA linear VRT 04-JAN-2017
5441 DEFINITION Gallus gallus aminomethyltransferase (AMT), mRNA.
5442 ACCESSION NM_204788 NM_001347941
5443 VERSION NM_204788.2
5444 KEYWORDS RefSeq.
5445 SOURCE Gallus gallus (chicken)
5446 ORGANISM Gallus gallus
5447 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5448 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5449 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5450 Phasianidae; Phasianinae; Gallus.
5451 REFERENCE 1 (bases 1 to 1295)
5452 AUTHORS Han JY, Park TS, Kim JN, Kim MA, Lim D, Lim JM and Kim H.
5453 TITLE Gene expression profiling of chicken primordial germ cell ESTs
5454 JOURNAL BMC Genomics 7, 220 (2006)
5455 PUBMED 16939661
5456 REMARK Publication Status: Online-Only
5457 REFERENCE 2 (bases 1 to 1295)
5458 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
5459 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
5460 TITLE A comprehensive collection of chicken cDNAs
5461 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
5462 PUBMED 12445392
5463 REFERENCE 3 (bases 1 to 1295)
5464 AUTHORS Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
5465 Korn B and Buerstedde JM.
5466 TITLE A large database of chicken bursal ESTs as a resource for the
5467 analysis of vertebrate gene function
5468 JOURNAL Genome Res. 10 (12), 2062-2069 (2000)
5469 PUBMED 11116100
5470 REFERENCE 4 (bases 1 to 1295)
5471 AUTHORS Okamura-Ikeda K, Fujiwara K and Motokawa Y.
5472 TITLE Molecular cloning of a cDNA encoding chicken T-protein of the
5473 glycine cleavage system and expression of the functional protein in
5474 Escherichia coli. Effect of mRNA secondary structure in the
5475 translational initiation region on expression
5476 JOURNAL J. Biol. Chem. 267 (26), 18284-18290 (1992)
5477 PUBMED 1526969
5478 REFERENCE 5 (bases 1 to 1295)
5479 AUTHORS Okamura-Ikeda K, Fujiwara K, Yamamoto M, Hiraga K and Motokawa Y.
5480 TITLE Isolation and sequence determination of cDNA encoding T-protein of
5481 the glycine cleavage system
5482 JOURNAL J. Biol. Chem. 266 (8), 4917-4921 (1991)
5483 PUBMED 2002038
5484 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5485 preliminary review. The reference sequence was derived from
5486 BG711851.1, AJ393058.1, DR418126.1, BU129545.1, AJ441868.1 and
5487 CR385258.1.
5488 On or before Jan 4, 2017 this sequence version replaced
5489 gi:1126305163, gi:45382156.
5490
5491 ##RefSeq-Attributes-START##
5492 gene product(s) localized to mito. :: inferred from homology
5493 ##RefSeq-Attributes-END##
5494 COMPLETENESS: complete on the 3' end.
5495 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5496 1-46 BG711851.1 1-46
5497 47-57 AJ393058.1 1-11
5498 58-78 DR418126.1 83-103
5499 79-126 BU129545.1 27-74
5500 127-324 AJ441868.1 47-244
5501 325-1295 CR385258.1 1-971
5502 FEATURES Location/Qualifiers
5503 source 1..1295
5504 /organism="Gallus gallus"
5505 /mol_type="mRNA"
5506 /db_xref="taxon:9031"
5507 /chromosome="12"
5508 /map="12"
5509 gene 1..1295
5510 /gene="AMT"
5511 /gene_synonym="GCVT"
5512 /note="aminomethyltransferase"
5513 /db_xref="CGNC:49377"
5514 /db_xref="GeneID:395566"
5515 CDS 86..1264
5516 /gene="AMT"
5517 /gene_synonym="GCVT"
5518 /EC_number="2.1.2.10"
5519 /note="T-protein; aminomethyltransferase, mitochondrial;
5520 glycine cleavage system T protein"
5521 /codon_start=1
5522 /product="aminomethyltransferase, mitochondrial precursor"
5523 /protein_id="NP_990119.2"
5524 /db_xref="CGNC:49377"
5525 /db_xref="GeneID:395566"
5526 /translation="MLRAGCRAALARRHLSSAPEGLKQTPLDALHRARGGRMVPFAGW
5527 SLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVYGRDRVRFLESLVVGDIAELRPGQ
5528 GTLTLLTNERGGIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVH
5529 LEVSDNALLALQGPSMAQVLQAGLPDDLTKLTFMTSTATTVFGVPGCRVTRCGYTGED
5530 GVEISVPAGRAVELAERLLGCPEVWPAGLAARDSLRLEAGLCLYGNDIDESTTPVEAG
5531 LLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVG
5532 TVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYYMAK
5533 "
5534 ORIGIN
5535 1 gcggcatgtc ccaggcgccc cggcggggcg ggccgagccg tgccgagccg tgccgagccg
5536 61 cgctgagccg ggccggggcc ggaggatgct gcgggcgggg tgccgcgccg cgttggcccg
5537 121 acgccacctg agctcggcgc cggaggggct gaagcagacg ccgctggacg cgctgcaccg
5538 181 ggcccgcggc gggaggatgg tgccgttcgc cggctggagc ctgcccgtgc agtacggccg
5539 241 cgggcacctc gagtcgcacc tgcacacccg gcggcactgc tcgctgttcg acgtgtccca
5540 301 catgctgcag acgcgggtgt acgggaggga ccgcgtccgc ttcctggaga gcctggtggt
5541 361 gggggacatc gccgagctgc gcccgggaca gggcaccctg acgctgctca ccaacgagcg
5542 421 cggcggcatc gtggatgacc tcatcgtcac caacacggcc gaggaccacc tctacgtggt
5543 481 gtccaacgcg ggctgcgccg acaaggaccg agccgtcatg gagggcagag cagcagaact
5544 541 gagggcggcc ggtggcgacg tgcacctgga ggtgtcggac aacgcgctgc tggcgctgca
5545 601 agggccctcc atggcacagg tgctgcaggc cgggctgccg gatgacctga ccaagctgac
5546 661 cttcatgacc agcacagcca ccaccgtctt tggcgtgccg ggctgccgtg tgacacgctg
5547 721 cggctacacc ggcgaggacg gtgtggagat ctcagtgcct gcagggcgag cagtggagct
5548 781 ggctgagcgg ctgctgggct gccccgaggt gtggccggca gggctggcag cccgggacag
5549 841 cctgcgcctg gaggccgggc tctgcctcta cggcaacgac atcgatgaga gcaccacgcc
5550 901 agtggaggct gggctgctgt ggaccctggg gaagcgccgg cgcacagcca tggacttccc
5551 961 cggtgcagcc atcatcatgg agcaggtgaa ggagaagcca aagcggaagc gtgtggggct
5552 1021 gacatcggtg gggccccccc tccggccgcc tgccgccatc ctgggccccg agggcacacc
5553 1081 cgtgggcacg gtgaccagcg gctgcccctc gccctccctg ggcaagaaca tcgccatggg
5554 1141 ctacgtgcag gctgcgcaca gccgccccgg caccacgctc accgttgagg tgaggaagaa
5555 1201 gcagcacccg gcgctggtca ccaagatgcc cttcgtgccc acacattatt acatggccaa
5556 1261 gtgagacccg gccccattaa agcccctcgc tcatc
5557 //
5558
5559 LOCUS NM_001347945 1440 bp mRNA linear VRT 04-JAN-2017
5560 DEFINITION Gallus gallus dynactin subunit 2 (DCTN2), mRNA.
5561 ACCESSION NM_001347945
5562 VERSION NM_001347945.1
5563 KEYWORDS RefSeq.
5564 SOURCE Gallus gallus (chicken)
5565 ORGANISM Gallus gallus
5566 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5567 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5568 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5569 Phasianidae; Phasianinae; Gallus.
5570 REFERENCE 1 (bases 1 to 1440)
5571 AUTHORS Froman DP, Kirby JD and Rhoads DD.
5572 TITLE An expressed sequence tag analysis of the chicken reproductive
5573 tract transcriptome
5574 JOURNAL Poult. Sci. 85 (8), 1438-1441 (2006)
5575 PUBMED 16903475
5576 REFERENCE 2 (bases 1 to 1440)
5577 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
5578 Burnside J, Aggrey SE, Simon J and Cogburn LA.
5579 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
5580 from single and multiple tissue cDNA libraries and CAP3 assembly of
5581 a chicken gene index
5582 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
5583 PUBMED 16554550
5584 REFERENCE 3 (bases 1 to 1440)
5585 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
5586 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
5587 TITLE A comprehensive collection of chicken cDNAs
5588 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
5589 PUBMED 12445392
5590 REFERENCE 4 (bases 1 to 1440)
5591 AUTHORS Valetti C, Wetzel DM, Schrader M, Hasbani MJ, Gill SR, Kreis TE and
5592 Schroer TA.
5593 TITLE Role of dynactin in endocytic traffic: effects of dynamitin
5594 overexpression and colocalization with CLIP-170
5595 JOURNAL Mol. Biol. Cell 10 (12), 4107-4120 (1999)
5596 PUBMED 10588646
5597 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5598 preliminary review. The reference sequence was derived from
5599 DT659451.1, CD215977.1, BU131902.1 and DR427218.1.
5600
5601 ##RefSeq-Attributes-START##
5602 inferred exon combination :: based on alignments, homology
5603 ##RefSeq-Attributes-END##
5604 COMPLETENESS: complete on the 3' end.
5605 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5606 1-21 DT659451.1 1-21
5607 22-486 CD215977.1 1-465
5608 487-1216 BU131902.1 1-730
5609 1217-1440 DR427218.1 1-224 c
5610 FEATURES Location/Qualifiers
5611 source 1..1440
5612 /organism="Gallus gallus"
5613 /mol_type="mRNA"
5614 /db_xref="taxon:9031"
5615 /breed="Leghorn"
5616 gene 1..1440
5617 /gene="DCTN2"
5618 /gene_synonym="P50"
5619 /note="dynactin subunit 2"
5620 /db_xref="CGNC:49387"
5621 /db_xref="GeneID:395587"
5622 CDS 34..1248
5623 /gene="DCTN2"
5624 /gene_synonym="P50"
5625 /note="dynamitin; p50 dynamitin; dynactin 2 (p50)"
5626 /codon_start=1
5627 /product="dynactin subunit 2"
5628 /protein_id="NP_001334874.1"
5629 /db_xref="CGNC:49387"
5630 /db_xref="GeneID:395587"
5631 /translation="MADPKYADLPGIARNEPDVYETSDLPEDDQAEFEAELEELTSTS
5632 VEHLIINPNAAFEKFKDKRLGTDGVDFSDRISKSRTTGYESGEYEILGEGLGAKETPQ
5633 QRYQRLQHEVQELIRDVEQIQSAVKESAAEEELTPMALARQLEGLKQQLVSCHLQKLL
5634 GPTAAIDFADPEGALAKRLQQQLEVAKCKKAAPAKSPPKAPAPTTDALTFELFWRPEQ
5635 DQFSQTAKIAELEKRLAQLEAMVRCEPDSQNPLLVGLKGTSLVETVQILQAKVNILDA
5636 AVLDQVEARLQSVLGKVNEIAKHKAIVQDADTQSKIHQVYEMMQRWDHMASSLPDVVQ
5637 RLLTLRDLHEQASRFVQVLVHLDTTQQEVAAALKDNTVLLAEVQKTMKENLAVVEDNF
5638 AEVEARIKRLQK"
5639 ORIGIN
5640 1 ccccgcccgg ccctgacggc ccccgccgca gccatggccg accccaaata cgcggacctg
5641 61 cccggcatcg cccggaatga gcccgacgtg tacgagacca gcgacctccc cgaggatgac
5642 121 caggccgagt tcgaggcgga gctggaggag ctcaccagca ccagcgtgga gcacctcatc
5643 181 atcaacccca acgccgcctt cgagaagttc aaggacaaac gcctgggcac cgatggcgtg
5644 241 gatttctccg accgcatcag caagagcaga accactggct atgagtctgg ggagtatgaa
5645 301 attctgggag aggggttggg tgccaaggag accccccagc agcggtacca gcggctgcag
5646 361 cacgaggtgc aggagctgat ccgtgatgtg gagcagatcc agagcgccgt gaaggagtcg
5647 421 gcggccgagg aagagctgac gcccatggct ttggcccggc agctggaggg gctgaagcag
5648 481 cagttggttt cgtgccatct gcagaagctg ttgggcccca ctgccgccat cgacttcgcg
5649 541 gaccctgagg gtgccttggc gaagcgcctg cagcagcagc tggaagtagc caagtgcaag
5650 601 aaggcagcgc cagcaaagag cccccccaaa gcccctgcgc ccaccactga cgcgctcacc
5651 661 ttcgaactgt tctggaggcc agagcaggac cagttctccc agactgccaa gatagcagag
5652 721 ctggagaagc gcctggcaca gctggaggcc atggtgcgct gtgagcctga cagccagaat
5653 781 cctctgctag ttgggctgaa gggcaccagc ctcgtggaga ccgtgcagat cctgcaggcc
5654 841 aaggttaaca tcctggacgc agctgtgctg gaccaagtgg aggcccggct gcagagcgtc
5655 901 ctggggaagg tgaatgagat tgccaagcac aaagcgattg tgcaggatgc cgacacgcag
5656 961 agcaagatcc atcaggtcta cgagatgatg cagcgctggg accacatggc cagcagtctg
5657 1021 cccgacgtgg tgcagcggct gctgacgctc cgggacctac atgagcaggc ctcacgattt
5658 1081 gtgcaggtgc tggtgcacct ggacaccaca cagcaggagg tggctgctgc tctgaaggat
5659 1141 aacactgtgc tgctggcaga ggtccagaag acaatgaagg agaacctggc tgttgtagag
5660 1201 gacaactttg ctgaagtaga ggcccgcatc aagcggctgc agaagtgaga gcagctctgc
5661 1261 gcccatctct gagggcccgc gttgttcagc cccctcgcct gatgccccct ggaatccccc
5662 1321 caaccccgca ggaaccagcc cctgctcctg tgtacctggc tgtgttcccc tctgctcccc
5663 1381 ccccctccat tccccccagg gccgtgtgac tgcctctcac acccagatga tccaaataaa
5664 //
5665
5666 LOCUS NM_204471 4742 bp mRNA linear VRT 04-JAN-2017
5667 DEFINITION Gallus gallus ubiquitin specific peptidase 7 (USP7), transcript
5668 variant 1, mRNA.
5669 ACCESSION NM_204471
5670 VERSION NM_204471.2
5671 KEYWORDS RefSeq.
5672 SOURCE Gallus gallus (chicken)
5673 ORGANISM Gallus gallus
5674 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5675 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5676 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5677 Phasianidae; Phasianinae; Gallus.
5678 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5679 preliminary review. The reference sequence was derived from
5680 AADN04000130.1.
5681 On Dec 29, 2016 this sequence version replaced gi:45383222.
5682
5683 Transcript Variant: This variant (1) represents the longer
5684 transcript and encodes the longer isoform (1).
5685
5686 Sequence Note: This RefSeq record was created from transcript and
5687 genomic sequence data to make the sequence consistent with the
5688 reference genome assembly. The genomic coordinates used for the
5689 transcript record were based on transcript alignments.
5690 COMPLETENESS: complete on the 3' end.
5691 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5692 1-240 AADN04000130.1 5955168-5955407
5693 241-345 AADN04000130.1 5978477-5978581
5694 346-544 AADN04000130.1 5983587-5983785
5695 545-683 AADN04000130.1 5985141-5985279
5696 684-772 AADN04000130.1 5988319-5988407
5697 773-881 AADN04000130.1 5989123-5989231
5698 882-1012 AADN04000130.1 5994344-5994474
5699 1013-1067 AADN04000130.1 5997303-5997357
5700 1068-1148 AADN04000130.1 5998393-5998473
5701 1149-1239 AADN04000130.1 5998561-5998651
5702 1240-1322 AADN04000130.1 5999425-5999507
5703 1323-1432 AADN04000130.1 6000453-6000562
5704 1433-1589 AADN04000130.1 6000975-6001131
5705 1590-1734 AADN04000130.1 6002153-6002297
5706 1735-1865 AADN04000130.1 6002875-6003005
5707 1866-2000 AADN04000130.1 6004074-6004208
5708 2001-2102 AADN04000130.1 6004362-6004463
5709 2103-2208 AADN04000130.1 6005189-6005294
5710 2209-2301 AADN04000130.1 6005686-6005778
5711 2302-2369 AADN04000130.1 6006631-6006698
5712 2370-2470 AADN04000130.1 6007274-6007374
5713 2471-2624 AADN04000130.1 6008728-6008881
5714 2625-2692 AADN04000130.1 6010185-6010252
5715 2693-2801 AADN04000130.1 6011375-6011483
5716 2802-2879 AADN04000130.1 6011582-6011659
5717 2880-2980 AADN04000130.1 6011958-6012058
5718 2981-3080 AADN04000130.1 6012505-6012604
5719 3081-3200 AADN04000130.1 6013395-6013514
5720 3201-3272 AADN04000130.1 6014776-6014847
5721 3273-3363 AADN04000130.1 6015728-6015818
5722 3364-4742 AADN04000130.1 6018426-6019804
5723 FEATURES Location/Qualifiers
5724 source 1..4742
5725 /organism="Gallus gallus"
5726 /mol_type="mRNA"
5727 /db_xref="taxon:9031"
5728 /chromosome="14"
5729 /map="14"
5730 /breed="Red Jungle Fowl"
5731 gene 1..4742
5732 /gene="USP7"
5733 /gene_synonym="UBP"
5734 /note="ubiquitin specific peptidase 7"
5735 /db_xref="CGNC:5523"
5736 /db_xref="GeneID:395126"
5737 CDS 162..3470
5738 /gene="USP7"
5739 /gene_synonym="UBP"
5740 /EC_number="3.4.19.12"
5741 /note="isoform 1 is encoded by transcript variant 1;
5742 ubiquitin carboxyl-terminal hydrolase 7; ubiquitin
5743 specific protease 7; ubiquitin thioesterase 7; ubiquitin
5744 specific peptidase 7 (herpes virus-associated);
5745 deubiquitinating enzyme 7; ubiquitin-specific-processing
5746 protease 7"
5747 /codon_start=1
5748 /product="ubiquitin carboxyl-terminal hydrolase 7 isoform
5749 1"
5750 /protein_id="NP_989802.2"
5751 /db_xref="CGNC:5523"
5752 /db_xref="GeneID:395126"
5753 /translation="MNHHQQQQHQKPGEQQLSEPEDMEMEAGDADDPPRITQNPVING
5754 NVAMADGHNNTEEDMEDDTSWRSEATFQFTVERFNRLSESVLSPPCFVRNLPWKIMVM
5755 PRLYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYKDDEKSFSRRISHLFFH
5756 KENDWGFSNFMAWSEVTDPEKGFIEEDKVTFEVYVQADAPHGVAWDSKKHTGYVGLKN
5757 QGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGT
5758 KKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQC
5759 KHVDYRSERIEDYYDIQLSIKGKKNIFESFIDYVAVEQLDGDNKYDAGEHGLQEAEKG
5760 VKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYIL
5761 HAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVR
5762 HCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQ
5763 VQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWP
5764 MQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPEMAATGATLPKFDKD
5765 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCERAGFPQETNLILYEEVKP
5766 NLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIF
5767 CDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHN
5768 YEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITVYPDK
5769 HGCVRDLLEECKKVVELSEKGSGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI
5770 EEIPLDQVDIDKENEMLITVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQTMLDI
5771 QEKEFEKFKFAIVMMGRHQYLNEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR
5772 SRYTYLEKAIKIHN"
5773 misc_feature 318..785
5774 /gene="USP7"
5775 /gene_synonym="UBP"
5776 /experiment="experimental evidence, no additional details
5777 recorded"
5778 /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
5779 Region: Interaction with p53/TP53.
5780 {ECO:0000250|UniProtKB:Q93009}"
5781 misc_feature 369..776
5782 /gene="USP7"
5783 /gene_synonym="UBP"
5784 /experiment="experimental evidence, no additional details
5785 recorded"
5786 /note="propagated from UniProtKB/Swiss-Prot (Q6U7I1.1);
5787 Region: Necessary for nuclear localization.
5788 {ECO:0000250|UniProtKB:Q93009}"
5789 ORIGIN
5790 1 ccctgcccgc cggagcccag ccgcagcccc ccgaggcggg cgcccaaccc cggcagctgc
5791 61 ccgtgccccg ccgctcctcc gccccgtccc ctcccgacgc agccccgcag ccccccacgg
5792 121 gaaaggccca ggccgccgcc gagcccgagt cccatcccga catgaaccac catcagcagc
5793 181 agcagcacca gaagcccggg gagcagcagc tgagcgagcc cgaggacatg gagatggaag
5794 241 ctggagatgc agatgatcct ccaagaatta ctcaaaaccc tgtcattaat gggaatgtag
5795 301 caatggctga tggacacaac aacactgaag aagacatgga agatgataca agttggcggt
5796 361 cagaggctac ctttcagttc acagtcgaac gcttcaacag attgagtgag tcagttctca
5797 421 gccctccctg ctttgtacgg aatttgccat ggaagatcat ggtcatgcca cgactctacc
5798 481 cagacagacc tcaccaaaaa agcgtaggat tcttcctcca gtgcaatgca gaatctgatt
5799 541 ccacgtcatg gtcttgtcat gcacaagcag ttctcaagat aataaactac aaagatgatg
5800 601 aaaaatcatt cagtcgtcgt attagtcact tgttctttca taaggaaaat gactggggct
5801 661 tttccaactt tatggcctgg agtgaagtta ctgatcctga aaagggcttt atagaagagg
5802 721 acaaggttac ttttgaagtc tatgttcaag cagatgctcc ccatggagtg gcgtgggatt
5803 781 caaagaagca cacaggatat gttggcttaa agaaccaggg agcaacttgt tacatgaaca
5804 841 gtttgttaca gactttattt ttcacaaatc aactacgaaa ggctgtgtac atgatgccca
5805 901 ctgaaggaga tgattcatcc aaaagtgttc ctttagcatt gcaaagagtg ttttatgagc
5806 961 tgcaacatag tgacaaacca gttggaacta aaaagctaac aaagtctttt gggtgggaaa
5807 1021 ctttagacag cttcatgcaa catgatgtcc aggagttatg tcgagtgctg cttgataacg
5808 1081 tggaaaataa aatgaaaggc acatgtgtag aaggcactat tcctaaattg ttcagaggaa
5809 1141 agatggtgtc ttatatccaa tgcaaacatg tagactatcg atctgaacga atagaagatt
5810 1201 attatgatat ccagctaagt ataaagggaa agaaaaatat ttttgagtcc ttcattgact
5811 1261 atgttgcagt ggagcagttg gatggtgata acaagtatga tgcaggagag catggcttgc
5812 1321 aggaggcaga gaaaggtgtg aagttcctaa cgttgccacc agtactacat ctgcagctca
5813 1381 tgagatttat gtatgatcct cagactgatc aaaacatcaa gataaatgat aggtttgagt
5814 1441 ttcctgaaca gttgccacta gatgaatttt tgcaaaaaac agatcctaaa gatccagcaa
5815 1501 attacattct tcatgcagtt ctagtacaca gtggagataa ccatggtgga cattatgttg
5816 1561 tttacttaaa tccaaagggt gatggaaaat ggtgtaaatt tgatgatgac gttgtatcaa
5817 1621 gatgtaccaa ggaagaggcg attgaacaca actatggagg ccacgacgac gacttatctg
5818 1681 tacggcactg cactaacgcg tacatgttgg tttacatcag ggaatcgaaa ttaagtgaag
5819 1741 tcttgcagcc tgttacggac catgatattc ctcagcaact tgtggaaagg ctacaagaag
5820 1801 agaaaagaat agaggctcag aagaggaagg agaggcagga agctcacctc tacatgcaag
5821 1861 tgcagatagt agcagaggat cagttctgcg gccaccaagg caatgacatg tatgatgaag
5822 1921 aaaaagtgaa atacaccgtt ttcaaagtat taaaaaactc cacgttgaca gaatttgttc
5823 1981 aaaacctctc tcaaacaatg ggatttcccc aggatcagat cagattatgg ccaatgcaag
5824 2041 ctagaagtaa tggaacaaaa agacctgcaa tgttagataa tgaagcagat ggcaataaaa
5825 2101 caatgattga gctcagcgac aatgaaaatc catggacaat atttttggaa acagtagatc
5826 2161 cagagatggc tgctactgga gcaacattac ccaagtttga taaagatcat gatgtaatgt
5827 2221 tgtttctgaa gatgtatgat ccgaaaactc ggagtttgaa ttattgtgga catatctaca
5828 2281 cacctatatc ctgtaaaata cgtgacttgc ttccagttat gtgtgagaga gcaggatttc
5829 2341 cacaagaaac taaccttatc ctctatgagg aagttaaacc caatttaaca gaaaggattc
5830 2401 aagactatga tgtgtctctt gataaagctc ttgatgaact catggatggt gacatcatag
5831 2461 tgtttcagaa ggatgaccca gaaaacgata acagtgagct gccaacagct aaggaatact
5832 2521 tcagagacct ctatcatcgt gtggatgtca ttttctgtga taaaaccatc cccaacgacc
5833 2581 ctggttttgt tgttactttg tccaatagga tgaattactt tcaggttgca aagacagttg
5834 2641 cacaaagact taatacagat ccaatgctat tacagttttt caagtctcaa ggttataggg
5835 2701 acggccctgg taatcccctt aggcacaatt atgaaggtac tttaagagat cttctgcagt
5836 2761 tcttcaagcc taggcaacct aaaaagcttt actatcaaca gctcaaaatg aaaataactg
5837 2821 attttgaaaa cagaagaagt tttaaatgca tatggctaaa tagccaattt agggaagagg
5838 2881 aaataacagt atatccagat aagcatgggt gtgtgcggga cctcttagaa gaatgtaaaa
5839 2941 aagttgtaga gctctctgaa aaaggttcag ggaaattaag gctgctagaa attgtaagtt
5840 3001 acaaaataat tggcgtccat caggaagatg agctgttaga gtgtttgtca cccgcaacaa
5841 3061 gtcgaacgtt tcgaatagag gaaattcctc tggaccaggt agatatagat aaagaaaatg
5842 3121 agatgctaat cacagtggca catttccaca aggaggtttt tgggacattt ggaattccgt
5843 3181 tcttgctgag gatacaccag ggcgaacact tcagagaggt tatgaagcgg attcagacaa
5844 3241 tgctggacat acaggaaaaa gaatttgaaa agtttaaatt tgcaattgta atgatgggcc
5845 3301 gacaccaata tctcaatgaa gatgagtatg aagtgaactt gaaagatttt gagccccaac
5846 3361 caggcaacat gtctcatcca aggccgtggc tagggcttga ccatttcaat aaagccccaa
5847 3421 agagaagtcg ctacacttac cttgaaaaag ctattaaaat ccataactga cttaataaac
5848 3481 cagattgtcg aggcaaggga caaaataagt gtgtgtgtgc acctttttaa caactgtaga
5849 3541 actttggtac acgtgcacta tatctgaagt cttcagcaag aggatttgct gctgatgtta
5850 3601 attttatttt gttgaggctg ttcagtttgg cttctctgta tctattgact gccctttttg
5851 3661 agcaaaatga aggtgttttt ataaagcttg gatgccaatg agagttattt tatggtaaac
5852 3721 gtaatgcaag gcaattgtca gcataatgag ggaagagttt agtagaacaa ttgacattgg
5853 3781 caaaatattt gtctgtagta cgtttataga tggcataagc tggctggctg cctttcctgg
5854 3841 tatggtgttc accatcactg cagctagtaa gtcttatgtt tagactcaca tcagatttat
5855 3901 ttccttcagt tatactttaa atgacatttt tgtgcatttg taaatgcaaa aaactcacat
5856 3961 catcaataaa tagcaatctc tacttcattg tgtacattgt tggcacttat ttgggatttt
5857 4021 tgtctcctcc agctgcatag aatctttttt aataaactag ttttcattta atttagtcac
5858 4081 tacttcgcat cccgttttgc caagcggatg ccctgactcc tataatgaga tatttgggtc
5859 4141 tttttatgaa aatttcaacc attgttgaat acagttgcaa tttattatgc catcttctgg
5860 4201 cagatagaat gacactcaga gttggcaaaa gcaagtgaaa ggattataaa tatcattaat
5861 4261 ttagttaacg tgggaagaga cggggaaaac acgagaaata gccttttagc acagaggggc
5862 4321 atgctcacta gtgtttagta agctgttgac tttgtataaa aaaggaggaa aaaaaaagaa
5863 4381 aaaaaagaag aaatgaaatt gtatatttaa tgaatgaaca tgtacaattt aacacttgga
5864 4441 ggataatttt gttgggtgag tctgcaagtg aatttcactg atgttgatat tcattgtgtg
5865 4501 tagttttctt tcagtcccca gactgcttcc ttttattttg gagctaatgc cagccgcgtg
5866 4561 tctagttttg agtgcagtaa agatagaatc agcaattcac acttaacttt acattctttt
5867 4621 ccagtatttt attttgtttc tgtagctgca gtgtacaaca actcttcctg tatattgcct
5868 4681 ttttttgctg gaaaatgttg tatgttgaat aaaattttct ataaaatttt ccttcggtga
5869 4741 gt
5870 //
5871
5872 LOCUS NM_001006211 3002 bp mRNA linear VRT 04-JAN-2017
5873 DEFINITION Gallus gallus SBDS ribosome assembly guanine nucleotide exchange
5874 factor (SBDS), mRNA.
5875 ACCESSION NM_001006211 XM_415725
5876 VERSION NM_001006211.2
5877 KEYWORDS RefSeq.
5878 SOURCE Gallus gallus (chicken)
5879 ORGANISM Gallus gallus
5880 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
5881 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
5882 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
5883 Phasianidae; Phasianinae; Gallus.
5884 REFERENCE 1 (bases 1 to 3002)
5885 AUTHORS Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
5886 TITLE Splenic gene expression profiling in White Leghorn layer inoculated
5887 with the Salmonella enterica serovar Enteritidis
5888 JOURNAL Anim. Genet. 46 (6), 617-626 (2015)
5889 PUBMED 26358731
5890 REFERENCE 2 (bases 1 to 3002)
5891 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
5892 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
5893 P, Hayashizaki Y and Buerstedde JM.
5894 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
5895 gene function analysis
5896 JOURNAL Genome Biol. 6 (1), R6 (2005)
5897 PUBMED 15642098
5898 COMMENT VALIDATED REFSEQ: This record has undergone validation or
5899 preliminary review. The reference sequence was derived from
5900 AADN04000064.1.
5901 On Dec 21, 2016 this sequence version replaced gi:57525275.
5902
5903 Sequence Note: The RefSeq transcript and protein were derived from
5904 genomic sequence to make the sequence consistent with the reference
5905 genome assembly. The genomic coordinates used for the transcript
5906 record were based on alignments.
5907
5908 ##Evidence-Data-START##
5909 Transcript exon combination :: AJ720650.1, HAEL01010610.1
5910 [ECO:0000332]
5911 RNAseq introns :: single sample supports all introns
5912 SAMEA2201360, SAMEA2201368
5913 [ECO:0000348]
5914 ##Evidence-Data-END##
5915 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
5916 1-167 AADN04000064.1 41929-42095 c
5917 168-297 AADN04000064.1 41185-41314 c
5918 298-498 AADN04000064.1 40398-40598 c
5919 499-663 AADN04000064.1 39997-40161 c
5920 664-3002 AADN04000064.1 37075-39413 c
5921 FEATURES Location/Qualifiers
5922 source 1..3002
5923 /organism="Gallus gallus"
5924 /mol_type="mRNA"
5925 /db_xref="taxon:9031"
5926 /chromosome="19"
5927 /map="19"
5928 /breed="Red Jungle Fowl"
5929 gene 1..3002
5930 /gene="SBDS"
5931 /note="SBDS ribosome assembly guanine nucleotide exchange
5932 factor"
5933 /db_xref="CGNC:749"
5934 /db_xref="GeneID:417477"
5935 CDS 40..792
5936 /gene="SBDS"
5937 /note="shwachman-Bodian-Diamond syndrome protein homolog"
5938 /codon_start=1
5939 /product="ribosome maturation protein SBDS"
5940 /protein_id="NP_001006211.1"
5941 /db_xref="CGNC:749"
5942 /db_xref="GeneID:417477"
5943 /translation="MSIFTPTNQIRLTNVAVVRARRAGKRFEIACYRNKVMGWRSGAE
5944 KDIDEVLQTHTVFVNVSKGQVAKKEDLVRAFGTDDQTEICKVILSKGELQVSDKERQT
5945 QLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIRQ
5946 LKETMQIERAHMRLRFILPVKEGKKLKEKLKPLIKVIENEDFHDQLEIVCLIDPGCFR
5947 EIDELIRSETKGKGTLEVLSLKDVEEGDEKLE"
5948 misc_feature 43..45
5949 /gene="SBDS"
5950 /experiment="experimental evidence, no additional details
5951 recorded"
5952 /note="N-acetylserine. {ECO:0000250}; propagated from
5953 UniProtKB/Swiss-Prot (Q5ZIY4.1); acetylation site"
5954 ORIGIN
5955 1 gtgagtgacg cgggggtgca gcccggcaga gctgccgcca tgtccatctt cacccccacc
5956 61 aaccagatcc gcctcaccaa tgtggccgtg gtgcgggccc ggcgcgccgg aaagcgtttc
5957 121 gagatcgcct gttaccgcaa caaagtcatg ggctggcgta gcggagcgga gaaggatatt
5958 181 gacgaggtcc tgcagaccca cacagtgttt gtcaatgttt ccaaaggcca ggtggcaaag
5959 241 aaggaagacc tcgtccgggc atttggaaca gatgaccaaa cagaaatctg taaagtgatt
5960 301 ctatcaaaag gggagctgca ggtatcagac aaagaacgac agacacagct ggagcagatg
5961 361 tttagggaca ttgcaactat tgtggctgac aaatgtgtga atcctgagac aaagaggccg
5962 421 tacactgtaa tccttataga aagagccatg aaggatattc actactctgt caaaccaaac
5963 481 aagagcacta agcaacaggc actggaagtg atcagacagt taaaggagac catgcaaatt
5964 541 gaacgtgctc acatgaggtt acgatttatt cttccagtaa aggaggggaa aaaactgaaa
5965 601 gagaagctca agccactgat taaagttatt gagaatgaag actttcatga tcagttagaa
5966 661 attgtgtgcc ttattgaccc gggctgcttc agagagattg atgagctgat ccggtctgag
5967 721 accaaaggga aaggaacgct ggaagtgctc agtctgaaag atgtggagga aggagatgaa
5968 781 aagcttgaat aacaaaaacc cttctggagc actgcgacta cttcaacaat gtttaactga
5969 841 cactagccac tcttttctgt ttggccttct tgtttttctc caacctcttg ctgccaaata
5970 901 ccttctgaca cactaacccg ttgggatttt tccatgcagt gtgtttttta atcatttttc
5971 961 acttgcttgg tttgcaggtg atttgcctgt aggaacattt tgtgtcagag ttgcactagt
5972 1021 gagaattgag ttaagacttg atagggaatt tagctttggt gaatgttagg ggttgctgat
5973 1081 ggagagtgtt tgactgatat ggtgccaatc acttttgctt tgagttgtca gtgttgagtg
5974 1141 gaagactgta tgggccactg aggggtgggt gctgtacgtg aggagagaga cctttgggaa
5975 1201 agagagatac attttcactt tcagacaagt gcaaagtgtg catcgcatct gctgatctct
5976 1261 tggcagcatg aaaactgatg tagacatccg taattggctg cttaatcatt acagtagttt
5977 1321 aaaggaccat tcttgtatat ttccttcact gggtataaca gtacttgcta acttagaaaa
5978 1381 aatgttcacc aaataattta ttcataaaat atatttagct acattggtaa aaaaaaaaaa
5979 1441 aataataatt atcatctatt tatgtattac agatacagaa agaaataact atttttgtta
5980 1501 tagcatagga gctatccctg gctgcagtgg tgcatttgga ggctgacggc gtaggctgca
5981 1561 tttctgagct gttgtcattc atgggatgaa atgaagcgga tctctcccag acagtggcct
5982 1621 ctggccattg tgctagacgg gcttttgttg ggccctcatt ccctcgtggt agctgtcctt
5983 1681 tatcctgtgg ctttttatgc ttctttctag cacagcattt ccagccagct cccgaggcac
5984 1741 agcattctgt atagttttgt taaggcttgt ttcagctgtg cgaaacgaat gctttcaagt
5985 1801 ttaactcggg gatctcaaac aagaggggaa aagaggacag aagctggaaa gatactaaaa
5986 1861 atacaagaaa aatacaggcc cggtacatac ccctgggtgc ctgaaggcta agccagaagg
5987 1921 agtttaaggg gagcctttgg tgttcatgtg cctgtttcca tgctgataat acacagcgaa
5988 1981 tcaggatttg caagctggcc aaccactaga tctctgcttc acatgaatat gttatgttca
5989 2041 ttccttgctg cgtaatttta gagtaaatca ccttttatat gacaattaaa cagagctctg
5990 2101 gtttgtactc ttcacatggc cttttccttt gtaccactaa cagatgtgag ttttctaggg
5991 2161 ttgacgtggg aagatccgaa gtcaaccaga gaaagatttg aaatgttaga tgcagaggaa
5992 2221 cctaggtcct tagtcaggga cttcctcttt gaagttgcag cctgttgaca agagcttgtg
5993 2281 caaggttgga ttcaatttct ttagccacgt tttgggagga cttgccactg tggagcctga
5994 2341 gttttgctga agggttgtga aatggagaat cttgaactac ttaatcaatt ttaaaatgct
5995 2401 ttcctgttgc ccctgagata atctgctgtc ctgtttaaat gctgcctagg aaagtttggg
5996 2461 ggtgtaatca gtgcatttgt gaggtggaca aagtttaaac atggatatct gtacatgtgt
5997 2521 ggataggcag gcaagtttcc tcatatgtac aagcccttaa ctgcttgtct ttcaaatggc
5998 2581 catctcctca tgcattattg atgaaaagga tggtaatgct ggtatttaac ctgtcactgg
5999 2641 cacttagaat taagatgtaa tccataaatc tgcaaaggag acgctgagca agaacctcac
6000 2701 aacattgtgt tggtttattt ggtttcacaa ctctgtaatt tctttggttt ttatgcactt
6001 2761 agagcccaat aggatggctg caggttaagg accttgagtt acagaaacat aatctaagct
6002 2821 gattcatgag cttggtgcta ggaagtcagt ttccatgtag tctttttcta caaatgaagt
6003 2881 gttaaggatt ttctctggta gagggagctt gattttattt ataaacatgc ttgcatttct
6004 2941 tgtcatgttt gtatttcagc aagaacggat ggtaagcatc aaaataaatc tcagcattgg
6005 3001 ca
6006 //
6007
6008 LOCUS NM_001318995 976 bp mRNA linear VRT 04-JAN-2017
6009 DEFINITION Gallus gallus Major histocompatibility complex class II beta chain
6010 BLB2, (similar to HLA class II, D beta chain) (BLB2), mRNA.
6011 ACCESSION NM_001318995 NM_001044694 XM_015295014
6012 VERSION NM_001318995.2
6013 KEYWORDS RefSeq.
6014 SOURCE Gallus gallus (chicken)
6015 ORGANISM Gallus gallus
6016 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6017 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6018 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6019 Phasianidae; Phasianinae; Gallus.
6020 REFERENCE 1 (bases 1 to 976)
6021 AUTHORS Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
6022 TITLE Splenic gene expression profiling in White Leghorn layer inoculated
6023 with the Salmonella enterica serovar Enteritidis
6024 JOURNAL Anim. Genet. 46 (6), 617-626 (2015)
6025 PUBMED 26358731
6026 REFERENCE 2 (bases 1 to 976)
6027 AUTHORS Chen F, Pan L, Chao W, Dai Y and Yu W.
6028 TITLE Character of chicken polymorphic major histocompatibility complex
6029 class II alleles of 3 Chinese local breeds
6030 JOURNAL Poult. Sci. 91 (5), 1097-1104 (2012)
6031 PUBMED 22499866
6032 REFERENCE 3 (bases 1 to 976)
6033 AUTHORS Hosomichi K, Miller MM, Goto RM, Wang Y, Suzuki S, Kulski JK,
6034 Nishibori M, Inoko H, Hanzawa K and Shiina T.
6035 TITLE Contribution of mutation, recombination, and gene conversion to
6036 chicken MHC-B haplotype diversity
6037 JOURNAL J. Immunol. 181 (5), 3393-3399 (2008)
6038 PUBMED 18714011
6039 REMARK Erratum:[J Immunol. 2010 May 1;184(9):5415]
6040 REFERENCE 4 (bases 1 to 976)
6041 AUTHORS Worley K, Gillingham M, Jensen P, Kennedy LJ, Pizzari T, Kaufman J
6042 and Richardson DS.
6043 TITLE Single locus typing of MHC class I and class II B loci in a
6044 population of red jungle fowl
6045 JOURNAL Immunogenetics 60 (5), 233-247 (2008)
6046 PUBMED 18389232
6047 REFERENCE 5 (bases 1 to 976)
6048 AUTHORS Xu R, Li K, Chen G, Xu H, Qiang B, Li C and Liu B.
6049 TITLE Characterization of genetic polymorphism of novel MHC B-LB II
6050 alleles in Chinese indigenous chickens
6051 JOURNAL J Genet Genomics 34 (2), 109-118 (2007)
6052 PUBMED 17469783
6053 REFERENCE 6 (bases 1 to 976)
6054 AUTHORS Li L, Johnson LW, Livant EJ and Ewald SJ.
6055 TITLE The MHC of a broiler chicken line: serology, B-G genotypes, and
6056 B-F/B-LB sequences
6057 JOURNAL Immunogenetics 49 (3), 215-224 (1999)
6058 PUBMED 9914335
6059 REFERENCE 7 (bases 1 to 976)
6060 AUTHORS Pharr GT, Dodgson JB, Hunt HD and Bacon LD.
6061 TITLE Class II MHC cDNAs in 15I5 B-congenic chickens
6062 JOURNAL Immunogenetics 47 (5), 350-354 (1998)
6063 PUBMED 9510552
6064 REFERENCE 8 (bases 1 to 976)
6065 AUTHORS Li L, Johnson LW and Ewald SJ.
6066 TITLE Molecular characterization of major histocompatibility complex (B)
6067 haplotypes in broiler chickens
6068 JOURNAL Anim. Genet. 28 (4), 258-267 (1997)
6069 PUBMED 9345722
6070 REFERENCE 9 (bases 1 to 976)
6071 AUTHORS Sung AM, Nordskog AW, Lamont SJ and Warner CM.
6072 TITLE Isolation and characterization of cDNA clones for chicken major
6073 histocompatibility complex class II molecules
6074 JOURNAL Anim. Genet. 24 (4), 227-233 (1993)
6075 PUBMED 8239067
6076 REFERENCE 10 (bases 1 to 976)
6077 AUTHORS Xu YX, Pitcovski J, Peterson L, Auffray C, Bourlet Y, Gerndt BM,
6078 Nordskog AW, Lamont SJ and Warner CM.
6079 TITLE Isolation and characterization of three class II MHC genomic clones
6080 from the chicken
6081 JOURNAL J. Immunol. 142 (6), 2122-2132 (1989)
6082 PUBMED 2493505
6083 COMMENT VALIDATED REFSEQ: This record has undergone validation or
6084 preliminary review. The reference sequence was derived from
6085 AADN04000554.1.
6086 On Jul 14, 2016 this sequence version replaced gi:974987246.
6087
6088 Sequence Note: The RefSeq transcript and protein were derived from
6089 genomic sequence to make the sequence consistent with the reference
6090 genome assembly. The genomic coordinates used for the transcript
6091 record were based on alignments.
6092
6093 Publication Note: This RefSeq record includes a subset of the
6094 publications that are available for this gene. Please see the Gene
6095 record to access additional publications.
6096
6097 ##Evidence-Data-START##
6098 RNAseq introns :: single sample supports all introns SAMEA2201358,
6099 SAMEA2201376 [ECO:0000348]
6100 ##Evidence-Data-END##
6101 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
6102 1-125 AADN04000554.1 96847-96971
6103 126-395 AADN04000554.1 97178-97447
6104 396-677 AADN04000554.1 97534-97815
6105 678-788 AADN04000554.1 97898-98008
6106 789-812 AADN04000554.1 98102-98125
6107 813-976 AADN04000554.1 98219-98382
6108 FEATURES Location/Qualifiers
6109 source 1..976
6110 /organism="Gallus gallus"
6111 /mol_type="mRNA"
6112 /db_xref="taxon:9031"
6113 /chromosome="16"
6114 /map="16"
6115 /breed="Red Jungle Fowl"
6116 gene 1..976
6117 /gene="BLB2"
6118 /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
6119 S19"
6120 /note="Major histocompatibility complex class II beta
6121 chain BLB2, (similar to HLA class II, D beta chain)"
6122 /db_xref="CGNC:54352"
6123 /db_xref="GeneID:101747454"
6124 CDS 35..826
6125 /gene="BLB2"
6126 /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
6127 S19"
6128 /note="major histocompatibility complex class II B; MHC
6129 class II beta chain 2; B-LB21 major; MHC Class II beta 1
6130 and 2 domains; major histocompatibility class II antigen
6131 B-L beta; MHC class II antigen beta chain; B-L beta chain;
6132 MHC class II beta 1 domain; MHC class II antigen B-F minor
6133 heavy chain; BLB major; B-L beta minor; Bl-Beta II
6134 protein; MHC class II B-L beta chain"
6135 /codon_start=1
6136 /product="uncharacterized protein LOC101747454 precursor"
6137 /protein_id="NP_001305924.2"
6138 /db_xref="CGNC:54352"
6139 /db_xref="GeneID:101747454"
6140 /translation="MGSGSVPAAGAVLVALLALGARPAAGTRPSAFFFYGKIGECHYL
6141 NGTERVRFLDRQIYNRQQFAHFDSDVGKFVADTPLGERQAEYWNSNAELLENLMNEVD
6142 RVCRHNYGILESFTVQRSVEPKVRVSALQSGSLPETDRLACYVTGFYPPEIEVKWFLN
6143 GREETERVVSTDVMQNGDWTYQVLVVLETVPRRGDSYVCRVEHASLRQPISQAWEPPA
6144 DAGRSKLLTGVGGFVLGLVFLALGLFVFLRGQKGRPVAAAPGMLN"
6145 sig_peptide 35..112
6146 /gene="BLB2"
6147 /gene_synonym="B-L; B-LB; B-LB2; B-LB21; B-LBII; GSP-BLB2;
6148 S19"
6149 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
6150 ORIGIN
6151 1 gtgccgggtc ccccatcgtc cggcggcagc agccatgggg agcgggagcg tcccggcggc
6152 61 gggggccgtg ctggtggcac tgctggcgct gggagcccgg ccggccgccg gcacgcggcc
6153 121 ctcggcgttc ttcttctacg gtaagatagg tgagtgccac tacctgaacg gcaccgagcg
6154 181 ggtgaggttt ctggacaggc aaatctacaa ccggcagcag ttcgcgcact tcgacagcga
6155 241 cgtggggaaa tttgtggccg atacaccgct gggtgagcgt caagctgaat actggaacag
6156 301 caacgccgag cttctggaga acctaatgaa tgaagtggac agggtctgcc ggcacaacta
6157 361 cgggattctg gagtccttca cggtgcagag gagcgtggag cccaaggtga gggtctcggc
6158 421 gctgcagtcg ggctccctgc ccgaaaccga ccgtctggcg tgctacgtga cgggcttcta
6159 481 cccgccggag atcgaggtga agtggttcct gaacgggcgg gaggagacgg agcgcgtggt
6160 541 gtccacggac gtgatgcaga acggggactg gacgtaccag gtgctggtgg tgctggagac
6161 601 cgtcccgcgg cgcggggaca gctacgtgtg ccgggtggag cacgccagcc tgcggcagcc
6162 661 catcagccag gcgtgggagc cgccggcgga cgcgggcagg agcaagctgc tgacgggcgt
6163 721 ggggggcttc gtgctggggc tcgtcttcct ggcgctgggg ctcttcgtgt tcctgcgcgg
6164 781 tcagaaaggg cgccccgtcg ccgccgctcc agggatgctg aattagctgc tgccccgccg
6165 841 agccgctgca cccgcacccc ccgctctccc ggccgtcgcc tcggctctcc ctcgggctgc
6166 901 caccgcgtcc gttggagatg tcgccacgat gcacgcttcg tccccatcct aataaacgcg
6167 961 ctgactttga ccccgc
6168 //
6169
6170 LOCUS NM_001322804 2731 bp mRNA linear VRT 04-JAN-2017
6171 DEFINITION Gallus gallus microsomal triglyceride transfer protein-like
6172 (MTTPL), mRNA.
6173 ACCESSION NM_001322804 XM_001232866
6174 VERSION NM_001322804.1
6175 KEYWORDS RefSeq.
6176 SOURCE Gallus gallus (chicken)
6177 ORGANISM Gallus gallus
6178 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6179 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6180 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6181 Phasianidae; Phasianinae; Gallus.
6182 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
6183 NCBI review. The reference sequence was derived from KT899704.1.
6184 On Apr 13, 2016 this sequence version replaced gi:971401807.
6185
6186 ##Evidence-Data-START##
6187 Transcript exon combination :: KT899704.1 [ECO:0000332]
6188 RNAseq introns :: single sample supports all introns
6189 SAMEA2201376 [ECO:0000348]
6190 ##Evidence-Data-END##
6191 FEATURES Location/Qualifiers
6192 source 1..2731
6193 /organism="Gallus gallus"
6194 /mol_type="mRNA"
6195 /db_xref="taxon:9031"
6196 /chromosome="6"
6197 /map="6"
6198 /breed="Hy-Line Brown"
6199 gene 1..2731
6200 /gene="MTTPL"
6201 /note="microsomal triglyceride transfer protein-like"
6202 /db_xref="CGNC:55368"
6203 /db_xref="GeneID:769580"
6204 CDS 30..2675
6205 /gene="MTTPL"
6206 /note="microsomal triglyceride transfer protein large
6207 subunit-like protein"
6208 /codon_start=1
6209 /product="microsomal triglyceride transfer protein-like
6210 precursor"
6211 /protein_id="NP_001309733.1"
6212 /db_xref="CGNC:55368"
6213 /db_xref="GeneID:769580"
6214 /translation="MGQWALWGYICLLCCSFLSTAKGSPWVLSFQPGMLYQYHYALAM
6215 QLGPVAGLSPSGGWLQAQAVVRIRQLHRDPSGDELLQVQIQDLKAQQKPEGPEGPPMD
6216 IALNEEVQSELQKPVFISWSSGKIKALHGDETEGTLITNLKRGVVSLLQLQPHASTIV
6217 EEDASGSCQVTYTVSNHSIVKTKDLLSCTKPKMGYASPNKMFGIQWQPSSRSLYVVKD
6218 SLLQSVLAEESHMLSLVLRSTTGVKISSRQELKLVSSTPSPAVAAEESLENVLASIEG
6219 QHQPLAIASLPFRRGCTHCPSLTAYLKTFDSQQAKMDISKAATTWQFQRFIQMLRSAK
6220 KRDVLQLLKRAPEKMLPFVVEAAVAAQSVPALAALSDFLDFSKEPGSLLETFLYAAAF
6221 SPRPTKELLRLVLDKLDGKQMAPEVRDTGMVALGSLVGKLCQQQLCGLQEVKHGMETI
6222 LTGLRSAEKEHEAVIHLLALGNAQLPSTIPTLLEHAEKGPTAVAAAAISALRQFRAWH
6223 ITSEVKRAMRRIFHEKRKSYEKTCRLAAAEILLDNTPLSMDVINILLAAHHLGTEAAT
6224 FLLLKVQSSLHANHHPARKIMSDIMRDPRINNYNHFSKAGISSSFSGPLTATKELLST
6225 FGLDLLFLEGGFLRKSVSDFSLLSQDWHLRAAQVTIEAQGMESMLGENTLEGEEGPEL
6226 TAGMSAIFFDVQLRPIIFFKGYTDLMAKVLLSSGEPTSVVKGNLLLMDHHQVIPLQSG
6227 LQAVVKLQGGLGLDISANVDVNIWEQELKTSVDTRGSLTIDFQAELDTPFLHTTLRSQ
6228 TEAETSIYFDTILRFSSSPVLMCLQLREDQVPYREVFTISTSAGNQSSTIRKGRQGTV
6229 PAQEFALHQANSEMCHLLLTAEEGA"
6230 sig_peptide 30..98
6231 /gene="MTTPL"
6232 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
6233 ORIGIN
6234 1 tctcccttcc ccacctcccg gagcccagca tggggcagtg ggcactttgg ggctacatct
6235 61 gtctgctctg ctgctccttt ctgagcacag ccaaaggcag cccatgggtg ctttccttcc
6236 121 agccgggcat gctgtaccag taccactatg ccctggccat gcagctgggc cccgtggctg
6237 181 gcctgtcccc gtctgggggg tggctgcagg cacaggctgt ggtcaggatt cgtcagctcc
6238 241 acagggaccc cagcggggat gagctgctcc aggtgcagat ccaagacctg aaagcccagc
6239 301 agaagcctga gggtcctgaa ggtcctccca tggacattgc actgaatgag gaggtgcagt
6240 361 cagaactcca aaagccagtt ttcatctcct ggagcagcgg gaagatcaaa gccctgcatg
6241 421 gggatgaaac agaaggcacc ctgatcacca acctgaagcg aggtgttgtc agcctgctcc
6242 481 agctccagcc ccacgccagc accatcgtgg aggaagacgc ctctgggagc tgccaggtca
6243 541 catacaccgt gtccaaccac tccattgtaa agacaaaaga tctcctcagc tgcacaaagc
6244 601 caaaaatggg atatgcctct ccgaacaaaa tgtttggcat ccagtggcag ccctccagca
6245 661 gaagcctgta tgtggtgaag gacagcctgc tgcagtcggt gctggcagag gagagccaca
6246 721 tgctgtccct agtcttgagg tccaccactg gtgtcaaaat cagctcaagg caggagctca
6247 781 agctggtgtc ttcaacgccc agtcctgcag tggcagctga agagagcctt gagaacgtgc
6248 841 tggctagcat agagggacag caccagcccc tggccatagc cagcctgccc ttcaggaggg
6249 901 gctgcaccca ctgcccttcg ctgacggcct atctgaagac ctttgatagc cagcaagcca
6250 961 aaatggacat ctcaaaggct gcaactacgt ggcagttcca gaggttcatc cagatgctgc
6251 1021 gcagtgccaa gaagagagat gtgctgcagc tgctgaagag agcacctgag aagatgctac
6252 1081 cctttgtggt ggaggcagcg gtggccgcgc agtcggtgcc agccttggca gctctctcag
6253 1141 acttcctgga tttcagcaag gagcccgggt ccctactgga gacgttcctc tatgcagcag
6254 1201 ccttctctcc ccgacctaca aaagagctgc tgcgtttggt gctggacaag ctggatggga
6255 1261 agcagatggc acccgaggtc cgggacacag ggatggtggc cctgggctct ctggttggaa
6256 1321 agctgtgcca gcagcagctg tgcggactgc aggaggtgaa acacggcatg gaaaccatcc
6257 1381 taacagggct gagaagtgcc gagaaggagc acgaggcagt catccacctt ctggccctgg
6258 1441 ggaatgcgca gctccccagc accatcccca ccctcctgga gcacgcagag aaaggtccca
6259 1501 ccgccgtggc agctgcagcc atcagcgccc tgcggcaatt ccgtgcctgg cacatcacca
6260 1561 gcgaggtgaa aagagcaatg aggaggatct tccacgagaa gaggaagagc tacgagaaaa
6261 1621 catgccgctt ggccgctgca gaaatcctct tggataacac acccttgtcc atggatgtca
6262 1681 tcaacatcct gctggccgct caccatctgg gaacagaagc agcaacgttc ctgttactga
6263 1741 aggtgcagag cagcctgcat gccaaccacc acccagcaag gaagataatg agtgacatca
6264 1801 tgagagaccc tcggataaac aactacaacc acttttcgaa agctggcatc tcctcctcct
6265 1861 tctcaggacc tctgacagcc accaaggaac tgctctccac cttcgggctg gacctgctgt
6266 1921 ttttggaggg tgggttcctg agaaagagtg tctccgactt ctcgctgctc agccaagact
6267 1981 ggcatcttcg tgcggctcag gtcactatag aagcacaagg gatggagtct atgctgggag
6268 2041 aaaacacctt ggaaggggaa gaggggccag agctcacggc tgggatgtct gccatcttct
6269 2101 ttgatgtcca gttgcggccc atcatcttct tcaagggata tacagaccta atggccaagg
6270 2161 ttctgctgag cagtggggaa cccacaagcg tggtcaaagg gaacctcctg ctgatggacc
6271 2221 atcaccaggt catccctctg cagtctggtc tccaggcagt ggtcaaactc cagggtggac
6272 2281 tcgggcttga tatctcagcc aacgtggatg tgaacatctg ggagcaggaa ctgaagacca
6273 2341 gtgtcgacac caggggaagc ctcaccattg atttccaggc agaattggac acccctttcc
6274 2401 tccataccac cctgaggagc cagacagagg cagagacctc aatctacttc gacaccatcc
6275 2461 tgagattttc cagtagccct gtgctcatgt gcctgcagct gagggaggat caggtaccct
6276 2521 atagagaggt cttcaccatc tctacatctg ctgggaacca aagcagcact attcgaaaag
6277 2581 gccggcaggg cactgtgcct gcccaggagt ttgccctgca ccaggccaac tctgagatgt
6278 2641 gccacctgct gctgacagca gaggagggag cataggagag gagaccattt gggacagagc
6279 2701 ttctgcatcc ctgcctgcca tgcaccctgg t
6280 //
6281
6282 LOCUS NM_001257371 2395 bp mRNA linear VRT 04-JAN-2017
6283 DEFINITION Gallus gallus NME/NM23 family member 5 (NME5), mRNA.
6284 ACCESSION NM_001257371 XM_003642079
6285 VERSION NM_001257371.2
6286 KEYWORDS RefSeq.
6287 SOURCE Gallus gallus (chicken)
6288 ORGANISM Gallus gallus
6289 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6290 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6291 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6292 Phasianidae; Phasianinae; Gallus.
6293 REFERENCE 1 (bases 1 to 2395)
6294 AUTHORS Savolainen P, Fitzsimmons C, Arvestad L, Andersson L and Lundeberg
6295 J.
6296 TITLE ESTs from brain and testis of White Leghorn and red junglefowl:
6297 annotation, bioinformatic classification of unknown transcripts and
6298 analysis of expression levels
6299 JOURNAL Cytogenet. Genome Res. 111 (1), 79-87 (2005)
6300 PUBMED 16093725
6301 REFERENCE 2 (bases 1 to 2395)
6302 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
6303 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
6304 TITLE A comprehensive collection of chicken cDNAs
6305 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
6306 PUBMED 12445392
6307 COMMENT VALIDATED REFSEQ: This record has undergone validation or
6308 preliminary review. The reference sequence was derived from
6309 BU273418.1, AADN04000142.1, CN228756.1 and CN235652.1.
6310 On Feb 11, 2016 this sequence version replaced gi:383387817.
6311
6312 Sequence Note: This RefSeq record was created from transcript and
6313 genomic sequence data from different strains because no single
6314 transcript from the same strain was available for the full length
6315 of the gene. The extent of this transcript is supported by
6316 transcript alignments and orthologous data.
6317
6318 ##Evidence-Data-START##
6319 Transcript exon combination :: BU273418.1, CO635606.1 [ECO:0000332]
6320 RNAseq introns :: single sample supports all introns
6321 SAMEA2201360, SAMEA2201361
6322 [ECO:0000348]
6323 ##Evidence-Data-END##
6324 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
6325 1-60 BU273418.1 1-60
6326 61-70 AADN04000142.1 732083-732092
6327 71-88 BU273418.1 71-88
6328 89-710 CN228756.1 1-622
6329 711-937 CN235652.1 291-517
6330 938-2395 AADN04000142.1 739902-741359
6331 FEATURES Location/Qualifiers
6332 source 1..2395
6333 /organism="Gallus gallus"
6334 /mol_type="mRNA"
6335 /db_xref="taxon:9031"
6336 /chromosome="13"
6337 /map="13"
6338 /breed="Leghorn"
6339 gene 1..2395
6340 /gene="NME5"
6341 /note="NME/NM23 family member 5"
6342 /db_xref="CGNC:52876"
6343 /db_xref="GeneID:426732"
6344 misc_feature 71..73
6345 /gene="NME5"
6346 /note="upstream in-frame stop codon"
6347 CDS 191..829
6348 /gene="NME5"
6349 /EC_number="2.7.4.6"
6350 /note="non-metastatic cells 5, protein expressed in
6351 (nucleoside-diphosphate kinase)"
6352 /codon_start=1
6353 /product="nucleoside diphosphate kinase homolog 5"
6354 /protein_id="NP_001244300.1"
6355 /db_xref="CGNC:52876"
6356 /db_xref="GeneID:426732"
6357 /translation="MQMLMPEPQIFVEKTLALIKPDVVAKEEEIEDLILRSGFMIVQK
6358 RKLQLSPEQCSIFYADQYGKMFFPNLAAYMSSGPSVAMILARHRAVSYWKELLGPSNS
6359 IKARMTHPHSLRAIYGTDDLRNGLHGSLSTSSAEREIRFMFPEVISEPIPAGQRARDY
6360 LNLHVNPTLLAGLTALCKEKPADPMTWLADWLMEHNPNKPRLQHHVTEEDQE"
6361 ORIGIN
6362 1 cccgccgcga ggggcgcgga ggccatcttg tggccgctgt gcccgctgcc cgcccggccc
6363 61 cgtcgtcgcc tagcaacggg gaggtgcgcg gcatggcggc ggggcgggcg cagcggggcc
6364 121 gctggcggcc gtgactggga gctgtggttc caggacaaag aagcacgcgg gttctaattc
6365 181 agaagcaaag atgcagatgc taatgccaga acctcagatt tttgtagaaa aaacactggc
6366 241 tctcatcaaa cctgacgttg tagctaagga ggaagagata gaggatctca tcctcagatc
6367 301 tggattcatg attgttcaga aacggaagct ccagttaagc ccagagcaat gtagcatctt
6368 361 ttatgcagac cagtatggaa aaatgttttt tcctaatcta gcagcctata tgagctctgg
6369 421 accttcagtt gccatgattc ttgccaggca tcgtgcagtc tcatactgga aggaattgct
6370 481 tggaccatca aacagcataa aagctaggat gactcaccct cacagtttaa gagcaatcta
6371 541 tgggactgat gatctgagga atggacttca tggcagtctc agcacttcct cagcagaaag
6372 601 agaaattcga ttcatgtttc cagaagtgat ctcggagcca attccagctg gacaaagagc
6373 661 tagagattat ttgaatcttc atgtaaatcc tacattacta gctgggctca cggcactttg
6374 721 taaagagaag ccagcagatc caatgacatg gcttgctgac tggctgatgg aacacaaccc
6375 781 taacaaacct aggttacaac atcacgtcac tgaagaagac caggagtaag atctcagtgg
6376 841 aaatcacctc aagtattcca agttacagat ggatgtcatc gttttcactg tatccctggg
6377 901 gaattagtat tatttgaagt aaatgttatt gtcataacta ctctcatgtc tttatggaat
6378 961 ccttatcctt actctttgcc aggatttaac agctgtagta acttttctat tgacttagag
6379 1021 agtgtagact tgcatgataa atttactgtg tcaggtgatt agaaaaggat gaaattatct
6380 1081 tcaggtgtta cctgaactgc tattttctct aattgtcttg atgtggctgc ctggggaaaa
6381 1141 taaaatcatt aagacaatca cagattccca agtgacattc agctggtcta tactctgtta
6382 1201 agcagacttt tttctagcac ttttttagga gacacaaatt gcattctggg agaaggtacc
6383 1261 tgaatgtaac ttagatacaa agggcatgtt accaacctga gaaatactgc tgttggctgc
6384 1321 atcactgagc tatggtaact cctgaagtgg tgacttgaga ctgttgtatt ttgacagtat
6385 1381 aatttgaaat tctgaattaa agccatcttg aatgtacatt ttccatctca gtgacaaaag
6386 1441 gcacagtggt tataaatcag tctctaattt ctattagaaa tcacaggagg gtgtatttta
6387 1501 gggactaatg ctgatattaa ttccaatatc tgtttaaaga aaggtgctta aatgcaacag
6388 1561 ctcatagtag gggtggtttt tttgtgctca tctactctta aaaggtatgc tgatttctgt
6389 1621 tgtttccctt gtattgcttt ttacatttga aatttactgt gttttatttg acagtttcaa
6390 1681 gggggtgggt taggggctgt gctgttcaac aggcagtggt taatcctgta ctctatttct
6391 1741 gaagtaattg gacaggtttg ggggaggata ggggactgtt tttcttaaaa gttatatttg
6392 1801 cgctgttaac ttcgaacttt gtatcttgtg gttttcgtgg attgcatgga gaaagcattg
6393 1861 gtcttacagc tctgagcctt gggcagactc atactaaaac aaagtcatag tttgctttat
6394 1921 gacaaacctt gcttctcaaa cttgaataat tagcagcaac ttcagtcaat agtctgtaac
6395 1981 attaaacttc taaattaact gtgcatcttc taagagaata aatccacact tgccacttca
6396 2041 gataacccat ctctacgaaa acaaaacaaa aaaacacaac agcctaacac tcagatatga
6397 2101 agaaagaata acaaggtcat tagaaataca gcaagcagat ctcttcataa ctaatttctt
6398 2161 ttgcgtgtgt ttattgttcc ctacacacgt ctgattgctg caattatagg acagctgtgc
6399 2221 tttgtggttt cctgttagcc aaaccaaaac acttctattt tgaacttgcc agaagctaaa
6400 2281 agccaatgga ttcacaatgt tttctccttc atttttgtta gttactgtgg cgtttgctta
6401 2341 cttagttact tagatgtgtt atagtttgac aataaatatt tcctttatgt tatgg
6402 //
6403
6404 LOCUS NM_001292086 6644 bp mRNA linear VRT 04-JAN-2017
6405 DEFINITION Gallus gallus LEO1 homolog, Paf1/RNA polymerase II complex
6406 component (LEO1), mRNA.
6407 ACCESSION NM_001292086 XM_001232677
6408 VERSION NM_001292086.2
6409 KEYWORDS RefSeq.
6410 SOURCE Gallus gallus (chicken)
6411 ORGANISM Gallus gallus
6412 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6413 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6414 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6415 Phasianidae; Phasianinae; Gallus.
6416 COMMENT VALIDATED REFSEQ: This record has undergone validation or
6417 preliminary review. The reference sequence was derived from
6418 BU230505.1, BU260848.1, CN232844.1, BU431855.1 and AADN04000364.1.
6419 On Feb 11, 2016 this sequence version replaced gi:638280130.
6420
6421 Sequence Note: This RefSeq record was created from transcript and
6422 genomic sequence data to make the sequence consistent with the
6423 reference genome assembly. The genomic coordinates used for the
6424 transcript record were based on transcript alignments.
6425
6426 ##Evidence-Data-START##
6427 RNAseq introns :: mixed/partial sample support SAMEA2201357,
6428 SAMEA2201358 [ECO:0000350]
6429 ##Evidence-Data-END##
6430
6431 ##RefSeq-Attributes-START##
6432 inferred exon combination :: based on alignments, homology
6433 ##RefSeq-Attributes-END##
6434 COMPLETENESS: complete on the 3' end.
6435 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
6436 1-611 BU230505.1 1-611
6437 612-696 BU260848.1 576-660
6438 697-1451 CN232844.1 1-755
6439 1452-2081 BU431855.1 12-641
6440 2082-6644 AADN04000364.1 1126269-1130831
6441 FEATURES Location/Qualifiers
6442 source 1..6644
6443 /organism="Gallus gallus"
6444 /mol_type="mRNA"
6445 /db_xref="taxon:9031"
6446 /chromosome="10"
6447 /map="10"
6448 /breed="Leghorn"
6449 gene 1..6644
6450 /gene="LEO1"
6451 /note="LEO1 homolog, Paf1/RNA polymerase II complex
6452 component"
6453 /db_xref="CGNC:55225"
6454 /db_xref="GeneID:769405"
6455 CDS 17..1990
6456 /gene="LEO1"
6457 /note="RNA polymerase-associated protein LEO1-like; Leo1,
6458 Paf1/RNA polymerase II complex component, homolog"
6459 /codon_start=1
6460 /product="RNA polymerase-associated protein LEO1"
6461 /protein_id="NP_001279015.1"
6462 /db_xref="CGNC:55225"
6463 /db_xref="GeneID:769405"
6464 /translation="MADMEELFGSDADSEAEQKDTDSGSDSDSDQENAGSGSNASGSD
6465 SEQDDEREAAKPSNKELFGDDSEDEGASHHTGSDNHSERSYNRSEASGHSEHEDNDQS
6466 DVDQHSASEAAHDDEEDERGHGSDEGSHHSEGDGSEKAHSEDEKWGKEDKSDQSDDEE
6467 RQQNSDDEERQQNSDDEEKAQNSDEDERPQMSDDEERLQNSDEEKMQNSDDEERPQVS
6468 DEEKMQNSDDDERAQHSDEEKMQNSDDDERAQRSDEEEQEHKSGESARGSDSEDEVLR
6469 MKRKKPIASDSEADSDTEGQKEHADVMDLFGGADDISSGSDGEDKPPTPGQPIDENGL
6470 SQEQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDE
6471 EMLDEEGRTRLKLKVENTIRWRMRRDEEGNEIRESNARIVKWSDGSMSLHLGNEVFDV
6472 YKAPLQGDHTHLFIRQGTGLQGQAVFRTKLTFRPHSTDSATHRKMTLSLADRCSKTQK
6473 IRILPMAGRDPESQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRY
6474 EEEDEGDDAISLAAIKNRYKGGIREERARIYSSDSDEGSDEDKTQRLLKAKKLTSDEE
6475 GEPSGKRKAEDDDKASKKHKKYVISDEEEDDDD"
6476 ORIGIN
6477 1 ggcgcgtgca gcagccatgg ccgacatgga ggagctgttc ggcagcgacg ccgactcgga
6478 61 ggccgagcag aaagataccg attccggctc agactccgac tctgaccagg agaacgcggg
6479 121 ctccggcagc aacgcctcgg gcagcgacag cgagcaggac gacgagcggg aggcagcaaa
6480 181 gcccagcaac aaggagctgt tcggagacga cagcgaggat gaaggagcct cccatcacac
6481 241 gggcagcgac aaccactccg agaggtcgta caatcgctcc gaagcttcgg ggcactctga
6482 301 gcacgaagac aacgatcagt cggacgtgga ccagcacagc gcttcagaag cggctcatga
6483 361 cgatgaggag gacgagcggg ggcacggctc tgatgagggc agtcaccatt ctgagggaga
6484 421 tggttcagaa aaggcccatt cggaggatga gaagtggggc aaggaggaca aaagcgatca
6485 481 gtcagatgat gaggagcgac agcagaactc tgatgatgag gagagacagc agaactcgga
6486 541 cgatgaggag aaagcacaga actctgatga agatgagagg ccgcagatgt ctgacgatga
6487 601 ggagaggctc cagaactcgg atgaggagaa gatgcagaac tctgatgatg aggagaggcc
6488 661 gcaggtgtcg gacgaggaga agatgcaaaa ctcagatgat gatgaaagag cccagcactc
6489 721 tgatgaggag aagatgcaga actctgacga tgacgaaagg gcccagcgct ccgatgagga
6490 781 ggagcaggag cataaatctg gagagtctgc aagaggcagc gacagtgaag atgaagtcct
6491 841 gcgaatgaag cgaaagaaac caattgcatc agattcagag gcggacagtg atacagaagg
6492 901 ccagaaggaa cacgcagacg tcatggacct gtttggagga gcagatgaca tttcttcggg
6493 961 aagcgatggg gaagacaagc cgccaactcc aggacagccc attgatgaga atgggctgag
6494 1021 ccaagaacag caggaggaag agcctattcc agagacaaga atagaggtag aaataccaaa
6495 1081 agtaaacaca gacttgggta acgatttgta ttttgtgaag ctgcccaact tcctcagtgt
6496 1141 ggagcccaga ccatttgatc cccagtatta tgaggatgaa tttgaagatg aggagatgct
6497 1201 tgatgaggaa gggagaacga gattaaaact taaggtagaa aacacaatac ggtggcggat
6498 1261 gcggcgagat gaggaaggga atgagattag agaaagcaat gcccggatag tcaagtggtc
6499 1321 ggatggaagc atgtctctcc acttgggaaa tgaggtcttt gatgtgtaca aggcaccgct
6500 1381 gcagggagat cacacccatc tgtttatcag acaagggaca ggtctgcaag gacaggctgt
6501 1441 tttcaggaca aagttaacct tcaggccaca ctctacagac agtgccacgc acaggaagat
6502 1501 gactctgtct ctggcagata ggtgttcaaa gacccagaaa attcgtattt tgccaatggc
6503 1561 gggtcgtgat ccggagtctc agcgcacaga aatgattaag aaagaagagg agagattaag
6504 1621 agcttccatt cgcagagaat ctcagcagcg aagaatgagg gagaagcagc atcagcgtgg
6505 1681 tctgagtgct aattacttag aacccgatcg ctatgaagaa gaggacgagg gagacgatgc
6506 1741 gatcagtcta gcagctatca aaaacagata caaaggtggc atcagagagg aacgtgctag
6507 1801 aatctattct tcagacagtg atgaaggctc agatgaagat aaaacacaaa gactactcaa
6508 1861 ggcaaagaaa cttactagtg atgaggaagg ggagccttct ggaaagagaa aagcagagga
6509 1921 tgatgacaaa gcaagtaaga agcataagaa gtatgtcatc agtgatgaag aggaagatga
6510 1981 tgatgattaa cattgaggga gcactgaagt tgctttctat atatacatat ttatatataa
6511 2041 attgtacagt tctcttacag caaagatgta agtagccata ttggggttat tttgataaag
6512 2101 gagaattcca ttgaaatttg tgtttctggt gtgaataaaa gttggtttct ttctttttac
6513 2161 tttctcatat ttttacatct tatcttactg cagcagctgc tgcaatgggg atcatcatag
6514 2221 catcagtttt taaatcttgt acagtacatt tcagttttga aatctatagt acaaactggt
6515 2281 tgtacaactg aatagaactg aataaatcag tggtcttact gagttcatta ggagaaatca
6516 2341 taatcttcat atagaatgct taaattataa gttttctcag ccaggttatg gagatgaagg
6517 2401 ttaccatttg tacagaagat ttggaatatc atatgagtgg cacaacaccg tactgttttt
6518 2461 tcctgcactt tcctattacg tactgctggc tgtagatggt acattactgt gctgttatat
6519 2521 tttgatattt ttgactgaag gtatttctta tcatgtctac tctgagtaaa ctgtgaagtt
6520 2581 cctgtagtta gaatagtaaa ccaaccacaa gatgtttatt ttttcataaa ttgaacgaaa
6521 2641 atccacctct catctgagcg ttagcattaa taagaataat cacattagcg atggaactgt
6522 2701 caggatagaa gcacttgttt atacaaaacc aacgaatttc tgcaagttca tgaaaggctt
6523 2761 ctttaacaac tgcagtgagc cgccctgtga atacatatcc tgctaatagc attttgtaat
6524 2821 ctcatacaag ccttatgatg cattttccta ttgttctggg ttggctgaaa agacagcgga
6525 2881 ggagaatatt gtggacagag ttattgctgc ttttatgcta tttttaaaca ccttatttga
6526 2941 ttatgcaaat agcattgcaa aatgaggaga ggctacaaga aatgtctcat cttttccact
6527 3001 ctttaagatt atgtttccca cgtgtagttt cccttgttgg tgagatagca tttccatgtt
6528 3061 atctatgttg ttttttaact gccttttcac atagtcctag aaagcttgtg acttcatgga
6529 3121 ggtagcagga agaaagcaga aagcatagct taatgcctct ttaaatgcat tgagcggtgc
6530 3181 catggaaagt ttgctgagtg gatttatgtt tcgtaagata aagtagctta cagttatgta
6531 3241 agaataaatg ttactcatct ctctcctgcc cagatgaatt atgcttttct ataaaaactg
6532 3301 ttgagttaca gcttttaacc tggctgtctt gcctttgaaa tgtgtaatta ggcaaacagt
6533 3361 ttactgaagt actctacctc catttttctt gcctggaagg tgtgggaagc attctagctg
6534 3421 cagaggcaca gagctctgca cgcattaata tattctgctc agcagctgac tgcagtgtag
6535 3481 acacttgcaa atatgaaaac aaagtgaaaa atgtctactc tgaagtctga gtgcctgaga
6536 3541 agctgttctt ttgttgttgt tgttgttgtt tttgtacttg tttctaagag ttcctgcctc
6537 3601 tcttccctgt gcagataaaa cctttctcca tctgctccaa ttttgagtaa tcctcttagg
6538 3661 ttagacctct gctgggagtc tggctcctca catgtggtta cctgcttttc tgttgtaacc
6539 3721 tgctcaggaa gaagccagct gtagaaaaag ggagttgttt cttatgctat gtggttgcta
6540 3781 gactttcgtg tcaaagtctc ccagatacct cttgagcagc aatgcaaagt gtatggaaac
6541 3841 tcaccaccat ttcactgctg atgtgtttgc ttaatgtcag tttaattaaa gcattggtta
6542 3901 cttttactat attccaaagg gtgaaaatgt tttaatcact cttacaggtt tgatgctgac
6543 3961 taagccttta cttggtaagt gggctacttt agcttccaaa aaggaggctt ttgtggattt
6544 4021 aaaagattaa aaggagtgtt tttttctact gtcttctttt gtaaattgct cttctaaagt
6545 4081 cttattaaaa catagaattt tagaaagtgt tttctcagcc taaattggtt taacaatcac
6546 4141 cttttaatta aagtcacttg aacgaacttt gtcttatcca tagtatttgt tgcttgtgag
6547 4201 tgtggtgtac agttctgttt cactcatagg cagttttttt gctctccctt ttcccagcct
6548 4261 ccaagtatgt gacaattact tggaattgtt tttcttaccc aaatcagaaa tatgaagctg
6549 4321 gaactaaagt gcgtaaggag aaggaaagaa caagtaggtg aactgtattt acttttgtac
6550 4381 agactggcca gagtacttct tccagaaagg ttatgatttg gacaatttcc aaaaataaaa
6551 4441 atctgtttga agagctgata atgagctgag ttttagattt tctggctagt ggtagagtgt
6552 4501 aggatcagtt gtcttgaaac catcactgaa aggtgttcct agctatatag ttttgttgtt
6553 4561 tcaggtatat tgttcaactg tacgcttgcc aattgcagaa ctggagtttt ctttctagca
6554 4621 ctgagtaaca ttctcttcca tccttgccct gcaagttgac accattttca tgctagaggc
6555 4681 aagcctgatg gatcaggggc tgccctcaga agggtgcagc tgcccatgca gtccttgtct
6556 4741 ctttctagca gcaggtttgg caatacctgc ctggcttagc tcagagtgaa tttgctaaac
6557 4801 tcccaggaaa ctgattttct gctgtgctgg agttttgtgc cataggccag cagaactact
6558 4861 tcattggcca tgtgaacaag gtagccagct cagtaagttg gcctggtcat gaggacatca
6559 4921 ggggatatgg cagaaggatg ctctctttgg cagaggtgta aacttttact tgactgcctt
6560 4981 ttgaaaactt agcttgaccc tgcagaaggt agttgatagt tttctactgc tgtagctgcc
6561 5041 tcagctggca cactggtgtg tcggttgtga ctggaggtgg tgcaagaggt agaacaggac
6562 5101 agttctgtgt gtggcagcaa gttttaactc ggctcagatg tgaaactgca gccacaggaa
6563 5161 tgtgttaaac atgagatggt gactttccag tgaagtcata ggtatttatt tctcagccag
6564 5221 tgggcatagg agcccatggt gtcggcccat tctaatggag tgcttttctc taacagctta
6565 5281 atgctgctgg tcaagctgag tgttactgag tgcatagaga tggtcacatg ggaaagaaag
6566 5341 agagaatttt gtttctgata aatgttcttt taatattagt tataagaagt tttacatatt
6567 5401 agatttgtga aattcagcta cgctgttgta acacttagac acttgcctgt ggcttgactt
6568 5461 ggaagtgctt gtggagagca atgtgactaa cacctcgtgt tgcctagtga tgccctttca
6569 5521 cttgagctgg ggttttttta gtgcctgtct ggacatgaaa gacttagaga aaagctgcaa
6570 5581 acaagtgttg actgctagct tgtatcttta attgctttaa aactcgtggg cattctcatg
6571 5641 aattatataa gcttaagtag ttgagaaaat gacataaaat taagtaaatc cctgctgaaa
6572 5701 tcattctcag acagaatttg acaaaaaaaa atcctttcac aagtcttttt tgacattttt
6573 5761 tttctaaagg attttttatg gtttcaagac tggactgatg cttgggggga aaaaggagtt
6574 5821 actgaagtgg aagcttaact agaaagtttt tatttgttgc tttgttttct ccattatttc
6575 5881 gtgaagaatt gagagactgt agagccagtt taccaacaaa agtaacctca tgtcttttga
6576 5941 gttaggatga aattttctgg gaaagaatgg cattcctgca gttattgata gccatggaat
6577 6001 catatataca ctgtattctt catatattgt caattaaaca taaataaaat cctaggaaat
6578 6061 ggtaaaagca tcaactatca caccctcttt tttctatctt atgactgaat taactttctg
6579 6121 tgttttcatg cttttctcct caaaacactt cataatgtaa ctggaaaaga cacactaatc
6580 6181 ctagcgtgat gatctgtcag ttaccttgtg ggttttttcc tctttgtctg tcagtgtaaa
6581 6241 ggtgtatgat agacattctg tacagaacgg gctcttagaa caggatttgc tgttgagctc
6582 6301 tacagtaaac cttttatttt aattttgcat ggatgctcaa ggaccactct cattttcata
6583 6361 tgtaaaggaa ataaacttac gtttttggca acggcagtaa tcagcatctt tccttcaggt
6584 6421 gtttagtaca cttgtacata gtgatcgtgt ttgggaagtt gtcctgcttg gttggctgag
6585 6481 ggttgtattg tgagatgtgt aacctactat ctctgtaagc ccagtgctgt tgctcgttgt
6586 6541 atttaatgcc agcagcatca agttttgttt acaaatccgg aatcaggtaa ctgtatttaa
6587 6601 actatgtcag cttgtcatct cccagtctta tttttcagct taaa
6588 //
6589
6590 LOCUS NM_204766 5992 bp mRNA linear VRT 04-JAN-2017
6591 DEFINITION Gallus gallus myosin, heavy chain 15 (MYH15), mRNA.
6592 ACCESSION NM_204766
6593 VERSION NM_204766.2
6594 KEYWORDS RefSeq.
6595 SOURCE Gallus gallus (chicken)
6596 ORGANISM Gallus gallus
6597 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6598 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6599 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6600 Phasianidae; Phasianinae; Gallus.
6601 REFERENCE 1 (bases 1 to 5992)
6602 AUTHORS Rossi AC, Mammucari C, Argentini C, Reggiani C and Schiaffino S.
6603 TITLE Two novel/ancient myosins in mammalian skeletal muscles: MYH14/7b
6604 and MYH15 are expressed in extraocular muscles and muscle spindles
6605 JOURNAL J. Physiol. (Lond.) 588 (PT 2), 353-364 (2010)
6606 PUBMED 19948655
6607 REMARK GeneRIF: Chicken ventricular MYH is the ortholog of mammalian MYH15
6608 REFERENCE 2 (bases 1 to 5992)
6609 AUTHORS Garriock RJ, Meadows SM and Krieg PA.
6610 TITLE Developmental expression and comparative genomic analysis of
6611 Xenopus cardiac myosin heavy chain genes
6612 JOURNAL Dev. Dyn. 233 (4), 1287-1293 (2005)
6613 PUBMED 15986480
6614 REFERENCE 3 (bases 1 to 5992)
6615 AUTHORS Ching YH, Ghosh TK, Cross SJ, Packham EA, Honeyman L, Loughna S,
6616 Robinson TE, Dearlove AM, Ribas G, Bonser AJ, Thomas NR, Scotter
6617 AJ, Caves LS, Tyrrell GP, Newbury-Ecob RA, Munnich A, Bonnet D and
6618 Brook JD.
6619 TITLE Mutation in myosin heavy chain 6 causes atrial septal defect
6620 JOURNAL Nat. Genet. 37 (4), 423-428 (2005)
6621 PUBMED 15735645
6622 REFERENCE 4 (bases 1 to 5992)
6623 AUTHORS Srikakulam R and Winkelmann DA.
6624 TITLE Chaperone-mediated folding and assembly of myosin in striated
6625 muscle
6626 JOURNAL J. Cell. Sci. 117 (PT 4), 641-652 (2004)
6627 PUBMED 14709723
6628 REMARK GeneRIF: The folding and assembly of striated muscle myosin was
6629 analyzed by expressing a GFP-tagged embryonic myosin heavy chain
6630 (GFP-myosin) in post-mitotic C2C12 myocytes using replication
6631 defective adenoviruses.
6632 REFERENCE 5 (bases 1 to 5992)
6633 AUTHORS Yazawa S, Obata K, Iio A, Koide M, Yokota M, Sasaki S, Kagami H and
6634 Ono T.
6635 TITLE Heart-selective expression of the chicken FK506-binding protein
6636 (FKBP) 12.6 gene during embryonic development
6637 JOURNAL Dev. Dyn. 226 (1), 33-41 (2003)
6638 PUBMED 12508222
6639 REFERENCE 6 (bases 1 to 5992)
6640 AUTHORS Machida S, Noda S, Furutani Y, Takao A, Momma K and Matsuoka R.
6641 TITLE Complete sequence and characterization of chick ventricular myosin
6642 heavy chain in the developing atria
6643 JOURNAL Biochim. Biophys. Acta 1490 (3), 333-341 (2000)
6644 PUBMED 10684978
6645 REFERENCE 7 (bases 1 to 5992)
6646 AUTHORS Camoretti-Mercado B, Dizon E, Jakovcic S and Zak R.
6647 TITLE Differential expression of ventricular-like myosin heavy chain mRNA
6648 in developing and regenerating avian skeletal muscles
6649 JOURNAL Cell. Mol. Biol. Res. 39 (5), 425-437 (1993)
6650 PUBMED 8173588
6651 REFERENCE 8 (bases 1 to 5992)
6652 AUTHORS Watanabe B.
6653 TITLE Amino-acid sequence of the short subfragment-2 in adult chicken
6654 cardiac muscle myosin
6655 JOURNAL Biol. Chem. Hoppe-Seyler 373 (10), 1045-1054 (1992)
6656 PUBMED 1418675
6657 REFERENCE 9 (bases 1 to 5992)
6658 AUTHORS Bisaha JG and Bader D.
6659 TITLE Identification and characterization of a ventricular-specific avian
6660 myosin heavy chain, VMHC1: expression in differentiating cardiac
6661 and skeletal muscle
6662 JOURNAL Dev. Biol. 148 (1), 355-364 (1991)
6663 PUBMED 1936571
6664 REFERENCE 10 (bases 1 to 5992)
6665 AUTHORS Stewart AF, Camoretti-Mercado B, Perlman D, Gupta M, Jakovcic S and
6666 Zak R.
6667 TITLE Structural and phylogenetic analysis of the chicken ventricular
6668 myosin heavy chain rod
6669 JOURNAL J. Mol. Evol. 33 (4), 357-366 (1991)
6670 PUBMED 1774788
6671 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
6672 NCBI review. The reference sequence was derived from AB032197.1.
6673 On Feb 3, 2016 this sequence version replaced gi:45382108.
6674
6675 ##Evidence-Data-START##
6676 Transcript exon combination :: AB032197.1 [ECO:0000332]
6677 RNAseq introns :: mixed/partial sample support
6678 SAMEA2201357, SAMEA2201358
6679 [ECO:0000350]
6680 ##Evidence-Data-END##
6681 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
6682 1-5992 AB032197.1 4-5995
6683 FEATURES Location/Qualifiers
6684 source 1..5992
6685 /organism="Gallus gallus"
6686 /mol_type="mRNA"
6687 /db_xref="taxon:9031"
6688 /chromosome="1"
6689 /map="1"
6690 /breed="Leghorn"
6691 gene 1..5992
6692 /gene="MYH15"
6693 /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
6694 /note="myosin, heavy chain 15"
6695 /db_xref="CGNC:49365"
6696 /db_xref="GeneID:395534"
6697 misc_feature 35..37
6698 /gene="MYH15"
6699 /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
6700 /note="upstream in-frame stop codon"
6701 CDS 50..5863
6702 /gene="MYH15"
6703 /gene_synonym="MYH6; myosin; P-MHC; VMHC1"
6704 /note="myosin, heavy chain 6, cardiac muscle, alpha;
6705 ventricular myosin heavy chain 1; cardiac muscle isoform"
6706 /codon_start=1
6707 /product="myosin heavy chain, cardiac muscle isoform"
6708 /protein_id="NP_990097.1"
6709 /db_xref="CGNC:49365"
6710 /db_xref="GeneID:395534"
6711 /translation="MMDMTEFGEAAPFLRKSEKELMMLQTVAFDGKKKCWVPDDKKAY
6712 VEAEITESSGGKVTVETTDGRTMTIKEDDVQSMNPPKFDMIEDMAMLTHLNEASVLYN
6713 LRKRYSNWMIYTYSGLFCVTINPYKWLPVYKSEVVAAYKGKRRSEAPPHIFSIADNAY
6714 HDMLRNRENQSMLITGESGAGKTVNTKRVIQYFATVAALGEPGKKSQPATKTGGTLED
6715 QIIQANPALEAFGNAKTLRNDNSSRFGKFIRIHFGTTGKLSSADIEIYLLEKSRVIFQ
6716 QPGERDYHIFYQILSGKKPELLDMLLVSTNPYDYHFCSQGVVTVDNLDDGEELMATDQ
6717 AMDILGFVPDEKYGAYKLTGAIMHFGNMKFKQRPREEQAEADGTESADKAAYLMGINS
6718 SDLVKGLLHPRVKVGNEYVTKGQSVEQVLYAVGALSKAVYDRMFKWLVVRINKTLDTK
6719 LPRQFFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYKKEGIEW
6720 VFIDFGMDLQACIDLIEKPLGILSILEEECMFPKATDMTFKAKLYDNHLGKSPNLQKP
6721 RPDKKRKYEAHFELIHYAGSVPYNIIGWLEKNKDPLNETVVGIFQKSSNKLLASLFES
6722 YVGADSADQGGEKKRKKGASFQTVSSLHKENLNKLMTNLRSTAPHFVRCIIPNESKTP
6723 GEMDAFLVLHQLRCNGVLEGIRICRKGFPNRVLYADFKQRYRILNPGAIPEDKFVDSR
6724 KAAEKLLASLDIDHNQYRFGHTKVFFKAGLLGHLEEMRDERLAKILTMIQARARGRLM
6725 RIEFQKIVERRDALLVIQWNIRAFMAVKNWPWMKLFFKIKPLLKSAETEKEMANMKEE
6726 FLKLKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQAEQDTLADAEERCDLLIKSKI
6727 QLEAKVKELTERVEDEEEMNSELTSKKRKLEDECSELKKDIDDLEITLAKVEKEKHAT
6728 ENKVKNLTEEMATLDENISKLTKEKKSLQEAHQQVLDDLQAEEDKVNTLSKAKVKLEQ
6729 QVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESVMDLENDKLQMEEKLKKKEFEM
6730 SQLNSKIEDEQAIVMQLQKKIKELQARIEELEEELEAERAARAKVEKQRSDLARELEV
6731 LSERLEEAGGATAAQLEMNKKREAEFLKLARDLEEATLHYEATAAALRKKHADSVAEM
6732 GEQLDNLQRVKQKLEKEKSELKMEVDDLTSNMEQTVKGKANAEKLCRTYEDHLNETKT
6733 KLDEMTRLMNDLTTQKTKLQSENGEFVRQLEEKESLISQLSRGKTSFTQQIEELRRQL
6734 EEETKSKNALAHALQAARHDCDLLREQYEEEQEAKAELQRALSKGNAEVAQWRTKYET
6735 DAIQRTEELEDAKKKLAARLQEAEEAIEAANAKCSSLEKTKHRLQNELEDMMIDLEKA
6736 NSAAASLDKKQRGFDKIINDWKQKYEESQAELEASQKEARSLSTELFKLKNAYEETLD
6737 HLETLKRENKNLQEEISDLTNQISEGNKNLHEIEKVKKQVEQEKSEVQLALEEAEGAL
6738 EHEESKTLRFQLELSQLKADFERKLAEKDEEMENIRRNQQRTIDSLQSTLDSEARSRN
6739 EAIRLKKKMEGDLNEMEIQLSHANRHAAEATKSARGLQTQIKELQVQLDDLGHLNEDL
6740 KEQLAVSDRRNNLLQSELDELRALLDQTERARKLAEHELLEATERVNLLHTQNTSLIN
6741 QKKKLEGDISQMQNEVEESIQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMK
6742 KNMEQTIKDLQKRLDEAEQIALKGGKKQIQKLESRVRELENELENELRRNSDAQKGAR
6743 KFERRIKEVTYQSEEDKKNLARMQDLIDKLQLKVKSYKHQAEEAEAQANLYLSKYRKQ
6744 QHDLDDAEERAEIAESQVNKLRSKSRDIGMKKVHEEE"
6745 ORIGIN
6746 1 tctttgactt tggcctcctt gagctgtact accttgaagc cttgccaaga tgatggacat
6747 61 gacggaattt ggggaggctg ctcccttcct ccgaaagagc gagaaggagc tgatgatgtt
6748 121 acaaactgtc gccttcgatg ggaaaaagaa atgttgggtt cctgatgaca agaaagctta
6749 181 cgttgaagct gaaattacag aaagcagtgg tggcaaagtg actgttgaga caacagatgg
6750 241 acggaccatg actataaaag aagatgacgt gcagtcaatg aaccctccca aattcgacat
6751 301 gattgaggac atggctatgc tgacccatct gaatgaggca tctgtgttgt acaacctgag
6752 361 gaagcgctac agcaactgga tgatttatac ctactcgggc ttgttctgcg tgactataaa
6753 421 cccctacaag tggctgcctg tctacaagtc ggaggttgtt gctgcctaca aaggcaagag
6754 481 gcgctcagaa gcccctcctc acatcttctc cattgctgat aacgcatacc acgacatgct
6755 541 gcgtaatcgg gaaaatcagt caatgctaat cactggagaa tccggtgctg gcaagactgt
6756 601 caacacaaaa agggtcatcc agtactttgc cacagtggca gccctgggtg aacctggtaa
6757 661 aaagagtcaa cctgctacca aaactggggg aaccttggaa gatcaaatca ttcaagcaaa
6758 721 cccagcccta gaagcttttg gaaacgccaa aaccctgaga aatgacaact cctcacgttt
6759 781 tggtaaattt atccgaatcc attttggaac cacaggcaag ctgtcatctg ctgacattga
6760 841 gatctattta ctggagaaat cccgagtgat ttttcagcaa ccgggtgaga gagactatca
6761 901 catcttctac cagatcttat caggaaagaa accagagttg ctggatatgt tattggtctc
6762 961 caccaaccca tatgactacc acttttgctc ccaaggagta gttacagtgg acaacttgga
6763 1021 tgacggagaa gaactgatgg caacagatca agccatggac attttaggat ttgtgccaga
6764 1081 tgagaagtat ggtgcctaca agctcacagg tgccattatg cactttggga acatgaaatt
6765 1141 caaacaacga cccagagaag agcaggcaga ggctgatggc actgaaagtg ccgacaaagc
6766 1201 tgcctaccta atgggaatca actcctctga tttggttaag ggcttattac accctagagt
6767 1261 gaaagttgga aatgagtatg tgaccaaagg tcaaagtgtt gaacaggttt tgtatgctgt
6768 1321 tggggcctta tccaaggcag tgtatgatcg aatgttcaag tggctggtgg tccgtatcaa
6769 1381 caaaacactg gacactaagc tgccaagaca gttcttcatt ggagtcctgg acattgctgg
6770 1441 ctttgaaatc tttgatttca acagctttga gcaactctgc atcaattaca ctaatgagaa
6771 1501 actgcaacag tttttcaatc atcacatgtt tgtcctcgag caagaagaat ataaaaaaga
6772 1561 aggcattgaa tgggtattta ttgattttgg catggacctg caggcctgta ttgatctaat
6773 1621 tgagaagcca ctaggaatcc tgtctatcct tgaagaagaa tgtatgttcc caaaagctac
6774 1681 agatatgacg ttcaaagcca aactttacga caaccatctt ggcaagtcac ctaacttgca
6775 1741 gaagcccagg cctgataaga aaaggaaata tgaagctcac tttgaactta ttcattatgc
6776 1801 tggctcagtt ccctataaca tcattgggtg gcttgagaag aacaaagacc cacttaatga
6777 1861 aactgtagta ggtattttcc aaaagtcgtc caacaagctc ctggcaagcc tgtttgaaag
6778 1921 ctacgttggt gctgacagtg ctgaccaggg tggagaaaag aaacgcaaga aaggtgcttc
6779 1981 ttttcagaca gtgtcctcat tacacaagga aaatttaaat aaactaatga ctaacctaag
6780 2041 atctacagcc cctcactttg tacgatgcat tattcccaac gaatcaaaaa caccaggtga
6781 2101 aatggatgct ttccttgtct tgcatcagct ccgctgtaat ggtgtcctgg aaggcatccg
6782 2161 catttgccgt aagggtttcc caaacagagt gctttatgct gactttaaac aaaggtaccg
6783 2221 cattctgaac ccaggtgcaa tcccagagga caagtttgtg gatagcagaa aagctgccga
6784 2281 aaaactactg gcatctttag atattgacca taaccaatat cgtttcgggc atactaaggt
6785 2341 gttcttcaag gctggtctgt tgggccacct agaagaaatg agggatgaga gacttgcaaa
6786 2401 gatcctaaca atgatccagg caagggcacg tggcagactg atgaggatcg agttccagaa
6787 2461 gatagtggag cgcagggatg cccttcttgt aattcagtgg aatatccgtg cctttatggc
6788 2521 tgtgaagaat tggccctgga tgaagctttt ctttaagatc aaacctcttc tgaagtctgc
6789 2581 agaaactgaa aaagagatgg ccaatatgaa ggaagagttc ttgaaattga aggaggccct
6790 2641 ggaaaaatct gaagcaagga gaaaggaact tgaagagaaa caagtctctt tagttcagga
6791 2701 aaaaaatgat ttgctattgc agctccaagc tgagcaagac actctggcag atgctgagga
6792 2761 gcgatgcgac ttgttgatta aatccaagat tcagctggag gccaaagtca aagagctgac
6793 2821 agagcgagtt gaggatgagg aagagatgaa ttctgagctg acatccaaaa agagaaaatt
6794 2881 ggaagatgaa tgctctgagc tcaagaaaga tattgatgat cttgaaataa cacttgcaaa
6795 2941 agtagagaaa gagaagcatg ctactgaaaa taaggtgaaa aatctgacag aagaaatggc
6796 3001 gactcttgat gagaacatca gcaaacttac taaggagaag aagtccttgc aggaagctca
6797 3061 tcagcaagtt ctggatgacc ttcaagcaga ggaagacaag gtcaacacac tgagcaaagc
6798 3121 taaagtgaaa ctggaacagc aagtggatga tcttgagggc tcgcttgagc aagagaagaa
6799 3181 agtgaggatg gatctagaaa gagcaaaacg caaactggaa ggagatttga agctgaccca
6800 3241 agagagtgtc atggacttgg agaatgataa gttgcaaatg gaagaaaagc tgaaaaagaa
6801 3301 agagtttgaa atgagccaat tgaattccaa gatagaagat gaacaagcta ttgtaatgca
6802 3361 gctgcagaag aagataaagg aactacaggc tcgtatagaa gagctggaag aggagctgga
6803 3421 agcagaaaga gctgctcgag ccaaggtgga aaagcagaga tcagatttgg cccgagagct
6804 3481 ggaggtatta agtgagcggc ttgaagaggc tgggggtgcc actgctgccc agctggagat
6805 3541 gaacaagaaa cgtgaagctg agttcctgaa gctggcgcgt gacctcgagg aggccacgct
6806 3601 gcactatgaa gccacagctg ctgctctgag gaagaagcat gcggacagcg tggctgagat
6807 3661 gggggagcag ctggacaacc tgcagcgcgt caagcagaaa ctggaaaagg agaaaagcga
6808 3721 gctgaaaatg gaagtggatg atctgacatc caacatggag caaacggtta agggaaaagc
6809 3781 aaatgcagaa aaactttgtc gcacttatga agatcatctt aatgagacaa aaactaaact
6810 3841 ggatgaaatg actcgcctca tgaatgacct cactactcaa aagacaaaac tccagagtga
6811 3901 gaatggtgaa tttgtaagac agcttgaaga gaaagagtcg ctgataagtc agctgtcccg
6812 3961 aggaaaaaca tcatttacac agcagattga agaacttagg agacagctag aagaggaaac
6813 4021 caagtccaaa aatgctctgg ctcatgccct gcaagcagcc aggcatgact gtgatctctt
6814 4081 gcgagaacag tacgaggagg agcaagaagc caaggcagag ctgcagcggg ctctctccaa
6815 4141 gggaaatgca gaagtggcac aatggagaac aaagtatgaa actgatgcca ttcagaggac
6816 4201 tgaggaactg gaagatgcca aaaaaaagct tgctgcccgc ctgcaagaag ctgaggaagc
6817 4261 aattgaagct gccaacgcca agtgctcttc tctggaaaag acaaagcaca ggctgcagaa
6818 4321 cgagctggaa gatatgatga ttgatctgga aaaggccaac tcagcggctg cctccctgga
6819 4381 caagaagcag cgtggctttg acaagatcat caatgactgg aagcagaagt atgaagagtc
6820 4441 acaggctgag ctggaagctt cccagaagga ggcccgcagc ctcagcaccg agctcttcaa
6821 4501 gctgaagaat gcctatgaag agacactgga ccatctggag actctgaaac gggaaaacaa
6822 4561 gaacctccaa gaggaaattt ctgatctgac caatcagatc agtgaaggaa acaagaacct
6823 4621 ccatgagata gaaaaagtca agaagcaggt agaacaagaa aagtcagagg ttcagctagc
6824 4681 tctggaagaa gcagagggag ctttggagca tgaagaaagc aagacccttc gttttcagct
6825 4741 tgagctttct cagcttaaag ctgattttga aaggaagctg gcagaaaagg atgaagaaat
6826 4801 ggaaaatata aggaggaacc aacaacgcac catagattct ctgcagtcca cccttgattc
6827 4861 tgaagcccgg agcagaaatg aggccatccg gctgaagaag aagatggaag gagacctcaa
6828 4921 cgagatggaa atccagctca gccatgctaa caggcatgct gcagaagcaa ccaagtcagc
6829 4981 acgtggcctg cagacacaaa tcaaggagct ccaggtgcag ctggatgact tgggacacct
6830 5041 gaatgaagac ttgaaggagc agctggcagt ctctgacagg aggaacaacc ttctccagtc
6831 5101 agagctggat gagctgaggg ctttgctgga ccagactgaa cgggcgagga agctggctga
6832 5161 gcatgagcta ctggaagcca ccgaacgtgt gaacctgctg catactcaga acacaagcct
6833 5221 gatcaatcag aagaagaaac tggagggtga catatcccag atgcagaatg aagtggagga
6834 5281 atcaatccag gagtgccgga acgcagagga aaaagccaaa aaagcgatca cagatgcagc
6835 5341 aatgatggct gaggagctta aaaaggagca agatactagt gctcacttgg agagaatgaa
6836 5401 gaagaacatg gaacaaacca ttaaagatct gcagaaacga ctggatgaag cagaacaaat
6837 5461 agccctgaaa ggtggcaaga aacagatcca gaaactggaa tccagggttc gtgagctgga
6838 5521 gaatgaactt gagaatgaac tccgccgcaa ttcagatgcc caaaagggag cccgcaagtt
6839 5581 tgagaggcgc ataaaggagg tgacttatca gtcagaagaa gataagaaaa atctggcccg
6840 5641 aatgcaggat ctgatagata agctacaact aaaagtgaag agctacaaac accaagcaga
6841 5701 ggaagccgaa gcacaagcca atctgtacct ttcgaagtac agaaaacagc aacatgatct
6842 5761 ggacgatgct gaagaaaggg cagaaatagc tgaatctcaa gttaacaagc tgaggagcaa
6843 5821 gtcaagggat attggcatga aaaaggttca tgaagaggag taagtgcggt cctggctccc
6844 5881 agatataaga tgatgattca tacaatcagg tataaccaaa agcagatgta ttaaaacaaa
6845 5941 actaaaacga gcacttacaa aaataaatat caagtgcaaa ccaaaaaaaa aa
6846 //
6847
6848 LOCUS NM_001318982 2525 bp mRNA linear VRT 04-JAN-2017
6849 DEFINITION Gallus gallus LOC768735 (LOC768735), mRNA.
6850 ACCESSION NM_001318982 XM_001231337
6851 VERSION NM_001318982.1
6852 KEYWORDS RefSeq.
6853 SOURCE Gallus gallus (chicken)
6854 ORGANISM Gallus gallus
6855 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6856 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6857 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6858 Phasianidae; Phasianinae; Gallus.
6859 REFERENCE 1 (bases 1 to 2525)
6860 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
6861 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
6862 P, Hayashizaki Y and Buerstedde JM.
6863 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
6864 gene function analysis
6865 JOURNAL Genome Biol. 6 (1), R6 (2005)
6866 PUBMED 15642098
6867 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
6868 NCBI review. The reference sequence was derived from AJ720383.1.
6869 On Jan 20, 2016 this sequence version replaced gi:971379539.
6870
6871 ##Evidence-Data-START##
6872 Transcript exon combination :: AJ720383.1, AJ447388.1 [ECO:0000332]
6873 RNAseq introns :: single sample supports all introns
6874 SAMEA2201358, SAMEA2201361
6875 [ECO:0000348]
6876 ##Evidence-Data-END##
6877 FEATURES Location/Qualifiers
6878 source 1..2525
6879 /organism="Gallus gallus"
6880 /mol_type="mRNA"
6881 /db_xref="taxon:9031"
6882 /chromosome="2"
6883 /map="2"
6884 /breed="Leghorn"
6885 gene 1..2525
6886 /gene="LOC768735"
6887 /gene_synonym="CTC-575C13.4; CTD-2561J22.3"
6888 /note="LOC768735"
6889 /db_xref="CGNC:54710"
6890 /db_xref="GeneID:768735"
6891 CDS 36..1613
6892 /gene="LOC768735"
6893 /gene_synonym="CTC-575C13.4; CTD-2561J22.3"
6894 /EC_number="2.7.1.21"
6895 /codon_start=1
6896 /product="LOC768735"
6897 /protein_id="NP_001305911.1"
6898 /db_xref="CGNC:54710"
6899 /db_xref="GeneID:768735"
6900 /translation="MASHMEEPVTFEDIAIYLSRAEWDMVAEEQRELYRSVMLDNYEL
6901 LASLGYPGPKPDILHRLERGEEPWVNTPQSTVKWDGPDRPLGLNGYKRWLAESCSSRW
6902 LDADKHKVLEETNPPSHGERCEPWRLRSSRLLKKFGCLEGRSELRSEAASSQPAPEGS
6903 QEKARMGCLTRNLETEGKQGIKTELAQSMGNVASCKRLHDNCTDTFQGTVEKPHHVLE
6904 EVSVFQANREYRESSTEDVIKTVLEDHCYCVSNALPWTVFSRALREHDYCSNNNSDSS
6905 VLRDHEYCQVQRFPYRDRIRKVVCRTCRARARAYRLAKRKSYVERIIWKAKRSVRFLK
6906 STFKSLWFPRAFFCTKSLSASPVSSSVPLARADNSTKETCGTFCPPAEQVVVPQQSQK
6907 KEDSQEVAVLPQPEKEHSQEETSEAHSAPAAPVESAAAPPAPREAAEVQGEAAQPEVL
6908 VHQGMQEAKLIHEADTQQNTERYKIINPSCVLLHDAYEMVVWTVDHMLESVCQAFELG
6909 GYTLCKEMRPVITQSDS"
6910 ORIGIN
6911 1 agagtgtaga ggtttgcgag gccttcacag gcgtcatggc ctcgcacatg gaggagcctg
6912 61 tgacctttga ggacatcgcc atctatctga gccgcgcaga gtgggacatg gttgcagagg
6913 121 agcagaggga gctgtaccgc agcgtcatgc tggacaacta tgagctcttg gcatcactgg
6914 181 gatacccagg ccccaaacct gacattctgc atcggctgga gcgtggggaa gagccatggg
6915 241 tcaacacacc acagagcaca gtgaagtggg atggacctga cagacctctt ggactcaatg
6916 301 ggtacaagag atggctggca gagtcgtgct ccagcaggtg gctggatgct gacaagcaca
6917 361 aggtgctgga ggagacaaac ccccccagcc atggagaacg atgtgagccg tggcggctac
6918 421 ggtctagcag actgctgaag aagtttgggt gcctcgaggg taggagtgag ttgcgatcag
6919 481 aggcagccag cagccagcca gcgccagagg gaagccaaga gaaggcacgg atgggctgtt
6920 541 tgaccaggaa tttagaaacg gaaggtaaac aagggatcaa gacagaatta gcacaaagca
6921 601 tgggaaatgt ggcttcttgc aagcgtctgc atgataactg cacagacacc tttcaaggga
6922 661 ctgtagaaaa accacatcat gttttagagg aagtaagtgt tttccaggca aacagggaat
6923 721 acagggaatc ttctactgag gatgtgatca aaactgttct ggaagaccac tgttactgtg
6924 781 tgagtaatgc actgccctgg actgtatttt cacgtgctct gagagaacat gactactgca
6925 841 gtaacaataa tagtgattcc tcagtgctca gagaccacga atactgtcag gtacaaaggt
6926 901 ttccttatcg ggacagaatc cgtaaagttg tttgccgtac ttgcagggct cgtgccagag
6927 961 cttataggct agcaaagcga aaatcctatg tagagcgtat catctggaaa gctaagcgaa
6928 1021 gtgtgcgatt tctcaagtcc accttcaaaa gcttgtggtt tcctcgagct ttcttctgca
6929 1081 caaaatctct ttctgcatct cctgtgtcgt catctgttcc tctggctagg gcagataact
6930 1141 ccacgaagga aacttgtggg acgttttgtc ctcctgcaga gcaggtggtt gtgccccaac
6931 1201 agtctcagaa gaaagaagac tcccaagagg tggctgtgct cccacagcct gagaaggagc
6932 1261 actctcagga ggagacatca gaagcacaca gtgcccctgc tgcacctgtt gaatcagcag
6933 1321 ctgcaccccc agcccccagg gaagctgcag aggtgcaggg ggaagcggca caacctgagg
6934 1381 tgcttgtgca ccaagggatg caggaggcaa aattgatcca tgaagctgac actcagcaaa
6935 1441 acacagaaag atacaaaatc attaatccaa gttgcgtatt gctgcacgat gcttatgaaa
6936 1501 tggtcgtgtg gactgttgat cacatgctgg aatctgtatg ccaggcattt gagcttggtg
6937 1561 gctatactct gtgtaaggag atgaggcctg tgattaccca gtctgacagc tgaccaccag
6938 1621 aacatgagca gctgtgcctg ctctgtcatg gtgaacagac agaaccctgc agcaagaccc
6939 1681 actaatgtgg cttcgcaata gaaactgaaa ggtgtactaa aggatcagtg cgtaaatgga
6940 1741 tactaccacg taaatggatg caaaacgtgg cttgtagcac ctgctgggaa aagtgttatc
6941 1801 acttgggagg cttcagggaa aagccagagg aagagaacaa gcaggactgg tgcaagtaaa
6942 1861 agaggaagaa gcctgggaaa acttataaga gatgggagaa taagggcagc tgtgtgttag
6943 1921 caggctgctg tctggtgtac tttctggctc agctgtgtgt gatcactgtg tagtttctcc
6944 1981 ttgttaaacc attgccacct gtttgtgtga gcacatgctc acgtgtgtca gcatgcgagc
6945 2041 tgtgcttgct tgccagggct ggacctggca gaaagggatc tgaggctgcc gtactcaact
6946 2101 ctgcctcagt acaggcactg tgtgtgatgt cctgggctct ccctctcata atttaagcct
6947 2161 tttgaacacg ggaattctta agatggaacg atatatattt tttttttaag agactgcaca
6948 2221 tctgcctgtt ttgaaagcag gtggggatgt atcacgcaaa gccttgctgc attctaatgt
6949 2281 gaaagctatt ggaaaaaaaa tcattgcagt gggaggtgag gttctgatag tgggaaggct
6950 2341 gcgaaaagat gctggggctg ccctgtacca gtgcagccac atccagcagc ccggccacac
6951 2401 agagtggtag agcccagcaa ctgagatggc ggggcctttt aattggtctt tgttctcact
6952 2461 acccaactgt attttcattg gcaataaaat gaacttttcc ccaggttgaa aaaaaaaaaa
6953 2521 aaaaa
6954 //
6955
6956 LOCUS NM_001318432 969 bp mRNA linear VRT 04-JAN-2017
6957 DEFINITION Gallus gallus histamine N-methyltransferase-like (LOC771456), mRNA.
6958 ACCESSION NM_001318432
6959 VERSION NM_001318432.1
6960 KEYWORDS RefSeq.
6961 SOURCE Gallus gallus (chicken)
6962 ORGANISM Gallus gallus
6963 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
6964 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
6965 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
6966 Phasianidae; Phasianinae; Gallus.
6967 REFERENCE 1 (bases 1 to 969)
6968 AUTHORS Drozak J, Chrobok L, Poleszak O, Jagielski AK and Derlacz R.
6969 TITLE Molecular identification of carnosine N-methyltransferase as
6970 chicken histamine N-methyltransferase-like protein (hnmt-like)
6971 JOURNAL PLoS ONE 8 (5), E64805 (2013)
6972 PUBMED 23705015
6973 REMARK GeneRIF: carnosine N-methyltransferase was purified from chicken
6974 muscle, a rich source of the enzyme, characterized and identified
6975 using mass spectrometry analysis.
6976 GeneRIF: Chicken histamine N-methyltransferase-like gene encodes
6977 carnosine N-methyltransferase that catalyzes the transfer of methyl
6978 group of S-adenosyl-L-methionine to carnosine, yielding anserine.
6979 Publication Status: Online-Only
6980 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
6981 NCBI review. The reference sequence was derived from KF271750.1.
6982
6983 ##Evidence-Data-START##
6984 Transcript exon combination :: KF271750.1 [ECO:0000332]
6985 RNAseq introns :: single sample supports all introns
6986 SAMEA2201363, SAMEA2201366
6987 [ECO:0000348]
6988 ##Evidence-Data-END##
6989 FEATURES Location/Qualifiers
6990 source 1..969
6991 /organism="Gallus gallus"
6992 /mol_type="mRNA"
6993 /db_xref="taxon:9031"
6994 /chromosome="7"
6995 /map="7"
6996 gene 1..969
6997 /gene="LOC771456"
6998 /gene_synonym="HNMT-like"
6999 /note="histamine N-methyltransferase-like"
7000 /db_xref="CGNC:56790"
7001 /db_xref="GeneID:771456"
7002 CDS 1..969
7003 /gene="LOC771456"
7004 /gene_synonym="HNMT-like"
7005 /EC_number="2.1.1.22"
7006 /function="catalyzes the transfer of methyl group of
7007 S-adenosyl-L-methionine to carnosine yielding anserine"
7008 /codon_start=1
7009 /product="carnosine N-methyltransferase 2"
7010 /protein_id="NP_001305361.1"
7011 /db_xref="CGNC:56790"
7012 /db_xref="GeneID:771456"
7013 /translation="MEPTPEMKRNRLPSMNFEAEILADPHDNSELYVIPSMRSLTAEE
7014 YVEAFQSFLDHSTEHQCMDEFNKEVMPHIMAGLGNGKSTINILGVGSGTGEQDLKMIQ
7015 ILQAAHPGVLINNEIIEPNPQHVAAYKELVNRAPDLQGVSFTWHQLTSSEYEQQVKEK
7016 NTHKKFDFIHMIQMLYRVEDIPNTIKFFHSCLNHQGKLLIIILSDSSGWASLWKKYRH
7017 CLPSTDSGHYITSDSITAVLRKLGIKYHVYEFPSGWDITECFIEGDPAGGHMMDFLTG
7018 TKNFLGTAPAALRSRLQEALCQPECSSRKDGRVIFCNNLSMIVAES"
7019 ORIGIN
7020 1 atggagccca cccctgagat gaagaggaat aggttaccca gcatgaactt tgaagcagag
7021 61 attctggcag atccacacga taattcagag ctgtatgtca tcccttccat gagaagtctc
7022 121 acggctgagg agtatgtaga ggcctttcag tcatttttgg atcactcaac agagcaccag
7023 181 tgcatggatg agttcaacaa ggaggtgatg ccacacatca tggctggtct cggcaatgga
7024 241 aaatcgacta taaacattct gggagtgggg agcggcacag gtgaacagga tctgaaaatg
7025 301 atccagatcc tgcaggctgc acacccaggg gtccttatca acaacgaaat catagagccc
7026 361 aacccacagc acgtggccgc ctacaaagag ctggttaatc gagctccaga tctgcagggg
7027 421 gtctctttta cttggcacca gcttacttcc tcagagtatg aacaacaggt gaaagagaaa
7028 481 aacacacaca agaagttcga cttcatccat atgattcaga tgctgtaccg tgtggaagat
7029 541 attcctaaca ccatcaagtt tttccacagc tgcctcaacc atcagggcaa actcctgatc
7030 601 ataattctgt cagacagcag cggttgggcc agcttatgga agaagtacag gcattgcttg
7031 661 ccttcaaccg acagcggcca ctacatcacc tccgacagca tcacggcagt gctgaggaag
7032 721 ctcggcatca agtaccacgt ttatgagttc ccatcgggct gggacatcac cgagtgcttt
7033 781 attgaggggg acccagccgg aggccatatg atggatttcc tgacggggac aaaaaacttc
7034 841 ctgggcacag caccggcagc tctgcggagc cgtctgcagg aggctctctg ccagcccgaa
7035 901 tgcagcagca ggaaggacgg gagagtcatt ttctgcaaca atctcagtat gatcgtagcg
7036 961 gaatcctaa
7037 //
7038
7039 LOCUS NM_001317736 2344 bp mRNA linear VRT 04-JAN-2017
7040 DEFINITION Gallus gallus transmembrane protein 136 family member 1
7041 (TMEM136-1), mRNA.
7042 ACCESSION NM_001317736 XM_417891
7043 VERSION NM_001317736.1
7044 KEYWORDS RefSeq.
7045 SOURCE Gallus gallus (chicken)
7046 ORGANISM Gallus gallus
7047 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7048 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7049 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7050 Phasianidae; Phasianinae; Gallus.
7051 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7052 preliminary review. The reference sequence was derived from
7053 AADN04000115.1.
7054 On Dec 5, 2015 this sequence version replaced gi:513222209.
7055
7056 Sequence Note: The RefSeq transcript and protein were derived from
7057 genomic sequence to make the sequence consistent with the reference
7058 genome assembly. The genomic coordinates used for the transcript
7059 record were based on alignments.
7060
7061 ##Evidence-Data-START##
7062 Transcript exon combination :: BM440371.1 [ECO:0000332]
7063 RNAseq introns :: single sample supports all introns
7064 SAMN02738216, SAMN02738218
7065 [ECO:0000348]
7066 ##Evidence-Data-END##
7067 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7068 1-73 AADN04000115.1 1471604-1471676 c
7069 74-273 AADN04000115.1 1471314-1471513 c
7070 274-2344 AADN04000115.1 1468686-1470756 c
7071 FEATURES Location/Qualifiers
7072 source 1..2344
7073 /organism="Gallus gallus"
7074 /mol_type="mRNA"
7075 /db_xref="taxon:9031"
7076 /chromosome="24"
7077 /map="24"
7078 /breed="Red Jungle Fowl"
7079 gene 1..2344
7080 /gene="TMEM136-1"
7081 /gene_synonym="null; TMEM136"
7082 /note="transmembrane protein 136 family member 1"
7083 /db_xref="CGNC:66350"
7084 /db_xref="GeneID:419753"
7085 misc_feature 27..29
7086 /gene="TMEM136-1"
7087 /gene_synonym="null; TMEM136"
7088 /note="upstream in-frame stop codon"
7089 CDS 78..812
7090 /gene="TMEM136-1"
7091 /gene_synonym="null; TMEM136"
7092 /codon_start=1
7093 /product="transmembrane protein 136 family member 1"
7094 /protein_id="NP_001304665.1"
7095 /db_xref="CGNC:66350"
7096 /db_xref="GeneID:419753"
7097 /translation="MLPIALEVLGSLLAWLCLYAAFCLWNRHRSPEWNCRLVTLLHGA
7098 TATCLSGYIALWDGPWPLSHAGSPNTALQVHVLSLTLGYFIFDLLWCLYFQTEGDLML
7099 LHHTLSICGMVLVLGLGKSATEVNAVVFVSEITNPLLQTRWFLREMGCYHSFLGEVVD
7100 FCFVLLFLVLRIGGGALIMYAMVTAPDPNWILKGGGLAMYIVSLGFMVEICRFVRRKM
7101 LKKYHSWRRLRSEDAPVKTNGHLAAH"
7102 ORIGIN
7103 1 aagaagggcg tatggggaag cggtgctgag aggagccggc tgcgttcagc cccgcgctgt
7104 61 gctcgtgggg aggcaggatg ctccccatcg ccctcgaggt gctcggcagc ctcctggcct
7105 121 ggctgtgcct ctatgctgct ttctgcctct ggaacaggca ccgctccccc gagtggaact
7106 181 gccgcctggt caccctgctg cacggggcca ccgccacctg cctgtccggg tacatcgccc
7107 241 tctgggacgg cccctggcct ctgagccatg caggttcacc aaacaccgct ctccaggtcc
7108 301 acgtgctgtc cctgacgttg ggttacttca tcttcgacct gctctggtgc ttgtacttcc
7109 361 agacagaggg agacctgatg ctgctccatc acacgctgag catctgcggc atggtgctgg
7110 421 tgctggggct gggcaagtct gccaccgagg tcaacgcggt ggtgtttgtc agtgagatca
7111 481 ccaaccctct gctgcagacc cgctggttcc tgcgggagat gggctgctac cactccttcc
7112 541 tgggggaggt ggtggatttc tgcttcgtgc tcctcttcct ggtgctgcgc attggcggag
7113 601 gagctctgat catgtacgcc atggtgacgg ccccggatcc caactggatc ctcaaggggg
7114 661 gaggcctggc catgtacatc gtgtccttgg ggttcatggt tgagatctgc cgcttcgtta
7115 721 ggaggaagat gttgaaaaag taccattcct ggaggcgcct gaggagtgag gatgcacccg
7116 781 tgaaaacaaa tgggcacttg gcagctcact gacggtggct gctgtggatg gggccccggc
7117 841 tgctggagcc tgtaactgtg acaagagctc ctaaaagtgg tgtggaaatg acatcctggc
7118 901 actggcagct ctctacaagc cctggggaag atggatggtc actcagcatg tgggaaagct
7119 961 gaccaaatag ggatttcagc ataggagcat agcgtgtctg ctgagcggct gtccctgact
7120 1021 gctccctctt ccagcccata gtgcacagcc tgactgatcc atgatcgtgt tggaggcagt
7121 1081 gttatctcac agtgcagttg gaatatctga tctggaacat ctcaccctct ccccagtgga
7122 1141 gccaggtgtg ggtgtgaccc agccaggatg tactcagcgt tgttctccct tcaaatggga
7123 1201 caaaacattg gaccaagtac atgaatgaga ctttgtgagc aaggctgaag tgcccacagg
7124 1261 gggacagcgg ggttgtcctt ggtgtgaagt gatgctgctg tggtacgtga gggtgaggca
7125 1321 atgttctacc tcattgtttt tagcaataca tttccttcct tttaatactt gcattcaagg
7126 1381 agatactgat cttggagcag tgtgacttca ctgggttgga cagtgcacac ctctgttcct
7127 1441 tacaaacagg agtctggaac cagacctgtg ctgaacacct cctcacagag cgcatcacct
7128 1501 caccttgcac tgctttcaga aactcgggtg ctgtgtgtgt gagggctgac agagcagaac
7129 1561 cctctctgga tgctctgtct gtcccggagc tgacttgctg caggccagga atgctgaatg
7130 1621 caatgcagac aggagcctgg tgttcatttc caggggtggc agcgatgttg aggtggatct
7131 1681 cagtgcgaca tcactccata cagttctcag catatggatc agttctcttc tttacctctc
7132 1741 agaattgtgt tctgactttc ccctggggtc gtaatgtgaa tttcccttca ctcatgtagc
7133 1801 agcatcctgc tggagctcga gagcccccgg agctcctggt ggcctttgcc ccacgtgtca
7134 1861 ctgctgtggg gtgcaggagg ggagtggctg tgtcacccct ctgcccttat cttgccagct
7135 1921 gggctctact cagcactgat acctgggctg cgaggtgtct ggagagataa aagctaatag
7136 1981 catgaatgga ctgagctttt aggtgtgtcc tctggatgcc acgcagaccc caggcatgca
7137 2041 gcaggtctat ggggtcgggc agatggagcc tggcaatcct ggggggaggg cacttcggag
7138 2101 ccatgggttg ctgtcagagc tccccatagt gagcagactt ccaataaagg tgcattctca
7139 2161 ttttaaaagg gaacagttgc tgtagcattc ttttgttctg ggtctgaagg aggcagctgg
7140 2221 agctaacgag gctgggccgg atggggcagc ccggtctggt ggtcggaacc ccgctgtacc
7141 2281 ccagttgttc catgcagaac accccttccc acagggctgg gaagcaatgt gccctcgggt
7142 2341 ggtc
7143 //
7144
7145 LOCUS NM_001305110 1304 bp mRNA linear VRT 04-JAN-2017
7146 DEFINITION Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
7147 variant 2, mRNA.
7148 ACCESSION NM_001305110 XM_004940252
7149 VERSION NM_001305110.1
7150 KEYWORDS RefSeq.
7151 SOURCE Gallus gallus (chicken)
7152 ORGANISM Gallus gallus
7153 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7154 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7155 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7156 Phasianidae; Phasianinae; Gallus.
7157 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7158 preliminary review. The reference sequence was derived from
7159 BU369494.1, BX929701.2 and AADN04000375.1.
7160 On Feb 25, 2015 this sequence version replaced gi:513177299.
7161
7162 Transcript Variant: This variant (2) uses an alternate splice site
7163 in its 5' UTR compared to variant 1. Variants 1 and 2 encode the
7164 same protein.
7165
7166 Sequence Note: This RefSeq record was created from transcript data
7167 from different strains because no single transcript from the same
7168 strain was available for the full length of the gene. The extent of
7169 this transcript is supported by transcript alignments and
7170 orthologous data.
7171
7172 ##Evidence-Data-START##
7173 Transcript exon combination :: BU369494.1, BX929701.2 [ECO:0000332]
7174 RNAseq introns :: single sample supports all introns
7175 SAMN02729317, SAMN03354467
7176 [ECO:0000348]
7177 ##Evidence-Data-END##
7178 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7179 1-7 BU369494.1 1-7
7180 8-1233 BX929701.2 1-1226
7181 1234-1304 AADN04000375.1 1027885-1027955 c
7182 FEATURES Location/Qualifiers
7183 source 1..1304
7184 /organism="Gallus gallus"
7185 /mol_type="mRNA"
7186 /db_xref="taxon:9031"
7187 /chromosome="3"
7188 /map="3"
7189 /breed="Leghorn"
7190 gene 1..1304
7191 /gene="ECHDC1"
7192 /gene_synonym="MMCD"
7193 /note="ethylmalonyl-CoA decarboxylase 1"
7194 /db_xref="CGNC:54924"
7195 /db_xref="GeneID:769021"
7196 CDS 67..969
7197 /gene="ECHDC1"
7198 /gene_synonym="MMCD"
7199 /EC_number="4.1.1.41"
7200 /EC_number="4.1.1.94"
7201 /note="isoform 1 is encoded by transcript variant 2; enoyl
7202 Coenzyme A hydratase domain containing 1;
7203 methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
7204 domain containing 1"
7205 /codon_start=1
7206 /product="ethylmalonyl-CoA decarboxylase isoform 1"
7207 /protein_id="NP_001292039.1"
7208 /db_xref="CGNC:54924"
7209 /db_xref="GeneID:769021"
7210 /translation="MAVFLWRNLFQTTKARMLQQRRASLYNGAHDYDEELIKKKLQQF
7211 AGGSISLSKEHSGIGILTLNNSRLMNAFTGTMMLELQERVTELENWKDGKGLIICGAG
7212 NTFCSGSDLNAVKAISNSQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELT
7213 TACDFRLMTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERAL
7214 HLGLSEGTLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTE
7215 KDVFGTVWGGPANLEALTRRQKHK"
7216 mat_peptide 67..960
7217 /gene="ECHDC1"
7218 /gene_synonym="MMCD"
7219 /product="Ethylmalonyl-CoA decarboxylase"
7220 /experiment="experimental evidence, no additional details
7221 recorded"
7222 /note="propagated from UniProtKB/Swiss-Prot (F1NB38.2)"
7223 ORIGIN
7224 1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tggtttcttt
7225 61 ccagaaatgg cagttttcct atggagaaac ttgtttcaga ctacaaaggc aaggatgcta
7226 121 cagcagagaa gggcatcgct gtataatggt gctcatgact atgatgaaga attgataaag
7227 181 aagaaacttc agcagtttgc tggtggatcc atcagccttt ccaaagaaca cagtggcatt
7228 241 ggaatactta ccttgaacaa ctcccgacta atgaatgcct tcacaggtac tatgatgcta
7229 301 gaactccagg agagagtaac tgaactggaa aactggaagg atggcaaagg ccttatcatc
7230 361 tgtggtgcag gaaacacttt ttgttcagga tctgatttga atgctgtcaa agcaatatcc
7231 421 aattcccagg atgggatgaa tatgtgcatg tttatgcaaa ataccttaac cagactcatg
7232 481 aggttgccat tgatcagcat tgcactaatc caaggaaaag ctcttggagg aggagcggaa
7233 541 cttaccacag catgtgattt caggttgatg acgccaggca gtgagattcg atttgtccat
7234 601 aagcacatgg gcctggtgcc aggctgggga ggagccacca ggctggtgcg aatcattggc
7235 661 agtagagctg ccctccagct gctgagcagg gctcatgggg tggaccctga gagagcactg
7236 721 catctcggac tgtcagaggg gaccttgtct tcttcagatg aaaccggatc gctagaagaa
7237 781 gctcgagcct ggctgagtca gtacacagag ggtccagcta gtgtgataca ggctgtgaaa
7238 841 aaggtggtca cggctggaag agaactgcca ctggaagctg ccctaaggac agagaaggat
7239 901 gtttttggaa ctgtgtgggg tgggcctgcc aatttggagg cactgactag aagacaaaag
7240 961 cataaataat ggccaataca taataaatat tcttgatatt ttacacacga agctttcaca
7241 1021 aaagcagaca atagattgaa tcgtttaatg ccagtttaaa ggagcaagtt cttagcattc
7242 1081 ctgtcgttca cgtctggcag acttatttgg tgtgcaacca cagagtaatc cccagaagat
7243 1141 cctttactgt tctaatcacc cactgaatgg agattagtga aattcgtatg taaaggtaaa
7244 1201 tactgggctt agaacagaat ataattattt tgcaatgagg ctgaagatta ttttctttgg
7245 1261 aataattttg ttttttctaa ctgatataga aatgaattgt gtga
7246 //
7247
7248 LOCUS NM_001305109 1308 bp mRNA linear VRT 04-JAN-2017
7249 DEFINITION Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
7250 variant 1, mRNA.
7251 ACCESSION NM_001305109 XM_001231582
7252 VERSION NM_001305109.1
7253 KEYWORDS RefSeq.
7254 SOURCE Gallus gallus (chicken)
7255 ORGANISM Gallus gallus
7256 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7257 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7258 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7259 Phasianidae; Phasianinae; Gallus.
7260 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7261 preliminary review. The reference sequence was derived from
7262 BU369494.1, BX929701.2, CD761561.1 and AADN04000375.1.
7263 On Feb 24, 2015 this sequence version replaced gi:513177293.
7264
7265 Transcript Variant: This variant (1) represents the longest
7266 transcript. Variants 1 and 2 encode the same protein.
7267
7268 Sequence Note: This RefSeq record was created from transcript data
7269 from different strains because no single transcript from the same
7270 strain was available for the full length of the gene. The extent of
7271 this transcript is supported by transcript alignments and
7272 orthologous data.
7273
7274 ##Evidence-Data-START##
7275 Transcript exon combination :: CD761561.1 [ECO:0000332]
7276 RNAseq introns :: single sample supports all introns
7277 SAMEA2201361, SAMEA2201363
7278 [ECO:0000348]
7279 ##Evidence-Data-END##
7280 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7281 1-7 BU369494.1 1-7
7282 8-52 BX929701.2 1-45
7283 53-61 CD761561.1 11-19
7284 62-1237 BX929701.2 51-1226
7285 1238-1308 AADN04000375.1 1027885-1027955 c
7286 FEATURES Location/Qualifiers
7287 source 1..1308
7288 /organism="Gallus gallus"
7289 /mol_type="mRNA"
7290 /db_xref="taxon:9031"
7291 /chromosome="3"
7292 /map="3"
7293 /breed="Leghorn"
7294 gene 1..1308
7295 /gene="ECHDC1"
7296 /gene_synonym="MMCD"
7297 /note="ethylmalonyl-CoA decarboxylase 1"
7298 /db_xref="CGNC:54924"
7299 /db_xref="GeneID:769021"
7300 CDS 71..973
7301 /gene="ECHDC1"
7302 /gene_synonym="MMCD"
7303 /EC_number="4.1.1.41"
7304 /EC_number="4.1.1.94"
7305 /note="isoform 1 is encoded by transcript variant 1; enoyl
7306 Coenzyme A hydratase domain containing 1;
7307 methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
7308 domain containing 1"
7309 /codon_start=1
7310 /product="ethylmalonyl-CoA decarboxylase isoform 1"
7311 /protein_id="NP_001292038.1"
7312 /db_xref="CGNC:54924"
7313 /db_xref="GeneID:769021"
7314 /translation="MAVFLWRNLFQTTKARMLQQRRASLYNGAHDYDEELIKKKLQQF
7315 AGGSISLSKEHSGIGILTLNNSRLMNAFTGTMMLELQERVTELENWKDGKGLIICGAG
7316 NTFCSGSDLNAVKAISNSQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELT
7317 TACDFRLMTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERAL
7318 HLGLSEGTLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTE
7319 KDVFGTVWGGPANLEALTRRQKHK"
7320 mat_peptide 71..964
7321 /gene="ECHDC1"
7322 /gene_synonym="MMCD"
7323 /product="Ethylmalonyl-CoA decarboxylase"
7324 /experiment="experimental evidence, no additional details
7325 recorded"
7326 /note="propagated from UniProtKB/Swiss-Prot (F1NB38.2)"
7327 ORIGIN
7328 1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcagttt
7329 61 ctttccagaa atggcagttt tcctatggag aaacttgttt cagactacaa aggcaaggat
7330 121 gctacagcag agaagggcat cgctgtataa tggtgctcat gactatgatg aagaattgat
7331 181 aaagaagaaa cttcagcagt ttgctggtgg atccatcagc ctttccaaag aacacagtgg
7332 241 cattggaata cttaccttga acaactcccg actaatgaat gccttcacag gtactatgat
7333 301 gctagaactc caggagagag taactgaact ggaaaactgg aaggatggca aaggccttat
7334 361 catctgtggt gcaggaaaca ctttttgttc aggatctgat ttgaatgctg tcaaagcaat
7335 421 atccaattcc caggatggga tgaatatgtg catgtttatg caaaatacct taaccagact
7336 481 catgaggttg ccattgatca gcattgcact aatccaagga aaagctcttg gaggaggagc
7337 541 ggaacttacc acagcatgtg atttcaggtt gatgacgcca ggcagtgaga ttcgatttgt
7338 601 ccataagcac atgggcctgg tgccaggctg gggaggagcc accaggctgg tgcgaatcat
7339 661 tggcagtaga gctgccctcc agctgctgag cagggctcat ggggtggacc ctgagagagc
7340 721 actgcatctc ggactgtcag aggggacctt gtcttcttca gatgaaaccg gatcgctaga
7341 781 agaagctcga gcctggctga gtcagtacac agagggtcca gctagtgtga tacaggctgt
7342 841 gaaaaaggtg gtcacggctg gaagagaact gccactggaa gctgccctaa ggacagagaa
7343 901 ggatgttttt ggaactgtgt ggggtgggcc tgccaatttg gaggcactga ctagaagaca
7344 961 aaagcataaa taatggccaa tacataataa atattcttga tattttacac acgaagcttt
7345 1021 cacaaaagca gacaatagat tgaatcgttt aatgccagtt taaaggagca agttcttagc
7346 1081 attcctgtcg ttcacgtctg gcagacttat ttggtgtgca accacagagt aatccccaga
7347 1141 agatccttta ctgttctaat cacccactga atggagatta gtgaaattcg tatgtaaagg
7348 1201 taaatactgg gcttagaaca gaatataatt attttgcaat gaggctgaag attattttct
7349 1261 ttggaataat tttgtttttt ctaactgata tagaaatgaa ttgtgtga
7350 //
7351
7352 LOCUS NM_001305111 1075 bp mRNA linear VRT 04-JAN-2017
7353 DEFINITION Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
7354 variant 3, mRNA.
7355 ACCESSION NM_001305111 XM_004940254
7356 VERSION NM_001305111.1
7357 KEYWORDS RefSeq.
7358 SOURCE Gallus gallus (chicken)
7359 ORGANISM Gallus gallus
7360 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7361 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7362 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7363 Phasianidae; Phasianinae; Gallus.
7364 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7365 preliminary review. The reference sequence was derived from
7366 BU369494.1, BX929701.2, BU129201.1 and AADN04000375.1.
7367 On Feb 24, 2015 this sequence version replaced gi:513177305.
7368
7369 Transcript Variant: This variant (3) lacks an alternate exon in the
7370 5' UTR and coding region and uses a downstream start codon compared
7371 to variant 1. It encodes isoform 2 which has a shorter N-terminus
7372 compared to isoform 1.
7373
7374 Sequence Note: This RefSeq record was created from transcript data
7375 from different strains because no single transcript from the same
7376 strain was available for the full length of the gene. The extent of
7377 this transcript is supported by transcript alignments and
7378 orthologous data.
7379
7380 ##Evidence-Data-START##
7381 Transcript exon combination :: BU129201.1 [ECO:0000332]
7382 RNAseq introns :: single sample supports all introns
7383 SAMN02729316, SAMN03354478
7384 [ECO:0000348]
7385 ##Evidence-Data-END##
7386 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7387 1-7 BU369494.1 1-7
7388 8-53 BX929701.2 1-46
7389 54-151 BU129201.1 21-118
7390 152-1004 BX929701.2 374-1226
7391 1005-1075 AADN04000375.1 1027885-1027955 c
7392 FEATURES Location/Qualifiers
7393 source 1..1075
7394 /organism="Gallus gallus"
7395 /mol_type="mRNA"
7396 /db_xref="taxon:9031"
7397 /chromosome="3"
7398 /map="3"
7399 /breed="Leghorn"
7400 gene 1..1075
7401 /gene="ECHDC1"
7402 /gene_synonym="MMCD"
7403 /note="ethylmalonyl-CoA decarboxylase 1"
7404 /db_xref="CGNC:54924"
7405 /db_xref="GeneID:769021"
7406 misc_feature 39..41
7407 /gene="ECHDC1"
7408 /gene_synonym="MMCD"
7409 /note="upstream in-frame stop codon"
7410 CDS 63..740
7411 /gene="ECHDC1"
7412 /gene_synonym="MMCD"
7413 /EC_number="4.1.1.41"
7414 /EC_number="4.1.1.94"
7415 /note="isoform 2 is encoded by transcript variant 3; enoyl
7416 Coenzyme A hydratase domain containing 1;
7417 methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
7418 domain containing 1"
7419 /codon_start=1
7420 /product="ethylmalonyl-CoA decarboxylase isoform 2"
7421 /protein_id="NP_001292040.1"
7422 /db_xref="CGNC:54924"
7423 /db_xref="GeneID:769021"
7424 /translation="MMLELQERVTELENWKDGKGLIICGAGNTFCSGSDLNAVKAISN
7425 SQDGMNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELTTACDFRLMTPGSEIRFV
7426 HKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERALHLGLSEGTLSSSDETGS
7427 LEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTEKDVFGTVWGGPANLEAL
7428 TRRQKHK"
7429 ORIGIN
7430 1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcaggta
7431 61 ctatgatgct agaactccag gagagagtaa ctgaactgga aaactggaag gatggcaaag
7432 121 gccttatcat ctgtggtgca ggaaacactt tttgttcagg atctgatttg aatgctgtca
7433 181 aagcaatatc caattcccag gatgggatga atatgtgcat gtttatgcaa aataccttaa
7434 241 ccagactcat gaggttgcca ttgatcagca ttgcactaat ccaaggaaaa gctcttggag
7435 301 gaggagcgga acttaccaca gcatgtgatt tcaggttgat gacgccaggc agtgagattc
7436 361 gatttgtcca taagcacatg ggcctggtgc caggctgggg aggagccacc aggctggtgc
7437 421 gaatcattgg cagtagagct gccctccagc tgctgagcag ggctcatggg gtggaccctg
7438 481 agagagcact gcatctcgga ctgtcagagg ggaccttgtc ttcttcagat gaaaccggat
7439 541 cgctagaaga agctcgagcc tggctgagtc agtacacaga gggtccagct agtgtgatac
7440 601 aggctgtgaa aaaggtggtc acggctggaa gagaactgcc actggaagct gccctaagga
7441 661 cagagaagga tgtttttgga actgtgtggg gtgggcctgc caatttggag gcactgacta
7442 721 gaagacaaaa gcataaataa tggccaatac ataataaata ttcttgatat tttacacacg
7443 781 aagctttcac aaaagcagac aatagattga atcgtttaat gccagtttaa aggagcaagt
7444 841 tcttagcatt cctgtcgttc acgtctggca gacttatttg gtgtgcaacc acagagtaat
7445 901 ccccagaaga tcctttactg ttctaatcac ccactgaatg gagattagtg aaattcgtat
7446 961 gtaaaggtaa atactgggct tagaacagaa tataattatt ttgcaatgag gctgaagatt
7447 1021 attttctttg gaataatttt gttttttcta actgatatag aaatgaattg tgtga
7448 //
7449
7450 LOCUS NM_001305112 932 bp mRNA linear VRT 04-JAN-2017
7451 DEFINITION Gallus gallus ethylmalonyl-CoA decarboxylase 1 (ECHDC1), transcript
7452 variant 4, mRNA.
7453 ACCESSION NM_001305112
7454 VERSION NM_001305112.1
7455 KEYWORDS RefSeq.
7456 SOURCE Gallus gallus (chicken)
7457 ORGANISM Gallus gallus
7458 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7459 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7460 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7461 Phasianidae; Phasianinae; Gallus.
7462 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7463 preliminary review. The reference sequence was derived from
7464 BU369494.1, BX929701.2, BU383248.1 and AADN04000375.1.
7465
7466 Transcript Variant: This variant (4) lacks two consecutive
7467 alternate exons in the 5' UTR and coding region and uses a
7468 downstream start codon compared to variant 1. It encodes isoform 3
7469 which has a significantly shorter N-terminus compared to isoform 1.
7470
7471 Sequence Note: This RefSeq record was created from transcript data
7472 from different strains because no single transcript from the same
7473 strain was available for the full length of the gene. The extent of
7474 this transcript is supported by transcript alignments and
7475 orthologous data.
7476
7477 ##Evidence-Data-START##
7478 Transcript exon combination :: BU383248.1 [ECO:0000332]
7479 RNAseq introns :: single sample supports all introns
7480 SAMEA2201357, SAMEA3109051
7481 [ECO:0000348]
7482 ##Evidence-Data-END##
7483 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7484 1-7 BU369494.1 1-7
7485 8-52 BX929701.2 1-45
7486 53-651 BU383248.1 24-622
7487 652-861 BX929701.2 1017-1226
7488 862-932 AADN04000375.1 1027885-1027955 c
7489 FEATURES Location/Qualifiers
7490 source 1..932
7491 /organism="Gallus gallus"
7492 /mol_type="mRNA"
7493 /db_xref="taxon:9031"
7494 /chromosome="3"
7495 /map="3"
7496 /breed="Leghorn"
7497 gene 1..932
7498 /gene="ECHDC1"
7499 /gene_synonym="MMCD"
7500 /note="ethylmalonyl-CoA decarboxylase 1"
7501 /db_xref="CGNC:54924"
7502 /db_xref="GeneID:769021"
7503 CDS 64..597
7504 /gene="ECHDC1"
7505 /gene_synonym="MMCD"
7506 /EC_number="4.1.1.41"
7507 /EC_number="4.1.1.94"
7508 /note="isoform 3 is encoded by transcript variant 4; enoyl
7509 Coenzyme A hydratase domain containing 1;
7510 methylmalonyl-CoA decarboxylase; enoyl CoA hydratase
7511 domain containing 1"
7512 /codon_start=1
7513 /product="ethylmalonyl-CoA decarboxylase isoform 3"
7514 /protein_id="NP_001292041.1"
7515 /db_xref="CGNC:54924"
7516 /db_xref="GeneID:769021"
7517 /translation="MNMCMFMQNTLTRLMRLPLISIALIQGKALGGGAELTTACDFRL
7518 MTPGSEIRFVHKHMGLVPGWGGATRLVRIIGSRAALQLLSRAHGVDPERALHLGLSEG
7519 TLSSSDETGSLEEARAWLSQYTEGPASVIQAVKKVVTAGRELPLEAALRTEKDVFGTV
7520 WGGPANLEALTRRQKHK"
7521 ORIGIN
7522 1 cccgctcgtc cggcagaggg aggggagccg tgctgtggtg agccgtgcct tgggcaggat
7523 61 gggatgaata tgtgcatgtt tatgcaaaat accttaacca gactcatgag gttgccattg
7524 121 atcagcattg cactaatcca aggaaaagct cttggaggag gagcggaact taccacagca
7525 181 tgtgatttca ggttgatgac gccaggcagt gagattcgat ttgtccataa gcacatgggc
7526 241 ctggtgccag gctggggagg agccaccagg ctggtgcgaa tcattggcag tagagctgcc
7527 301 ctccagctgc tgagcagggc tcatggggtg gaccctgaga gagcactgca tctcggactg
7528 361 tcagagggga ccttgtcttc ttcagatgaa accggatcgc tagaagaagc tcgagcctgg
7529 421 ctgagtcagt acacagaggg tccagctagt gtgatacagg ctgtgaaaaa ggtggtcacg
7530 481 gctggaagag aactgccact ggaagctgcc ctaaggacag agaaggatgt ttttggaact
7531 541 gtgtggggtg ggcctgccaa tttggaggca ctgactagaa gacaaaagca taaataatgg
7532 601 ccaatacata ataaatattc ttgatatttt acacacgaag ctttcacaaa agcagacaat
7533 661 agattgaatc gtttaatgcc agtttaaagg agcaagttct tagcattcct gtcgttcacg
7534 721 tctggcagac ttatttggtg tgcaaccaca gagtaatccc cagaagatcc tttactgttc
7535 781 taatcaccca ctgaatggag attagtgaaa ttcgtatgta aaggtaaata ctgggcttag
7536 841 aacagaatat aattattttg caatgaggct gaagattatt ttctttggaa taattttgtt
7537 901 ttttctaact gatatagaaa tgaattgtgt ga
7538 //
7539
7540 LOCUS NM_001305089 3510 bp mRNA linear VRT 04-JAN-2017
7541 DEFINITION Gallus gallus minichromosome maintenance 9 homologous recombination
7542 repair factor (MCM9), mRNA.
7543 ACCESSION NM_001305089 XM_003641032
7544 VERSION NM_001305089.1
7545 KEYWORDS RefSeq.
7546 SOURCE Gallus gallus (chicken)
7547 ORGANISM Gallus gallus
7548 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7549 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7550 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7551 Phasianidae; Phasianinae; Gallus.
7552 REFERENCE 1 (bases 1 to 3510)
7553 AUTHORS Nishimura K, Ishiai M, Horikawa K, Fukagawa T, Takata M, Takisawa H
7554 and Kanemaki MT.
7555 TITLE Mcm8 and Mcm9 form a complex that functions in homologous
7556 recombination repair induced by DNA interstrand crosslinks
7557 JOURNAL Mol. Cell 47 (4), 511-522 (2012)
7558 PUBMED 22771115
7559 REFERENCE 2 (bases 1 to 3510)
7560 CONSRTM International Chicken Genome Sequencing Consortium
7561 TITLE Sequence and comparative analysis of the chicken genome provide
7562 unique perspectives on vertebrate evolution
7563 JOURNAL Nature 432 (7018), 695-716 (2004)
7564 PUBMED 15592404
7565 REMARK Erratum:[Nature. 2005 Feb 17;433(7027):777]
7566 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7567 preliminary review. The reference sequence was derived from
7568 AB689141.1.
7569 On Feb 21, 2015 this sequence version replaced gi:513177436.
7570
7571 ##Evidence-Data-START##
7572 Transcript exon combination :: AB689141.1 [ECO:0000332]
7573 RNAseq introns :: single sample supports all introns
7574 SAMEA2201363, SAMEA2201366
7575 [ECO:0000348]
7576 ##Evidence-Data-END##
7577 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7578 1-3510 AB689141.1 1-3510
7579 FEATURES Location/Qualifiers
7580 source 1..3510
7581 /organism="Gallus gallus"
7582 /mol_type="mRNA"
7583 /db_xref="taxon:9031"
7584 /chromosome="3"
7585 /map="3"
7586 gene 1..3510
7587 /gene="MCM9"
7588 /note="minichromosome maintenance 9 homologous
7589 recombination repair factor"
7590 /db_xref="CGNC:66117"
7591 /db_xref="GeneID:100857742"
7592 CDS 1..3510
7593 /gene="MCM9"
7594 /EC_number="3.6.4.12"
7595 /note="DNA replication licensing factor MCM9;
7596 minichromosome maintenance complex component 9"
7597 /codon_start=1
7598 /product="DNA helicase MCM9"
7599 /protein_id="NP_001292018.1"
7600 /db_xref="CGNC:66117"
7601 /db_xref="GeneID:100857742"
7602 /translation="MALRADQVSLIGQVFESYLLQHHRDDILGILRQGDDEAHYPVLV
7603 DALTLFETNMEIGEYFNAFPSQVLPIFDGALRRAAMAVLQAATPSPELRMKPNLHARI
7604 SGLPICPELTREHIPKTRDVGHFLSVTGTVIRTSLVKVLEFERSYICNKCKHVFVAKA
7605 DFEQYYAFCRPSACLNEEGCNSTKFTCLSGTSSSPTSCRDYQEIKIQEQVQRLSVGSI
7606 PRCMVVVLEDDLVDSCKSGDDITVYGVVMQRWKPFHQDARCDLELVLKANYVKVNNEQ
7607 LAGVTIDEEVRKEFEDFWEKHRNNPLAGRNEILASLCPQVFGLYLVKLAVAMVLAGGV
7608 QRIDATGTRIRGESHLLLVGDPGTGKSQFLKYAVKITPRSVLTAGIGSTSAGLTVTAV
7609 KDFGEWNLEAGALVLADGGLCCIDEFNSIKEHDRTSIHEAMEQQTISVAKAGLVCKLN
7610 TRTTILAATNPKGHYDPAESVSVNIALGSPLLSRFDLVLVLLDTKNEEWDRIISSFIL
7611 QNKGCPSKSEKLWSMEKMKTYFCLIKRIQPKLSDESNLILVRYYQMQRQSDCRNAART
7612 TIRLLESLIRLAEAHARLMFRDTVTLEDAVTVVSVMESSMQGGALLGAINALHTSFPE
7613 NPMTQYRMQCELILERLELHDLLHKELQRLDRLQKETYCQLQPEETSFSTTTGCLNKN
7614 TFESKQQSQSEPSDQQKINSYPQPSLPKSNCEGDKHPEALRNPTPGNNISTKRLSRLN
7615 KRSDDGSLGWFDRLEDRNTDAEETFWKTSPLPKTSPDNMALKTMSKSSCSEEGNSSVP
7616 RKEDGMRGSLRTVTLCAPLEQDKVSEISSKRTEERKCFSSEANIQDPTSASASVQESV
7617 ITQRVSKSLQRLHTEKSHRFFTSTQNSEANALPSVLPVSGLLDLSSDTDSVVGDENNS
7618 ASAAVKHAVISMRKRSKGQAEKEAKAVSSHEPEITDGESPPAAKLAKFSFRPRTKLDD
7619 SSEKKNAEFPLFPSENTVKPGEQPQGEQLQKDCCPPEKRKMTLTCLGRKGLEKQSIGS
7620 KGNEEQLSQALGKEMGGNAQIHSDVTLDVVSPPHTEKRREGEEKLGGPSTVRVCSSTL
7621 ENLSKFCFASRPDSKSEAPPTIKTDTNNKESHSPLLKVHVSNPNKRKSFALGNASKDS
7622 VVTRKSLFSIAELDDATLDFDWD"
7623 ORIGIN
7624 1 atggcgctgc gcgccgacca ggtgagcctc atcgggcagg tgttcgagtc ctacctgctg
7625 61 cagcaccacc gggacgacat cctcggcatc ctgcgccagg gggacgacga ggcgcactat
7626 121 ccggtcctcg tcgacgccct gacgctgttc gagaccaaca tggagatcgg ggagtacttc
7627 181 aacgccttcc ccagccaggt gctgcccatc tttgacggtg cgctacgccg ggcggccatg
7628 241 gcggtgctgc aggccgccac gccatcccca gagctccgca tgaagccaaa cctccatgcc
7629 301 aggatttcag gtttgcccat ttgcccagag ctgactcgag agcacattcc taagaccagg
7630 361 gatgtgggtc acttcttgtc tgtcactggg actgtcatcc gtaccagtct ggtgaaagtg
7631 421 ctggaatttg agcggagcta catctgcaat aagtgcaaac acgtatttgt ggctaaggct
7632 481 gactttgagc agtactatgc tttctgccgt ccatcagcct gcctgaatga agagggctgc
7633 541 aactcaacca agttcacttg cctctctgga acatcctcct cccctaccag ctgcagagac
7634 601 tatcaggaaa tcaaaattca ggagcaggtt caaagactgt ctgtcggaag catccctcgt
7635 661 tgcatggtgg ttgttctgga agatgactta gtggacagtt gcaaatctgg agatgacatc
7636 721 acagtgtatg gagtggtaat gcagagatgg aaacctttcc atcaggatgc acgctgtgac
7637 781 ttggagcttg ttttgaaagc caactacgtt aaagtaaata acgagcagct agcaggtgtt
7638 841 acaattgatg aagaggtccg caaggaattt gaagacttct gggaaaagca tagaaataat
7639 901 cccttagcag ggaggaatga aattttggct agtttatgcc ctcaagtgtt tggattgtac
7640 961 ctggtgaagt tggctgtagc catggtgctt gctggtggtg tgcagaggat tgatgctact
7641 1021 ggaactcgaa tcagaggtga atcgcatctt ctgttagttg gagacccagg aacggggaaa
7642 1081 tctcagtttc tcaagtatgc agtaaagatt acaccgcggt ctgtgcttac tgcaggaatt
7643 1141 ggatctacaa gtgcaggttt gacagtgact gctgtgaagg actttgggga gtggaacttg
7644 1201 gaagctggag cactggtgct tgcagatgga ggcctttgtt gcattgatga gttcaatagc
7645 1261 atcaaagaac atgacagaac cagtatccat gaagcaatgg agcaacaaac catcagtgta
7646 1321 gcaaaagcag gcttggtatg taagcttaat acaaggacaa ccatactggc agcaacaaac
7647 1381 cccaaaggcc attatgaccc tgctgagtct gtctctgtca acatagctct tggcagtccc
7648 1441 ctgctgagca gatttgacct ggtcttagtg ttattagata caaagaatga ggagtgggac
7649 1501 cgtatcattt catctttcat cttgcaaaat aaaggttgcc ctagcaaatc agaaaagctg
7650 1561 tggagcatgg aaaagatgaa aacctacttc tgccttataa aaaggataca gccaaaattg
7651 1621 tctgatgaga gcaacctgat cctcgtacgc tattatcaaa tgcagcgtca gagtgactgc
7652 1681 aggaatgctg cccgaactac cattcgcttg ttggagagtt tgatacgcct tgcagaagct
7653 1741 catgcccgct tgatgtttag ggataccgtg actttggaag atgctgtaac tgtggtatcg
7654 1801 gtgatggaat cttctatgca gggaggtgca cttcttggag ccatcaatgc cttacacacc
7655 1861 tctttcccag aaaacccaat gacacagtac cgaatgcagt gtgaactcat actggagcga
7656 1921 ctggagctgc atgatcttct gcacaaagag ctacaaagac ttgacagatt acaaaaggaa
7657 1981 acttactgcc aattacagcc tgaagagaca agtttcagta ctactacagg atgcttgaac
7658 2041 aaaaatacat ttgagtcaaa gcaacagtct cagtcagaac cttcagatca acaaaagatt
7659 2101 aactcctatc cacagccttc tttgcccaaa agcaattgtg aaggggataa acacccagaa
7660 2161 gccttacgca acccaacgcc tggtaataac ataagtacaa aacgcttgag tagacttaac
7661 2221 aagagaagtg atgatggcag cctgggatgg tttgacagac tggaagacag aaacactgat
7662 2281 gctgaagaaa ctttttggaa gacatctcca ttgcccaaga catctccaga taatatggct
7663 2341 ttaaaaacca tgtctaagtc ctcctgttca gaggaaggaa attcttcagt cccgaggaag
7664 2401 gaagatggaa tgagagggtc actaagaact gttactctgt gtgctccttt ggagcaagac
7665 2461 aaagtttctg agataagcag caaaaggact gaggagcgca aatgtttttc ttcagaagca
7666 2521 aacattcaag acccaacatc agcaagtgcc agtgtgcagg agtcagttat tacacaacgg
7667 2581 gtttctaaaa gcctgcagag gctgcacaca gagaaatcac atagattctt tacaagtaca
7668 2641 cagaactctg aagcaaatgc tcttccctca gtattacctg tatcagggct gctggatctt
7669 2701 tcaagtgata cagactcagt agttggagat gaaaataata gtgcatctgc agcagtaaaa
7670 2761 catgcagtaa tttccatgag aaaacgaagt aaaggtcaag cagagaagga agcaaaggca
7671 2821 gtaagttccc atgagccaga aattactgac ggtgaaagtc ctccagcagc taaactagct
7672 2881 aaattttctt tcagaccaag gacaaaactt gatgattctt ctgagaagaa aaacgcagaa
7673 2941 tttccccttt ttccaagtga aaatactgtt aagccgggag agcagcccca gggagagcag
7674 3001 ctgcaaaaag attgctgccc acctgagaaa cgcaagatga cactgacttg cttaggaaga
7675 3061 aagggtttgg aaaagcaatc cattggtagt aaagggaatg aagagcaact gagtcaggcc
7676 3121 ttagggaaag agatgggagg aaatgcacag atacattctg atgtcaccct tgatgttgtg
7677 3181 tcacctccac acactgaaaa aagaagggag ggagaggaga aacttggtgg tccaagcaca
7678 3241 gtgagggtgt gctccagcac attagaaaac ctctccaagt tctgctttgc gtcacgtcct
7679 3301 gactcaaaat cagaagcgcc accaactatc aagactgaca ctaacaacaa ggaaagccac
7680 3361 agcccattgc tgaaggtgca tgtgagcaat cctaataaaa ggaagagttt tgcattggga
7681 3421 aatgcaagta aagacagtgt ggtcacccga aaatctctct tctcaatagc agagctggat
7682 3481 gatgctacat tagattttga ctgggattaa
7683 //
7684
7685 LOCUS NM_205501 1578 bp mRNA linear VRT 04-JAN-2017
7686 DEFINITION Gallus gallus argininosuccinate lyase 1 (ASL1), mRNA.
7687 ACCESSION NM_205501
7688 VERSION NM_205501.2
7689 KEYWORDS RefSeq.
7690 SOURCE Gallus gallus (chicken)
7691 ORGANISM Gallus gallus
7692 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7693 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7694 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7695 Phasianidae; Phasianinae; Gallus.
7696 REFERENCE 1 (bases 1 to 1578)
7697 AUTHORS Inoue M, Shiina T, Aizawa S, Sakata I, Takagi H and Sakai T.
7698 TITLE Detailed analysis of the delta-crystallin mRNA-expressing region in
7699 early development of the chick pituitary gland
7700 JOURNAL J. Mol. Histol. 43 (3), 273-280 (2012)
7701 PUBMED 22461196
7702 REMARK GeneRIF: Embryonic chick pituitary gland consists of two different
7703 regions where delta-crystallin and Lhx3 are expressed.
7704 REFERENCE 2 (bases 1 to 1578)
7705 AUTHORS Sampaleanu LM, Vallee F, Slingsby C and Howell PL.
7706 TITLE Structural studies of duck delta 1 and delta 2 crystallin suggest
7707 conformational changes occur during catalysis
7708 JOURNAL Biochemistry 40 (9), 2732-2742 (2001)
7709 PUBMED 11258884
7710 REFERENCE 3 (bases 1 to 1578)
7711 AUTHORS Nickerson,J.M., Wawrousek,E.F., Borras,T., Hawkins,J.W.,
7712 Norman,B.L., Filpula,D.R., Nagle,J.W., Ally,A.H. and Piatigorsky,J.
7713 TITLE Sequence of the chicken delta 2 crystallin gene and its intergenic
7714 spacer. Extreme homology with the delta 1 crystallin gene
7715 JOURNAL J. Biol. Chem. 261 (2), 552-557 (1986)
7716 PUBMED 3941090
7717 REFERENCE 4 (bases 1 to 1578)
7718 AUTHORS Nickerson,J.M., Wawrousek,E.F., Hawkins,J.W., Wakil,A.S.,
7719 Wistow,G.J., Thomas,G., Norman,B.L. and Piatigorsky,J.
7720 TITLE The complete sequence of the chicken delta 1 crystallin gene and
7721 its 5' flanking region
7722 JOURNAL J. Biol. Chem. 260 (16), 9100-9105 (1985)
7723 PUBMED 3839507
7724 REFERENCE 5 (bases 1 to 1578)
7725 AUTHORS Ohno,M., Sakamoto,H., Yasuda,K., Okada,T.S. and Shimura,Y.
7726 TITLE Nucleotide sequence of a chicken delta-crystallin gene
7727 JOURNAL Nucleic Acids Res. 13 (5), 1593-1606 (1985)
7728 PUBMED 2987831
7729 REFERENCE 6 (bases 1 to 1578)
7730 AUTHORS Borras,T., Nickerson,J.M., Chepelinsky,A.B. and Piatigorsky,J.
7731 TITLE Structural and functional evidence for differential promoter
7732 activity of the two linked delta-crystallin genes in the chicken
7733 JOURNAL EMBO J. 4 (2), 445-452 (1985)
7734 PUBMED 4018032
7735 REFERENCE 7 (bases 1 to 1578)
7736 AUTHORS Yasuda,K., Nakajima,N., Isobe,T., Okada,T.S. and Shimura,Y.
7737 TITLE The nucleotide sequence of a complete chicken delta-crystallin cDNA
7738 JOURNAL EMBO J. 3 (6), 1397-1402 (1984)
7739 PUBMED 6547670
7740 REFERENCE 8 (bases 1 to 1578)
7741 AUTHORS Nickerson,J.M. and Piatigorsky,J.
7742 TITLE Sequence of a complete chicken delta-crystallin cDNA
7743 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 81 (9), 2611-2615 (1984)
7744 PUBMED 6585817
7745 REFERENCE 9 (bases 1 to 1578)
7746 AUTHORS Nickerson,J.M. and Piatigorsky,J.
7747 TITLE The nucleic acid and deduced protein sequence of cDNA clones for
7748 delta-crystallin of the chicken lens
7749 JOURNAL FEBS Lett. 144 (2), 289-292 (1982)
7750 PUBMED 7117543
7751 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7752 preliminary review. The reference sequence was derived from
7753 AADN04000065.1.
7754 On Feb 21, 2015 this sequence version replaced gi:45382826.
7755
7756 Sequence Note: The RefSeq transcript and protein were derived from
7757 genomic sequence to make the sequence consistent with the reference
7758 genome assembly. The genomic coordinates used for the transcript
7759 record were based on alignments.
7760
7761 ##Evidence-Data-START##
7762 Transcript exon combination :: J00843.1, X00626.1 [ECO:0000332]
7763 RNAseq introns :: single sample supports all introns
7764 SAMEA3109051 [ECO:0000348]
7765 ##Evidence-Data-END##
7766 COMPLETENESS: complete on the 3' end.
7767 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7768 1-35 AADN04000065.1 3864098-3864132 c
7769 36-98 AADN04000065.1 3863924-3863986 c
7770 99-293 AADN04000065.1 3862590-3862784 c
7771 294-377 AADN04000065.1 3861590-3861673 c
7772 378-434 AADN04000065.1 3861182-3861238 c
7773 435-532 AADN04000065.1 3860819-3860916 c
7774 533-610 AADN04000065.1 3860391-3860468 c
7775 611-688 AADN04000065.1 3860003-3860080 c
7776 689-741 AADN04000065.1 3859806-3859858 c
7777 742-804 AADN04000065.1 3859427-3859489 c
7778 805-919 AADN04000065.1 3859094-3859208 c
7779 920-1004 AADN04000065.1 3858427-3858511 c
7780 1005-1064 AADN04000065.1 3858188-3858247 c
7781 1065-1148 AADN04000065.1 3857931-3858014 c
7782 1149-1229 AADN04000065.1 3857592-3857672 c
7783 1230-1336 AADN04000065.1 3857113-3857219 c
7784 1337-1578 AADN04000065.1 3856377-3856618 c
7785 FEATURES Location/Qualifiers
7786 source 1..1578
7787 /organism="Gallus gallus"
7788 /mol_type="mRNA"
7789 /db_xref="taxon:9031"
7790 /chromosome="19"
7791 /map="19"
7792 /breed="Red Jungle Fowl"
7793 gene 1..1578
7794 /gene="ASL1"
7795 /gene_synonym="ASL; CRYD1; D-CRY"
7796 /note="argininosuccinate lyase 1"
7797 /db_xref="CGNC:49838"
7798 /db_xref="GeneID:396498"
7799 misc_feature 21..23
7800 /gene="ASL1"
7801 /gene_synonym="ASL; CRYD1; D-CRY"
7802 /note="upstream in-frame stop codon"
7803 CDS 87..1487
7804 /gene="ASL1"
7805 /gene_synonym="ASL; CRYD1; D-CRY"
7806 /EC_number="4.3.2.1"
7807 /note="delta1-crystallin; delta-crystallin 1; delta
7808 crystallin I"
7809 /codon_start=1
7810 /product="delta-1 crystallin"
7811 /protein_id="NP_990832.2"
7812 /db_xref="CGNC:49838"
7813 /db_xref="GeneID:396498"
7814 /translation="MATEGDKLLGGRFVGSTDPIMEILSSSISTEQRLTEVDIQASMA
7815 YAKALEKASILTKTELEKILSGLEKISEESSKGVLVMTQSDEDIQTAIERRLKELIGD
7816 IAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTH
7817 LQKALPIRWSQFLLSHAVALTRDSERLGEVKKRITVLPLGSGALAGNPLEIDRELLRS
7818 ELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDA
7819 YSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLD
7820 VVDTLTAVLQVATGVISTLQVNKENMEKALTPELLSTDLALYLVRKGMPIRQAQTASG
7821 KAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAVGGTAKSSVTA
7822 QIEQLRELLKKQKEQA"
7823 ORIGIN
7824 1 acggagcgac cagccagggc tgagctgcgg agacggttgc accaggtgcc aggattgctg
7825 61 caaacacgag caaaacgtcg tccgaaatgg caaccgaggg ggataaactt ttgggaggaa
7826 121 gatttgttgg aagcacagat cccatcatgg agattctcag ctcttctata tccactgagc
7827 181 agagactgac tgaagttgat atccaggcaa gcatggctta tgccaaagcc ttggagaagg
7828 241 ctagcatcct gactaaaact gagctggaga agatcctgag tggcctggaa aagatctctg
7829 301 aggaatcatc taagggagtc cttgtaatga cccaaagtga tgaagatatc cagactgcca
7830 361 ttgaacgcag actgaaggag ctgattgggg atatagctgg aaagctgcag actggaagaa
7831 421 gcaggaatga acaggttgtg actgatctga aactgctcct gaagagttcc atctctgtca
7832 481 tctccactca cctgctgcag ctcatcaaga ccctggtgga gcgcgctgct atagaaattg
7833 541 atattatcat gcctggctac acccacctgc agaaagctct gcccatcaga tggagccagt
7834 601 tcctgctcag ccatgctgtt gcactgaccc gtgattctga gcgcctggga gaggtgaaga
7835 661 aaaggatcac tgtcttgcct ctgggaagtg gtgctctggc tggcaaccca ctggaaattg
7836 721 atagagagct tctgcgtagc gaactggaca tgacttccat caccctgaac agcatagacg
7837 781 ccatcagtga gagagacttt gtggtggaat taatctctgt tgccaccctg ctgatgatcc
7838 841 accttagcaa gctggctgaa gatctcatca tcttcagcac cactgaattt ggctttgtga
7839 901 ccctctctga tgcctacagc actggcagca gcctgttgcc tcagaagaag aaccctgata
7840 961 gcctggaact gatccgcagc aaagctggtc gtgtgtttgg acggttggct gctattctca
7841 1021 tggttctcaa aggaattcca agcaccttca gcaaggatct gcaggaggac aaggaagctg
7842 1081 tccttgatgt tgtggacact ctgactgctg tgctccaggt tgccactgga gtgatttcta
7843 1141 ccctccaggt caacaaggag aacatggaga aggctctgac ccctgagttg ctgtctactg
7844 1201 atctggctct ctacttggtt cgtaaaggaa tgccaatcag acaagcccaa actgcttctg
7845 1261 ggaaggccgt ccaccttgct gagactaaag gcatcaccat caataatctc accctggagg
7846 1321 acctgaagag catcagcccc ctgtttgcca gcgatgtctc ccaggtcttc agcgttgtca
7847 1381 acagtgtgga gcagtacact gccgtgggcg gtactgccaa gagcagcgtg actgcccaga
7848 1441 tcgagcagct gagggagctg ctgaagaagc agaaggagca ggcttagagt gtggggacat
7849 1501 atcccgtggc tgcagcgttg tgcttatcac actaatccag agttaataaa cactgtggtg
7850 1561 tattgtagtt cactgaaa
7851 //
7852
7853 LOCUS NM_001293169 3363 bp mRNA linear VRT 04-JAN-2017
7854 DEFINITION Gallus gallus minichromosome maintenance 8 homologous recombination
7855 repair factor (MCM8), mRNA.
7856 ACCESSION NM_001293169 XM_004935291
7857 VERSION NM_001293169.1
7858 KEYWORDS RefSeq.
7859 SOURCE Gallus gallus (chicken)
7860 ORGANISM Gallus gallus
7861 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
7862 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
7863 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
7864 Phasianidae; Phasianinae; Gallus.
7865 REFERENCE 1 (bases 1 to 3363)
7866 AUTHORS Nishimura K, Ishiai M, Horikawa K, Fukagawa T, Takata M, Takisawa H
7867 and Kanemaki MT.
7868 TITLE Mcm8 and Mcm9 form a complex that functions in homologous
7869 recombination repair induced by DNA interstrand crosslinks
7870 JOURNAL Mol. Cell 47 (4), 511-522 (2012)
7871 PUBMED 22771115
7872 REFERENCE 2 (bases 1 to 3363)
7873 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
7874 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
7875 P, Hayashizaki Y and Buerstedde JM.
7876 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
7877 gene function analysis
7878 JOURNAL Genome Biol. 6 (1), R6 (2005)
7879 PUBMED 15642098
7880 COMMENT VALIDATED REFSEQ: This record has undergone validation or
7881 preliminary review. The reference sequence was derived from
7882 AADN04000139.1 and AB689140.1.
7883 On Jun 3, 2014 this sequence version replaced gi:513174765.
7884
7885 Sequence Note: This RefSeq record was created from transcript and
7886 genomic sequence data to make the sequence consistent with the
7887 reference genome assembly. The genomic coordinates used for the
7888 transcript record were based on transcript alignments.
7889
7890 ##Evidence-Data-START##
7891 Transcript exon combination :: AB689140.1 [ECO:0000332]
7892 RNAseq introns :: single sample supports all introns
7893 SAMEA2201357, SAMEA2201361
7894 [ECO:0000348]
7895 ##Evidence-Data-END##
7896 COMPLETENESS: complete on the 3' end.
7897 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
7898 1-121 AADN04000139.1 15673630-15673750 c
7899 122-2614 AB689140.1 1-2493
7900 2615-3363 AADN04000139.1 15658574-15659322 c
7901 FEATURES Location/Qualifiers
7902 source 1..3363
7903 /organism="Gallus gallus"
7904 /mol_type="mRNA"
7905 /db_xref="taxon:9031"
7906 /chromosome="3"
7907 /map="3"
7908 /breed="Red Jungle Fowl"
7909 gene 1..3363
7910 /gene="MCM8"
7911 /note="minichromosome maintenance 8 homologous
7912 recombination repair factor"
7913 /db_xref="CGNC:6990"
7914 /db_xref="GeneID:421314"
7915 misc_feature 77..79
7916 /gene="MCM8"
7917 /note="upstream in-frame stop codon"
7918 CDS 122..2614
7919 /gene="MCM8"
7920 /EC_number="3.6.4.12"
7921 /note="MCM8 minichromosome maintenance deficient 8; DNA
7922 replication licensing factor MCM8; minichromosome
7923 maintenance complex component 8"
7924 /codon_start=1
7925 /product="DNA helicase MCM8"
7926 /protein_id="NP_001280098.1"
7927 /db_xref="CGNC:6990"
7928 /db_xref="GeneID:421314"
7929 /translation="MSRDLRGRGCPRGRGFQGWRGGWRGGWRGGWRGGWRGRTQKVEW
7930 KRAPEPASSRLVQSTLDQFIPYKGWKLYFSEAYADKSPFVQKTQAFEKFFMQRIELYD
7931 KDEIERKGSILVDYKELIEDRELTKSIPNISTELRDMPQKILQCMGLAIHQVLTKDLE
7932 RHAAELQVQEGLPLDGEPIINVPLIHARLYNYEPLTQLKNVRANCYGKYIALRGTVVR
7933 VSNIKPLCTKLAFVCGTCGDVQSVPLPDGKYTLPTKCLVPECRGRSFTPDRSSPLTAT
7934 VDWQSVKVQELMSDDQREAGRIPRTIECELVQDLVDSCVPGDVVTITGVVKVSSTEEG
7935 ASKNKNDKCVFLLYIEANSVSNSKGQKTKNFEEETFQRSFMEFSLKDLYAVQEIQAEE
7936 NLFRIIVNSLCPAIYGHEIVKAGLALALFGGCQKFVDDKNRIPVRGDPHVLIVGDPGL
7937 GKSQMLQAVCNVAPRGVYVCGNTSTSSGLTVTLSRDGASGDFALEAGALVLGDQGICG
7938 IDEFDKMGSQHQALLEAMEQQSISLAKAGIVCSLPARTSIVAAANPVGGHYNKAKTVS
7939 ENLKMGSALLSRFDLVFILLDTPNEDHDHLLSEHVMAIRAGKQAVCSSAVVSRTNVQD
7940 RSVLEVVSDRPLLERLKISPGENFDAIPHQLLRKYVGYARQYVHPHLSPEAAQVLQEF
7941 YLELRKQNQGASSTPITTRQLESLIRLTEARSRLELREKCTKEDAEDVIEIMKYSMLG
7942 TYSDEFGKLDFERSQHGSGMSNRSQAKRFVSALSSIAERTYSNLFDLQQLRQVAKELQ
7943 IRVFDFESFIESLNDQGYLLKKGSRLYQLQTM"
7944 ORIGIN
7945 1 gtttctcgcc tgcatcagag tgtgtgggca gcctcgcgcc ctacagagtc cccagcgatt
7946 61 tttgttaact ttgttctgat gcgttccgat ctcctctact ccgtctggcg ccgcggctga
7947 121 gatgagcagg gacctcaggg gcagggggtg cccccgggga cggggcttcc agggctggcg
7948 181 aggaggctgg cggggaggct ggcggggagg ctggcgagga ggctggcggg gaaggacgca
7949 241 aaaggtggag tggaagagag cgcctgagcc tgcaagttct cgactcgttc agtcaacact
7950 301 ggaccagttt attccgtata agggctggaa gctttatttc tctgaagctt atgctgacaa
7951 361 gtcacctttt gtccagaaga cacaagcctt tgaaaaattt tttatgcaac gcattgaact
7952 421 ttatgataag gatgaaatag aaagaaaggg aagcatcctt gtggattata aggaactgat
7953 481 agaagataga gaattaacca aatcaatacc aaatatatct acggagttac gggatatgcc
7954 541 tcagaaaata ctgcagtgca tgggtctggc aattcatcag gtgctaacca aggaccttga
7955 601 aaggcatgct gcagagctgc aggtgcagga agggttacca ctggatggag agcctataat
7956 661 aaatgttcct ctcattcatg ccagactgta caactatgag ccactaactc agctgaaaaa
7957 721 tgttcgggcc aactgttatg ggaaatacat tgccttgcgt ggcactgttg tacgtgtcag
7958 781 taacattaag cctctgtgca ctaagctagc ctttgtgtgt ggcacgtgtg gagatgttca
7959 841 gagtgttcct ctgcctgatg gaaagtacac tcttccaacg aagtgccttg ttcctgagtg
7960 901 ccgtggccgg tcattcacac ctgacaggag ctctccttta actgctacag tggattggca
7961 961 gtctgttaag gttcaggagc tcatgtcgga tgatcagcga gaagcaggcc gcatccctcg
7962 1021 cacgattgaa tgtgagctgg ttcaagatct tgtggacagt tgtgtcccag gagatgtggt
7963 1081 cacaattaca ggggtggtta aggtgtccag cactgaggaa ggagcatcta aaaataagaa
7964 1141 cgacaagtgt gtgttcttgt tgtacattga ggcaaattct gtcagcaaca gtaaaggaca
7965 1201 aaaaacaaag aattttgagg aggagacttt tcaacgatcc ttcatggaat tttcacttaa
7966 1261 ggacctctac gctgttcaag aaattcaagc tgaggaaaat ctcttcagga ttattgtgaa
7967 1321 ctctctttgt cctgcaatct acggccacga gattgtaaag gcaggcttgg ccctggcctt
7968 1381 gtttggcggg tgtcagaagt ttgtcgatga caagaacaga atcccagtgc gaggagatcc
7969 1441 acatgttctc attgttggag atccaggatt aggaaaaagt caaatgttgc aagcagtgtg
7970 1501 taacgttgct cctcgaggtg tgtatgtttg tggtaatact tccaccagct ctggcctgac
7971 1561 tgttacgctg tctagagatg gtgcttctgg agattttgcc ttggaagctg gtgctttagt
7972 1621 gcttggagat caaggtattt gtggaataga tgaatttgat aagatgggaa gccagcatca
7973 1681 ggctttgctg gaagccatgg aacaacaaag tatcagcctt gccaaggctg gtattgtttg
7974 1741 cagtttgcca gcccgaacat ctattgttgc tgcagcaaac ccagttggag ggcattataa
7975 1801 caaagccaaa acagtgtctg agaacttaaa aatggggagt gctttactgt caagatttga
7976 1861 cttagttttt attttgctgg acaccccaaa tgaagatcat gatcatttgc tgtcagagca
7977 1921 cgtgatggca atccgagctg ggaagcaggc agtgtgcagc agtgcagttg tgagccgtac
7978 1981 caacgtgcag gatcgctctg ttcttgaagt cgtttcagat cggcccctgc ttgaaagact
7979 2041 aaagatctca ccaggagaaa actttgatgc cattccacat cagctgctga ggaagtacgt
7980 2101 cggctatgct cggcagtacg ttcacccaca tttatctcca gaagctgctc aggtccttca
7981 2161 ggagttctat ctggagcttc ggaagcagaa ccagggagca agcagcacac caatcaccac
7982 2221 gaggcagctg gagtcgctga ttcgactcac ggaggcacga tcaaggctgg aattaaggga
7983 2281 gaaatgtacc aaggaagatg ctgaggatgt aatagaaata atgaaataca gcatgctggg
7984 2341 aacctactca gatgagtttg gaaaactgga ctttgaacgt tcacagcatg ggtctgggat
7985 2401 gagcaatcgg tcacaagcaa aaagatttgt ttctgccctt agtagtattg cagaaagaac
7986 2461 ttacagcaat ctctttgatt tgcaacaact tcgacaggtt gcaaaggagc tacaaatacg
7987 2521 agtatttgat tttgagagct ttattgaatc cctgaatgat cagggttatc tcttgaaaaa
7988 2581 aggctcgaga ctttatcagc ttcagactat gtgagaagag cttctgcagt aaacgttgag
7989 2641 acataattac tgtatcttga atggactgat gaacatggag cagtaaagca ccctgacttg
7990 2701 cagcctgccc caggagcacc tctggctctg ttgcttactg gaagttcctg ttcaaacatt
7991 2761 ggtaatgcca gcaggcttgc tagaagctca cgtaagacaa tctgtggtac tgctgcttga
7992 2821 ctcatcctgc aaggctgcca gcccaaacga tcctaacaac agatttcagt tctaaattgt
7993 2881 tggactcaca aattttaaac ctgaaatctt ttgtgagaag acagtgcaag ttgtgtcctt
7994 2941 agcactgcag ttcgtttgag gattttgaag tatagaaatg tttctaaaaa tttgggaact
7995 3001 ttcatgttga acctctgcag ctttatagct gtaagggttt tgttttttga tttgtaaccc
7996 3061 tttatttatt ggtcttccta acagatttta tttgaagtgc aagtctcact tatgaaagtc
7997 3121 tcctcgttac aatgcttaat gtgtaaaatg ggaattgtat ttttatttct cattaaatat
7998 3181 gatgggaata atagtaatag tgaacacttg catgggtgtt aataggtgtt atgtatgttc
7999 3241 acattacata ctgtgtatgt cttcttttaa ctgttctgcc acagaaggct gtctgatttt
8000 3301 atgaaacggg gcatgccctg atgcagtaac atagcagatg agaagctctg cataaggatt
8001 3361 ttt
8002 //
8003
8004 LOCUS NM_001030587 2656 bp mRNA linear VRT 04-JAN-2017
8005 DEFINITION Gallus gallus MON1 homolog A, secretory trafficking associated
8006 (MON1A), mRNA.
8007 ACCESSION NM_001030587 XM_003641966 XM_414273
8008 VERSION NM_001030587.2
8009 KEYWORDS RefSeq.
8010 SOURCE Gallus gallus (chicken)
8011 ORGANISM Gallus gallus
8012 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8013 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8014 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8015 Phasianidae; Phasianinae; Gallus.
8016 REFERENCE 1 (bases 1 to 2656)
8017 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
8018 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
8019 P, Hayashizaki Y and Buerstedde JM.
8020 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
8021 gene function analysis
8022 JOURNAL Genome Biol. 6 (1), R6 (2005)
8023 PUBMED 15642098
8024 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8025 preliminary review. The reference sequence was derived from
8026 AJ720812.1, AADN04000419.1 and BU243495.1.
8027 On or before May 31, 2014 this sequence version replaced
8028 gi:513204511, gi:71895458.
8029
8030 ##Evidence-Data-START##
8031 CDS exon combination :: AJ720812.1 [ECO:0000331]
8032 RNAseq introns :: mixed/partial sample support SAMEA2201357,
8033 SAMEA2201358 [ECO:0000350]
8034 ##Evidence-Data-END##
8035 COMPLETENESS: complete on the 3' end.
8036 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8037 1-2259 AJ720812.1 290-2548
8038 2260-2261 AADN04000419.1 612166-612167
8039 2262-2645 AJ720812.1 2549-2932
8040 2646-2656 BU243495.1 679-689
8041 FEATURES Location/Qualifiers
8042 source 1..2656
8043 /organism="Gallus gallus"
8044 /mol_type="mRNA"
8045 /db_xref="taxon:9031"
8046 /chromosome="12"
8047 /map="12"
8048 /breed="Leghorn"
8049 gene 1..2656
8050 /gene="MON1A"
8051 /note="MON1 homolog A, secretory trafficking associated"
8052 /db_xref="CGNC:2109"
8053 /db_xref="GeneID:415929"
8054 CDS 20..1669
8055 /gene="MON1A"
8056 /note="MON1 secretory trafficking family member A"
8057 /codon_start=1
8058 /product="vacuolar fusion protein MON1 homolog A"
8059 /protein_id="NP_001025758.1"
8060 /db_xref="CGNC:2109"
8061 /db_xref="GeneID:415929"
8062 /translation="MAADVHKKKGWEVPNGSLAPGDGQHAERSESPTPGLAQGTEPGA
8063 GQEGAMFVHTRSYEDLTSPEDGGAVVRSPEERRGEPAEPTSMEQISKDFSELSTQLTG
8064 MALDLEEEMRQSQEGKLEPSPQATRHDSVLSGKEEEDVTMDTWRMHRKHVFVLSEAGK
8065 PVYSRYGSEEALSSTMGVMMALVSFLEAEKNAIRSIHADGYKVVFVRRSPLVLVAVAR
8066 TRQSEQEIAHELLYIYYQILSLLTWTQLNHIFQQKQNYDLRRLLAGSERITDNLLDLM
8067 AHDPSFLMGAVRCLPLAASVRDAVSTSLQQAKAKSLVFSILLSGNQLVSLVRKKDQFL
8068 HPIDLHLLFNLISSSSSFREGEAWTPICLPKFNSSGFFHAHISYLEQEMDLCLLLVST
8069 DREDFFTVSDCKRRFQERLRRRGVHHALQEALRTPFYSVAQVGIPDLRHFIYKSKSSG
8070 LFTSPEIEAPYVREEEKERLLGLYQYLHSRAHNSSCPLKNIYFTGPRENLLAWVTSAF
8071 ELYICYSPLGTKAGAISAVNKLMKWIRKEEDRLFILTPQTY"
8072 ORIGIN
8073 1 gcatgtcccg ccccaaggaa tggctgcgga tgtccacaag aagaaaggct gggaagtgcc
8074 61 caacgggtcc ctggcgccgg gcgatgggca gcacgcggag cgctccgaga gccccacacc
8075 121 ggggctggca caggggacgg agccgggtgc gggccaggag ggagccatgt tcgtgcacac
8076 181 ccgctcctac gaggacctga cgagccctga ggacgggggg gctgtggtgc ggagccctga
8077 241 ggagaggcga ggggagccgg ctgagcccac gagcatggag cagatcagca aggacttcag
8078 301 cgagctgagc acacagctga cgggcatggc cctcgacctg gaggaggaga tgagacagag
8079 361 ccaggaggga aagctggagc cgtccccaca ggccacccgc catgactcgg tgctgtcagg
8080 421 aaaggaggag gaggatgtga ccatggacac ctggcgcatg catcggaagc acgtcttcgt
8081 481 gctgagtgag gctggcaagc ccgtgtattc ccgctatggg tccgaggaag ccctctccag
8082 541 caccatgggt gtcatgatgg ccctggtgtc cttcctagag gccgagaaaa acgccatccg
8083 601 gtccatccat gcagatggct acaaggtggt ctttgtgcgg aggagcccgc tggtgctggt
8084 661 ggcagtggcg cggacccggc agtctgagca ggagattgcc catgagctgc tctacatcta
8085 721 ttaccaaatc ctgagcctgc tcacctggac tcagctcaac cacatcttcc agcagaagca
8086 781 gaactacgac cttcgcaggc tccttgctgg ctccgagcgc atcactgaca acctgctgga
8087 841 ccttatggcc cacgacccca gcttcctcat gggtgccgtg cgctgcctgc ccttggctgc
8088 901 cagcgtgcgg gacgccgtga gcaccagcct ccagcaggcc aaggccaaga gcttggtctt
8089 961 ctccatcctc ctgtcaggga accagctggt ttctctggtg aggaagaagg atcagttcct
8090 1021 ccaccccatc gacctccatc tgctcttcaa cctcatcagc tcctcctctt cctttcggga
8091 1081 gggtgaagcc tggactccca tttgcctccc taagttcaac tccagcggct tcttccacgc
8092 1141 tcacatctcc tacctggagc aggagatgga cctgtgcctc ctgttggtct ccactgaccg
8093 1201 tgaggacttc ttcacagtct ccgactgcaa gcggcgcttc caggagcgcc tgcggcggcg
8094 1261 cggagtgcac cacgctctgc aggaggccct gcgcaccccc ttctacagcg tcgcccaggt
8095 1321 gggcatccct gacctgcggc acttcatcta caagtccaag agctctgggc tcttcaccag
8096 1381 ccctgagatc gaggcaccct acgtgcggga ggaggagaag gaaaggctct tggggctcta
8097 1441 tcagtacctc cacagccggg ctcacaactc gtcgtgcccc ctgaagaaca tctacttcac
8098 1501 gggcccacgt gaaaacctcc tggcttgggt caccagcgcc tttgagctct acatatgcta
8099 1561 cagtccactg gggaccaagg cgggcgccat cagtgctgtc aacaagctca tgaagtggat
8100 1621 ccgcaaggag gaagaccggc tcttcatcct cacaccccag acgtactgac ggacattgcc
8101 1681 cagggtgtgg tgccatccgg aggacctctg ctgtgctggg gagctcgtct ctctgggaag
8102 1741 cctgggctgt gagccagggg agagggcacg ggggaccctg agggcatggg gaaactgccc
8103 1801 gacctgggtg tgagagacga ggtgcaaagc tgcccaggct atgtggtgag cagggctttc
8104 1861 tctcacctgc aggcaatgcc tccctcatct ggggagctgc ccttcctctg cagcccgcct
8105 1921 ctctgtcctt tgtgctgctg tgcccacgga gggcaggtga caacacccag ctgggcacag
8106 1981 ggctggccgg gacactgcca gcactgctcc tctccccgct ttgggggagc tgggcctccc
8107 2041 aagtgccggg cagcccctga tggtcccaga gccaggctgg aggccggcag gtttgtcccc
8108 2101 ctggcaccta tgtgtgccca gtccctttct actgaggcca tgagaaggat gtccttgggg
8109 2161 atgctgggaa gcagggcagc cccagtgaga ctcggggtac cgggatgcca ctcggtgtgc
8110 2221 tcgtggtgct ggctccaaag cagcagctgt ggtgtgccct cccctacccc tccctcagag
8111 2281 ccccagctgg catggggcac tgatgtgtct tcatcgcatc gtggggtccc ctatcctcca
8112 2341 aaaagcagcc ccccgagctg ggcttgctgt gcgaggacca cctcctccct gctgtcccca
8113 2401 gctgtcccca ggcactggcg tggggctgag caccccgcag cacggcgctg ggcacggctc
8114 2461 ccgccccatg aagcacaacc tgaccctgtg catagggatg ggcgtccggg aggggaaacc
8115 2521 cccccgcggt cacaccgagg ggccggcagg aacccggcgg ggctaacgca gggactccgc
8116 2581 tcccttattt atgctcctgc cagattgtag tcgcttttct ttgctcataa acattatctg
8117 2641 gactcaaatc gaaaaa
8118 //
8119
8120 LOCUS NM_001293103 1151 bp mRNA linear VRT 04-JAN-2017
8121 DEFINITION Gallus gallus melatonin receptor 1B (MTNR1B), mRNA.
8122 ACCESSION NM_001293103 XM_417201
8123 VERSION NM_001293103.1
8124 KEYWORDS RefSeq.
8125 SOURCE Gallus gallus (chicken)
8126 ORGANISM Gallus gallus
8127 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8128 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8129 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8130 Phasianidae; Phasianinae; Gallus.
8131 REFERENCE 1 (bases 1 to 1151)
8132 AUTHORS Li J, Wang Z, Cao J, Dong Y and Chen Y.
8133 TITLE Melatonin receptor subtypes Mel1a and Mel1c but not Mel1b are
8134 associated with monochromatic light-induced B-lymphocyte
8135 proliferation in broilers
8136 JOURNAL Domest. Anim. Endocrinol. 45 (4), 206-215 (2013)
8137 PUBMED 24209505
8138 REMARK GeneRIF: results suggest that melatonin mediates green
8139 light-induced bursal B-lymphocyte proliferation through melatonin
8140 receptor subrypes Mel1c and Mel1a receptors but not Mel1b receptors
8141 by activating the cyclic AMP/protein kinase A pathway
8142 REFERENCE 2 (bases 1 to 1151)
8143 AUTHORS Sundaresan NR, Marcus Leo MD, Subramani J, Anish D, Sudhagar M,
8144 Ahmed KA, Saxena M, Tyagi JS, Sastry KV and Saxena VK.
8145 TITLE Expression analysis of melatonin receptor subtypes in the ovary of
8146 domestic chicken
8147 JOURNAL Vet. Res. Commun. 33 (1), 49-56 (2009)
8148 PUBMED 18604592
8149 REFERENCE 3 (bases 1 to 1151)
8150 AUTHORS Liu F, Yuan H, Sugamori KS, Hamadanizadeh A, Lee FJ, Pang SF, Brown
8151 GM, Pristupa ZB and Niznik HB.
8152 TITLE Molecular and functional characterization of a partial cDNA
8153 encoding a novel chicken brain melatonin receptor
8154 JOURNAL FEBS Lett. 374 (2), 273-278 (1995)
8155 PUBMED 7589552
8156 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8157 preliminary review. The reference sequence was derived from
8158 AADN04000207.1 and U30609.1.
8159 On May 30, 2014 this sequence version replaced gi:513166281.
8160
8161 Sequence Note: This RefSeq record was created from transcript and
8162 genomic sequence data to make the sequence consistent with the
8163 reference genome assembly. The genomic coordinates and exon
8164 combination used for the transcript record were based on alignment
8165 to mRNA DQ178665.1 from zebra finch (Taeniopygia guttata, taxonomy
8166 ID 59729).
8167
8168 ##Evidence-Data-START##
8169 RNAseq introns :: single sample supports all introns SAMEA2201363,
8170 SAMEA2201364 [ECO:0000348]
8171 ##Evidence-Data-END##
8172
8173 ##RefSeq-Attributes-START##
8174 inferred exon combination :: based on alignments, homology
8175 ##RefSeq-Attributes-END##
8176 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8177 1-217 AADN04000207.1 941976-942192
8178 218-1151 U30609.1 2-935
8179 FEATURES Location/Qualifiers
8180 source 1..1151
8181 /organism="Gallus gallus"
8182 /mol_type="mRNA"
8183 /db_xref="taxon:9031"
8184 /chromosome="1"
8185 /map="1"
8186 /breed="Red Jungle Fowl"
8187 gene 1..1151
8188 /gene="MTNR1B"
8189 /gene_synonym="Mel-1B-R; Mel1b"
8190 /note="melatonin receptor 1B"
8191 /db_xref="CGNC:12946"
8192 /db_xref="GeneID:396338"
8193 CDS 1..1086
8194 /gene="MTNR1B"
8195 /gene_synonym="Mel-1B-R; Mel1b"
8196 /note="Mel-1b melatonin receptor; mel1b receptor;
8197 melatonin receptor type 1b variant 1; melatonin receptor
8198 type 1b variant 2"
8199 /codon_start=1
8200 /product="melatonin receptor type 1B"
8201 /protein_id="NP_001280032.1"
8202 /db_xref="CGNC:12946"
8203 /db_xref="GeneID:396338"
8204 /translation="MLENGSLRNCCEPGGRGHFGSAEREAAAGGAPRPAWVVTALSSV
8205 LIFTTVVDILGNLLVIVSVFKNRKLRNSGNAFVVSLALADLVVALYPYPLVLLAIFHN
8206 GWTLGEMHCKVSGFVMGLSVIGSIFNITAIAINRYCYICHSFAYDKVYSCWNTMLYVS
8207 LIWVLTVIATVPNFFVGSLKYDPRIYSCTFVQTASSYYTIAVVVIHFIVPITVVSFCY
8208 LRIWVLVLQVRRRVKSETKPRLKPSDFRNFLTMFVVFVIFAFCWAPLNFIGLAVAINP
8209 SEMAPKVPEWLFIISYFMAYFNSCLNAIIYGLLNQNFRNEYKRILMSLWMPRLFFQDT
8210 SKGGTDGQKSKPSPALNNNDQMKTDTL"
8211 ORIGIN
8212 1 atgctggaga atggatctct gaggaactgc tgcgagccgg gcgggagggg tcacttcggc
8213 61 tcggcggagc gggaggcggc ggctggaggc gccccgcggc ccgcctgggt ggtgacggct
8214 121 ctctccagcg tgctgatctt caccaccgtg gtggacattt tgggcaacct gctggtcatc
8215 181 gtgtccgtct tcaagaaccg caagctcagg aactcaggta atgcatttgt ggtgagcctg
8216 241 gctttggctg atctggtggt ggccttgtat ccatacccac tggtgctctt agctattttc
8217 301 cacaatggat ggactttggg tgaaatgcac tgtaaagtga gtggctttgt gatgggacta
8218 361 agtgtaatag gctctatttt caacatcact gcaattgcaa taaaccgata ttgctatata
8219 421 tgtcatagct ttgcctatga caaagtgtat agctgttgga acacaatgct ctatgtgtcc
8220 481 ttaatctggg tattaacagt aattgcaact gtgccaaatt tttttgtcgg ctctctgaag
8221 541 tatgatccac gcatctattc atgcacattt gttcagactg caagctccta ctatacaatt
8222 601 gcagttgtgg taattcattt catcgtccct attactgttg tgagcttctg ctatcttcga
8223 661 atttgggtct tagtgcttca agttagaaga cgagtcaagt cagaaacaaa gccaagactg
8224 721 aaaccaagtg acttcagaaa ctttcttacc atgtttgtgg tttttgtgat ttttgccttt
8225 781 tgctgggcac ctctaaactt cataggactg gctgtagcca tcaatccttc agaaatggca
8226 841 ccaaaagttc ctgaatggtt attcattata agctacttca tggcctattt caacagctgc
8227 901 cttaatgcaa taatatatgg acttcttaac cagaattttc ggaatgaata caaacgtatt
8228 961 ttaatgtcac tgtggatgcc aaggcttttc ttccaggaca catccaaagg aggaactgat
8229 1021 ggacagaaga gcaagccttc tcctgcttta aacaacaatg accaaatgaa aactgacacc
8230 1081 ttgtaaaggg gtgatggtta atcgagaagt ttgtcatgga gagcttcatt gatagagttc
8231 1141 gaatgttcta g
8232 //
8233
8234 LOCUS NM_001290554 3006 bp mRNA linear VRT 04-JAN-2017
8235 DEFINITION Gallus gallus solute carrier family 4 member 1 (Diego blood group)
8236 (SLC4A1), mRNA.
8237 ACCESSION NM_001290554
8238 VERSION NM_001290554.1
8239 KEYWORDS RefSeq.
8240 SOURCE Gallus gallus (chicken)
8241 ORGANISM Gallus gallus
8242 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8243 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8244 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8245 Phasianidae; Phasianinae; Gallus.
8246 REFERENCE 1 (bases 1 to 3006)
8247 AUTHORS Weber RE, Voelter W, Fago A, Echner H, Campanella E and Low PS.
8248 TITLE Modulation of red cell glycolysis: interactions between vertebrate
8249 hemoglobins and cytoplasmic domains of band 3 red cell membrane
8250 proteins
8251 JOURNAL Am. J. Physiol. Regul. Integr. Comp. Physiol. 287 (2), R454-R464
8252 (2004)
8253 PUBMED 15087282
8254 REMARK GeneRIF: The cdB3 interaction is strongly dependent on pH and the
8255 number of negative and positive charges of the peptide and at the
8256 effector binding site, respectively.
8257 REFERENCE 2 (bases 1 to 3006)
8258 AUTHORS Gabrielli MG, Cox JV, Materazzi G and Menghi G.
8259 TITLE Cell type-specific and developmentally regulated expression of the
8260 AE1 anion exchanger in the chicken chorioallantoic membrane
8261 JOURNAL Histochem. Cell Biol. 121 (3), 189-199 (2004)
8262 PUBMED 14963713
8263 REMARK GeneRIF: Basolateral AE1 plays role in bicarbonate reabsorption
8264 that is required in the embryo for maintaining acid-base balance
8265 during development.
8266 REFERENCE 3 (bases 1 to 3006)
8267 AUTHORS Cox KH, Adair-Kirk TL and Cox JV.
8268 TITLE Four variant chicken erythroid AE1 anion exchangers. Role of the
8269 alternative N-terminal sequences in intracellular targeting in
8270 transfected human erythroleukemia cells
8271 JOURNAL J. Biol. Chem. 270 (34), 19752-19760 (1995)
8272 PUBMED 7649985
8273 REFERENCE 4 (bases 1 to 3006)
8274 AUTHORS Cox KH and Cox JV.
8275 TITLE Variant chicken AE1 anion exchangers possess divergent
8276 NH(2)-terminal cytoplasmic domains
8277 JOURNAL Am. J. Physiol. 268 (3 PT 2), F503-F513 (1995)
8278 PUBMED 7900851
8279 REFERENCE 5 (bases 1 to 3006)
8280 AUTHORS Kim HR, Yew NS, Ansorge W, Voss H, Schwager C, Vennstrom B, Zenke M
8281 and Engel JD.
8282 TITLE Two different mRNAs are transcribed from a single genomic locus
8283 encoding the chicken erythrocyte anion transport proteins (band 3)
8284 JOURNAL Mol. Cell. Biol. 8 (10), 4416-4424 (1988)
8285 PUBMED 3185555
8286 REFERENCE 6 (bases 1 to 3006)
8287 AUTHORS Cox JV and Lazarides E.
8288 TITLE Alternative primary structures in the transmembrane domain of the
8289 chicken erythroid anion transporter
8290 JOURNAL Mol. Cell. Biol. 8 (3), 1327-1335 (1988)
8291 PUBMED 2835670
8292 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
8293 NCBI review. The reference sequence was derived from M23404.1.
8294
8295 ##Evidence-Data-START##
8296 Transcript exon combination :: M23404.1 [ECO:0000332]
8297 RNAseq introns :: mixed/partial sample support
8298 SAMEA2201357, SAMEA2201358
8299 [ECO:0000350]
8300 ##Evidence-Data-END##
8301 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8302 1-3006 M23404.1 1-3006
8303 FEATURES Location/Qualifiers
8304 source 1..3006
8305 /organism="Gallus gallus"
8306 /mol_type="mRNA"
8307 /db_xref="taxon:9031"
8308 gene 1..3006
8309 /gene="SLC4A1"
8310 /gene_synonym="AE1; EAT"
8311 /note="solute carrier family 4 member 1 (Diego blood
8312 group)"
8313 /db_xref="CGNC:49859"
8314 /db_xref="GeneID:396532"
8315 misc_feature 41..43
8316 /gene="SLC4A1"
8317 /gene_synonym="AE1; EAT"
8318 /note="upstream in-frame stop codon"
8319 CDS 77..2845
8320 /gene="SLC4A1"
8321 /gene_synonym="AE1; EAT"
8322 /note="erythroid anion exchanger 1; erythrocyte anion
8323 transport protein; solute carrier family 4, anion
8324 exchanger, member 1 (erythrocyte membrane protein band 3,
8325 Diego blood group)"
8326 /codon_start=1
8327 /product="band 3 anion transport protein"
8328 /protein_id="NP_001277483.1"
8329 /db_xref="CGNC:49859"
8330 /db_xref="GeneID:396532"
8331 /translation="MEGPGQDTEDALRRSLDPEGYEDTKGSRTSLGTMSNPLVSDVDL
8332 EAAGSRQPTAHRDTYEGYVELHELVLDSRKDPCWMEAGRWLHLEESMEPGGAWGSHLP
8333 LLTYHSLLELHRAFAKGVVLLDVAANSLAAVAHVLLDQLIYEGQLKPQHRDDVLRALL
8334 LRHKHPSEAESVWTLPAAQLQCSDGEQKDADERALLRDQRAVEMRELHGAGQSPSRAQ
8335 LGPQLHQQLPEDTEATLVLVACAAFLEQPLLALVRLGAPCPDAVLAVPLPVRFVLTVL
8336 GPDSPRLSYHEIRRAAATVMADRVFRRDAYLCGGRAELLGGLQGFLEASIVLPPQEVP
8337 SEQHLHALIPLQRHAVRRRYQHPDTVRSPGGPTAPKDTGDKGQAPQDDDPLLRTRRPF
8338 GGLVRDIRRRYPKYLSDIRDALNPQCLAAVIFIYFAALSPAITFGGLLGEKTRGMMGV
8339 SELLLSTSVQCLLFSLLSAQPLLVVGFSGPLLVFEEAFFRFCEDHGLEYIVGRVWIGF
8340 WLILLVLLVVACEGTVLVRYLSRYTQEIFSFLISLIFIYETFAKLVTIFEAHPLQQSY
8341 DTDVSTEPSVPKPNTALLSLVLMAGTFFLALFLRQFKNSVFLPGKVRRLIGDFGVPIS
8342 IFVMALADFFIKDTYTQKLKVPRGLEVTNGTARGWFIHPMGSATPFPIWMMFASPVPA
8343 LLVFILIFLETQITTLIVSKPERKLVKGSGFHLDLLLIVAMGGLAALFGMPWLSATTV
8344 RTITHANALTVVGKSAVPGERAHIVEVKEQRLSGLLVAVLIGVSILMEPILKYIPLAV
8345 LFGIFLYMGVTSLFGIQLFDRILLLLMPPKYHPKEPYVTRVKTWRITSSPLTQILVVA
8346 LLWGVKVSPASLRCPFVLVLTVPLRRLLLPRIFSEIELKCLDTDDAVVTFEEAEGQDV
8347 YNEVQMPS"
8348 misc_feature 1325..1396
8349 /gene="SLC4A1"
8350 /gene_synonym="AE1; EAT"
8351 /experiment="experimental evidence, no additional details
8352 recorded"
8353 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8354 transmembrane region"
8355 misc_feature 1421..1483
8356 /gene="SLC4A1"
8357 /gene_synonym="AE1; EAT"
8358 /experiment="experimental evidence, no additional details
8359 recorded"
8360 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8361 transmembrane region"
8362 misc_feature 1493..1543
8363 /gene="SLC4A1"
8364 /gene_synonym="AE1; EAT"
8365 /experiment="experimental evidence, no additional details
8366 recorded"
8367 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8368 transmembrane region"
8369 misc_feature 1571..1633
8370 /gene="SLC4A1"
8371 /gene_synonym="AE1; EAT"
8372 /experiment="experimental evidence, no additional details
8373 recorded"
8374 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8375 transmembrane region"
8376 misc_feature 1670..1738
8377 /gene="SLC4A1"
8378 /gene_synonym="AE1; EAT"
8379 /experiment="experimental evidence, no additional details
8380 recorded"
8381 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8382 transmembrane region"
8383 misc_feature 1820..1882
8384 /gene="SLC4A1"
8385 /gene_synonym="AE1; EAT"
8386 /experiment="experimental evidence, no additional details
8387 recorded"
8388 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8389 transmembrane region"
8390 misc_feature 1916..1978
8391 /gene="SLC4A1"
8392 /gene_synonym="AE1; EAT"
8393 /experiment="experimental evidence, no additional details
8394 recorded"
8395 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8396 transmembrane region"
8397 misc_feature 2099..2161
8398 /gene="SLC4A1"
8399 /gene_synonym="AE1; EAT"
8400 /experiment="experimental evidence, no additional details
8401 recorded"
8402 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8403 transmembrane region"
8404 misc_feature 2210..2266
8405 /gene="SLC4A1"
8406 /gene_synonym="AE1; EAT"
8407 /experiment="experimental evidence, no additional details
8408 recorded"
8409 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8410 transmembrane region"
8411 misc_feature 2267..2320
8412 /gene="SLC4A1"
8413 /gene_synonym="AE1; EAT"
8414 /experiment="experimental evidence, no additional details
8415 recorded"
8416 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8417 transmembrane region"
8418 misc_feature 2390..2452
8419 /gene="SLC4A1"
8420 /gene_synonym="AE1; EAT"
8421 /experiment="experimental evidence, no additional details
8422 recorded"
8423 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8424 transmembrane region"
8425 misc_feature 2453..2509
8426 /gene="SLC4A1"
8427 /gene_synonym="AE1; EAT"
8428 /experiment="experimental evidence, no additional details
8429 recorded"
8430 /note="propagated from UniProtKB/Swiss-Prot (P15575.1);
8431 transmembrane region"
8432 ORIGIN
8433 1 ggcggcggcg tccccagagc ggggcatggt gccgccaaga tgagcgccgg cacgcagcgg
8434 61 gggggtgagt ggagccatgg aggggcccgg ccaggacacc gaggacgcgc tacgcaggag
8435 121 cctggacccc gagggctacg aggacaccaa gggctccagg acatccctgg ggacgatgag
8436 181 caatccattg gtgagcgatg tggacctgga ggcggcgggg agccgacagc ccacggccca
8437 241 cagggacacc tatgagggct acgtggagct gcacgagttg gtgctggaca gcaggaagga
8438 301 tccgtgctgg atggaggccg ggcgctggct gcatctggag gagagcatgg agccgggggg
8439 361 ggcgtggggc agccacctcc ccctgctcac ctaccacagc ctgctggagc tgcaccgcgc
8440 421 cttcgccaaa ggcgttgtgc tgctcgacgt ggcggccaac tcgctggcag ccgtggccca
8441 481 cgtgctgctg gatcagctca tctacgaggg gcagctgaag ccgcagcacc gcgacgacgt
8442 541 cctgcgggcg ctgctgctgc ggcacaagca ccccagtgag gccgagtcgg tgtggacgct
8443 601 gccggcggcg cagctgcagt gctcggacgg ggagcagaag gacgcggacg agcgcgcact
8444 661 gctgcgggac cagcgggctg tggagatgag ggagctgcat ggggccggcc agagcccctc
8445 721 cagggcgcag ctcggcccac agctccacca gcagctcccc gaggacaccg aggccacgct
8446 781 ggtgctcgtg gcctgcgcag cgttcctgga gcagccgctg ttggcgttgg tgcggctcgg
8447 841 cgcgccgtgt ccggacgcgg tgctggccgt gccgctgccc gtgcgcttcg tgctgacggt
8448 901 gttgggcccc gacagccccc gcctcagcta ccacgagatc cgccgcgccg ccgccaccgt
8449 961 catggccgac cgggtgttcc gccgggacgc ctacctgtgc gggggccgtg cggagctgct
8450 1021 gggggggctg cagggcttcc tggaggccag catcgttctg ccgccccaag aggtgcccag
8451 1081 cgagcagcac ctgcatgccc tgatcccact gcagcgccac gctgtccgcc gccgctacca
8452 1141 gcaccccgac accgtgcgca gccccggcgg ccccacggcc cccaaagaca caggggataa
8453 1201 gggccaggct ccgcaggacg acgaccccct gctccggacg aggcggccgt ttggggggtt
8454 1261 ggtgagggac atccgccgcc gttaccccaa atacctcagt gacatcaggg atgcgctcaa
8455 1321 cccgcagtgc ctggcagccg tcatcttcat ctacttcgca gcgctgtcgc ccgccatcac
8456 1381 cttcgggggt ttgctgggtg agaagacccg cggtatgatg ggggtgtcgg agctgctgct
8457 1441 ctccaccagc gtgcagtgtt tgctcttcag tctgctgagc gcgcagcctc tgctcgtcgt
8458 1501 cggcttctcg gggccactgc tggtctttga ggaggctttc ttcaggttct gtgaggatca
8459 1561 tggcctggag tacatcgtgg gccgggtgtg gatcggcttc tggctcatcc tgctggtgct
8460 1621 gctggtggtg gcctgcgagg gcaccgtcct ggtgcgctac ctgtcccgat acacgcagga
8461 1681 gatcttctcc ttcctcatct ccctcatctt catctatgag accttcgcca aactcgtcac
8462 1741 gatcttcgag gcccacccgc tgcagcagag ctacgacacg gacgtcagca cggagccctc
8463 1801 cgtgcccaaa cccaacacgg cgctgctgtc cctcgtgctc atggccggca ccttcttcct
8464 1861 cgccctcttc ctccgtcagt tcaagaacag tgtgttcctg cccggcaagg tgcggcggct
8465 1921 gatcggggac ttcggggtgc ccatctccat cttcgtcatg gccctggctg acttcttcat
8466 1981 caaggacacc tacacgcaga agctgaaggt gcccagaggg ctggaggtga ccaacggcac
8467 2041 cgcccgcggt tggttcatcc accccatggg cagcgccacc cccttcccca tctggatgat
8468 2101 gttcgcctcg ccggtgcccg ccctcctggt cttcatcctc atcttcctcg agacgcagat
8469 2161 caccaccctc atcgtcagca aaccggagcg gaagctggtg aagggctcgg ggttccacct
8470 2221 ggacctgctg ctcatcgtgg ccatgggcgg cctggccgcg ctcttcggca tgccctggct
8471 2281 gagcgccacc acggtgcgca ccatcacgca cgccaacgcg ctcaccgtcg tgggtaagag
8472 2341 cgccgtgccg ggggagaggg cccacatcgt ggaggtgaag gagcagcggc tcagcgggct
8473 2401 gctggtggcc gtgctgatcg gcgtctccat cctgatggag cccatcctga agtacatccc
8474 2461 gctggcggtg ctcttcggca tcttcctcta catgggcgtc acgtcgctct tcggcatcca
8475 2521 gctcttcgac cgcattctgc tgctgctcat gccccccaag taccacccca aggagccgta
8476 2581 cgtcacccgg gtgaagacgt ggcggatcac atcttcaccc ctgacgcaga tcctcgtcgt
8477 2641 ggcgctgctg tggggggtga aggtcagccc ggcctccctg cgctgccctt tcgtcctcgt
8478 2701 cctcaccgtg ccgctgcggc gccttctgct gccccgcatc ttcagcgaga tcgagctcaa
8479 2761 atgcctggac acggacgacg cagtggtgac atttgaagag gcggagggcc aggacgtgta
8480 2821 caacgaggtg cagatgccca gctaaggtcc cgccgtgccc ccacccacgt gtagatccac
8481 2881 catcgccccc cagagccgcg tcctgcccag accgtcccgc tatgccgccc agcgtcccgg
8482 2941 ggtagggatg gaacagccca gcacaggggg tagggtttgt aacgcagaga atcgctgcaa
8483 3001 aaacac
8484 //
8485
8486 LOCUS NM_205054 1273 bp mRNA linear VRT 04-JAN-2017
8487 DEFINITION Gallus gallus pepsinogen 3, group I (pepsinogen A) (PGA3), mRNA.
8488 ACCESSION NM_205054
8489 VERSION NM_205054.2
8490 KEYWORDS RefSeq.
8491 SOURCE Gallus gallus (chicken)
8492 ORGANISM Gallus gallus
8493 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8494 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8495 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8496 Phasianidae; Phasianinae; Gallus.
8497 REFERENCE 1 (bases 1 to 1273)
8498 AUTHORS Watanuki K and Yasugi S.
8499 TITLE Analysis of transcription regulatory regions of embryonic chicken
8500 pepsinogen (ECPg) gene
8501 JOURNAL Dev. Dyn. 228 (1), 51-58 (2003)
8502 PUBMED 12950079
8503 REMARK GeneRIF: An analysis of the transcription regulatory regions of
8504 pepsinogen was made.
8505 REFERENCE 2 (bases 1 to 1273)
8506 AUTHORS Hayashi K, Agata K, Mochii M, Yasugi S, Eguchi G and Mizuno T.
8507 TITLE Molecular cloning and the nucleotide sequence of cDNA for embryonic
8508 chicken pepsinogen: phylogenetic relationship with prochymosin
8509 JOURNAL J. Biochem. 103 (2), 290-296 (1988)
8510 PUBMED 3131317
8511 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
8512 NCBI review. The reference sequence was derived from D00215.1.
8513 On May 15, 2013 this sequence version replaced gi:45384243.
8514
8515 ##Evidence-Data-START##
8516 Transcript exon combination :: D00215.1 [ECO:0000332]
8517 RNAseq introns :: mixed/partial sample support
8518 SAMEA2201364 [ECO:0000350]
8519 ##Evidence-Data-END##
8520 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8521 1-1273 D00215.1 1-1273
8522 FEATURES Location/Qualifiers
8523 source 1..1273
8524 /organism="Gallus gallus"
8525 /mol_type="mRNA"
8526 /db_xref="taxon:9031"
8527 /chromosome="26"
8528 /map="26"
8529 gene 1..1273
8530 /gene="PGA3"
8531 /note="pepsinogen 3, group I (pepsinogen A)"
8532 /db_xref="CGNC:49555"
8533 /db_xref="GeneID:395926"
8534 CDS 17..1168
8535 /gene="PGA3"
8536 /EC_number="3.4.23.1"
8537 /note="embryonic pepsinogen"
8538 /codon_start=1
8539 /product="embryonic pepsinogen precursor"
8540 /protein_id="NP_990385.1"
8541 /db_xref="CGNC:49555"
8542 /db_xref="GeneID:395926"
8543 /translation="MRSLALLCAVLALSDGITRLPLERGKKLREILREKGLLHHFLQH
8544 HRYDIGTKFPHAFPDVLTVVTEPLLNTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWV
8545 PSVSCTSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTGDMEGTVGCDTVTVASLMDTN
8546 QLFGLSTSEPGQFFVYVKFDGILGLGYPSLAADGITPVFDNMVNESLLEQNLFSVYLS
8547 REPMGSMVVFGGIDESYFTGSINWIPVSYQGYWQISMDSIIVNKQEIACSSGCQAIID
8548 TGTSLVAGPASDINDIQSAVGANQNTYGEYSVNCSHILAMPDVVFVIGGIQYPVPALA
8549 YTEQNGQGTCMSSFQNSSADLWILGDVFIRVYYSIFDRANNRVGLAKAI"
8550 sig_peptide 17..64
8551 /gene="PGA3"
8552 /experiment="experimental evidence, no additional details
8553 recorded"
8554 /note="{ECO:0000255}; propagated from UniProtKB/Swiss-Prot
8555 (P16476.1)"
8556 mat_peptide 65..1165
8557 /gene="PGA3"
8558 /product="Embryonic pepsinogen"
8559 /experiment="experimental evidence, no additional details
8560 recorded"
8561 /note="propagated from UniProtKB/Swiss-Prot (P16476.1)"
8562 regulatory 1259..1264
8563 /regulatory_class="polyA_signal_sequence"
8564 /gene="PGA3"
8565 ORIGIN
8566 1 ctgcatccct ggcacaatgc gatccctggc gctcctgtgc gcggtccttg ctctctccga
8567 61 tggcatcacc aggctgccct tggaaagggg gaagaagctg agagagatcc tcagggagaa
8568 121 gggcttgctg caccacttcc tccagcatca ccgctacgac atcggcacca aattcccaca
8569 181 tgcttttcct gatgtgctca ccgtggtcac cgaacccctg ctgaacaccc tggacatgga
8570 241 atactatggg accatctcca ttggcacccc accgcaggac ttcactgtgg tcttcgacac
8571 301 cggctcctcc aacctctggg ttccctctgt ctcctgcacc agcccagcct gccaaagcca
8572 361 tcagatgttt aacccatcgc agtcctccac ctacaaaagc acagggcaga acctgtccat
8573 421 tcactatggc actggtgaca tggagggcac cgtgggctgc gacaccgtca ctgttgcatc
8574 481 actgatggac accaaccagc tctttggctt gagtacctct gagcctggcc aattctttgt
8575 541 ctatgtcaaa tttgatggga tcttgggctt gggctaccca agtttagcag ctgatggaat
8576 601 cactccggtc tttgataaca tggtgaatga gagcttgctg gagcagaacc tcttctcagt
8577 661 ctatctatcc cgtgagccaa tggggagcat ggtcgtcttc gggggaatcg atgagtccta
8578 721 tttcactggc tccatcaact ggattcctgt ctcttaccaa ggatactggc agatctccat
8579 781 ggacagcatc attgtgaaca agcaggagat tgcgtgcagc agcggctgcc aggccatcat
8580 841 tgacactggc acatccctcg tggccgggcc ggcctcggac attaacgaca tccaaagcgc
8581 901 agtcggggcc aatcagaaca cgtatggaga gtacagtgtg aactgcagcc acatccttgc
8582 961 catgcctgac gttgtctttg tcatcggtgg cattcagtat cccgtgcctg ccttggctta
8583 1021 caccgagcag aatggccaag gaacctgcat gagcagcttc cagaacagct ctgcagacct
8584 1081 ctggatcttg ggagacgtct tcatcagagt gtactacagc atcttcgacc gggccaacaa
8585 1141 ccgtgttgga ctggccaagg ctatttagat ctactgagat gacagcactc aaccaggcca
8586 1201 tggctgtgtt tttcagagca gcaagaggcc tcttgtaagg tgtccttgcc tgcatgcaaa
8587 1261 taaaatgttg atg
8588 //
8589
8590 LOCUS NM_001277841 1731 bp mRNA linear VRT 04-JAN-2017
8591 DEFINITION Gallus gallus SEC13 homolog, nuclear pore and COPII coat complex
8592 component (SEC13), mRNA.
8593 ACCESSION NM_001277841 XM_414450
8594 VERSION NM_001277841.1
8595 KEYWORDS RefSeq.
8596 SOURCE Gallus gallus (chicken)
8597 ORGANISM Gallus gallus
8598 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8599 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8600 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8601 Phasianidae; Phasianinae; Gallus.
8602 REFERENCE 1 (bases 1 to 1731)
8603 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
8604 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
8605 TITLE A comprehensive collection of chicken cDNAs
8606 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
8607 PUBMED 12445392
8608 REFERENCE 2 (bases 1 to 1731)
8609 AUTHORS Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
8610 Korn B and Buerstedde JM.
8611 TITLE A large database of chicken bursal ESTs as a resource for the
8612 analysis of vertebrate gene function
8613 JOURNAL Genome Res. 10 (12), 2062-2069 (2000)
8614 PUBMED 11116100
8615 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8616 preliminary review. The reference sequence was derived from
8617 BX934554.2, AJ396688.1, BU334051.1 and BG269901.1.
8618 On Apr 24, 2013 this sequence version replaced gi:363738752.
8619
8620 ##Evidence-Data-START##
8621 Transcript exon combination :: BX934554.2 [ECO:0000332]
8622 RNAseq introns :: mixed/partial sample support
8623 SAMEA2201357, SAMEA2201358
8624 [ECO:0000350]
8625 ##Evidence-Data-END##
8626 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8627 1-397 BX934554.2 1-397
8628 398-700 AJ396688.1 210-512
8629 701-1438 BU334051.1 9-746
8630 1439-1731 BG269901.1 12-304 c
8631 FEATURES Location/Qualifiers
8632 source 1..1731
8633 /organism="Gallus gallus"
8634 /mol_type="mRNA"
8635 /db_xref="taxon:9031"
8636 /chromosome="12"
8637 /map="12"
8638 /breed="Leghorn"
8639 gene 1..1731
8640 /gene="SEC13"
8641 /gene_synonym="SEC13L1"
8642 /note="SEC13 homolog, nuclear pore and COPII coat complex
8643 component"
8644 /db_xref="CGNC:6381"
8645 /db_xref="GeneID:416119"
8646 CDS 51..1013
8647 /gene="SEC13"
8648 /gene_synonym="SEC13L1"
8649 /note="SEC13-like 1"
8650 /codon_start=1
8651 /product="protein SEC13 homolog"
8652 /protein_id="NP_001264770.1"
8653 /db_xref="CGNC:6381"
8654 /db_xref="GeneID:416119"
8655 /translation="MVSVINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN
8656 GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGTWEKTYEYTGH
8657 DSSVNSVCWAPHDYGLILACGSSDGAISLLSYTGDGQWEVKKISNAHTIGCNAVSWAP
8658 AVVPGSLIEQPSGQKPNYIKRFASGGCDNLVKIWKEEDGQWKEEQKLEAHSDWVRDVA
8659 WAPSIGLPTSTIASCSQDGRVFIWTCDDASGSSWSPKLLHKFNDVVWHVSWSITANIL
8660 AVSGGDNKVTLWKESVDGLWACISDVNKGQGGVSAVPEGQQNEQ"
8661 ORIGIN
8662 1 cgcccgccga ccgatcgccg cccgccgttc cacggcccgc agccgccgcc atggtttccg
8663 61 tcattaacac cgtggacacc tctcacgagg acatgataca cgatgcgcag atggattact
8664 121 atggcactcg gctagcgacc tgttcttcag acagatctgt gaaaatcttt gatgttcgga
8665 181 atggagggca gatcctcatt gcggacctaa gagggcatga aggtccagtg tggcaagttg
8666 241 cctgggctca tcctatgtac ggaaacatct tggcttcctg ctcctatgac aggaaggtta
8667 301 ttatctggaa ggaagaaaat ggcacttggg aaaagaccta tgagtacaca gggcatgatt
8668 361 cctcagtgaa ttctgtctgc tgggcaccac acgactacgg actgatactg gcctgcggga
8669 421 gctctgatgg tgcaatttca ttactgagct acactggtga cgggcagtgg gaagtcaaaa
8670 481 agatcagcaa tgcacatact attggatgta atgcagttag ctgggctcct gctgttgtac
8671 541 caggcagcct tatagagcaa ccatctggtc aaaaaccaaa ctacatcaaa agatttgcat
8672 601 ctggtggttg tgacaacctt gtcaagatct ggaaagaaga agatggtcag tggaaagaag
8673 661 agcagaagct ggaggcacac agtgactggg ttcgagatgt agcctgggct ccatccatag
8674 721 gcttgccaac aagtaccatt gctagctgtt cacaggatgg cagagtgttt atctggacat
8675 781 gcgatgatgc ctctggaagt tcatggtcac caaaattgct gcacaagttc aatgatgttg
8676 841 tctggcatgt gagttggtcc attactgcaa atatacttgc agtgtctgga ggagacaata
8677 901 aagtcacact gtggaaggaa tcggtagatg ggctgtgggc atgcatcagc gatgtcaaca
8678 961 agggccaagg aggagtgtct gccgttccag aagggcagca gaatgagcag tgatgcggga
8679 1021 ctgaccagcc cagctgctgg aagcgatcac tatacctgat ttgcaatgtt tcttgaatca
8680 1081 gatgagaact ggttttatcc aaactggacg tgaacatggg gaaataacta tccaatttta
8681 1141 tgagcactct taaccaatac ttggaggcta ctatgtgttg ataatcagcc ttaattgaca
8682 1201 ttcccttaaa ttaaagatga agagaggagc aaagtactgt gccttgtgct actccctgat
8683 1261 actgtaaaaa ttgtaacctg ccttctggtt taggagtcag atttaattgg atacacttca
8684 1321 agcatgcgag caggaacagg aggaggcagg caatgaaagt gctcatgtgt gaacccatct
8685 1381 gtgtaagggg caaatactct gccactcaaa ggccaaaact atttcaagtg acagggtggg
8686 1441 ctggtggagt tagcagtaga cagcattctg gtggtactga aatggtgctt gggtttccct
8687 1501 gaaagtaatg tgctcagata catgaaaatc tccatgcatt cccaaagatg aaaaagagta
8688 1561 gcagaacgca tatgtatttt gctttacagt aatctcaaac ttgtttattt aacaaacatc
8689 1621 aacaaatgaa aatacaattt gaagactttt ttttagccac aattctatac tgtacctcag
8690 1681 gtttttgttt agacaacaaa ataaagtctt attggttaaa gcctgaaaaa a
8691 //
8692
8693 LOCUS NM_001277715 1025 bp mRNA linear VRT 04-JAN-2017
8694 DEFINITION Gallus gallus IMP4 homolog, U3 small nucleolar ribonucleoprotein
8695 (IMP4), mRNA.
8696 ACCESSION NM_001277715 XM_003641728
8697 VERSION NM_001277715.1
8698 KEYWORDS RefSeq.
8699 SOURCE Gallus gallus (chicken)
8700 ORGANISM Gallus gallus
8701 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8702 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8703 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8704 Phasianidae; Phasianinae; Gallus.
8705 REFERENCE 1 (bases 1 to 1025)
8706 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
8707 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
8708 TITLE A comprehensive collection of chicken cDNAs
8709 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
8710 PUBMED 12445392
8711 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8712 preliminary review. The reference sequence was derived from
8713 BX929657.2 and BU218418.1.
8714 On Apr 14, 2013 this sequence version replaced gi:363736930.
8715
8716 ##Evidence-Data-START##
8717 Transcript exon combination :: BX929657.2, CR386362.1 [ECO:0000332]
8718 RNAseq introns :: mixed/partial sample support
8719 SAMEA2201357, SAMEA2201358
8720 [ECO:0000350]
8721 ##Evidence-Data-END##
8722 COMPLETENESS: complete on the 3' end.
8723 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8724 1-1016 BX929657.2 1-1016
8725 1017-1025 BU218418.1 264-272
8726 FEATURES Location/Qualifiers
8727 source 1..1025
8728 /organism="Gallus gallus"
8729 /mol_type="mRNA"
8730 /db_xref="taxon:9031"
8731 /chromosome="9"
8732 /map="9"
8733 /breed="Leghorn"
8734 gene 1..1025
8735 /gene="IMP4"
8736 /note="IMP4 homolog, U3 small nucleolar ribonucleoprotein"
8737 /db_xref="CGNC:65804"
8738 /db_xref="GeneID:100857200"
8739 misc_feature 31..33
8740 /gene="IMP4"
8741 /note="upstream in-frame stop codon"
8742 CDS 58..930
8743 /gene="IMP4"
8744 /note="U3 small nucleolar ribonucleoprotein protein
8745 IMP4-like; IMP4, U3 small nucleolar ribonucleoprotein,
8746 homolog"
8747 /codon_start=1
8748 /product="U3 small nucleolar ribonucleoprotein protein
8749 IMP4"
8750 /protein_id="NP_001264644.1"
8751 /db_xref="CGNC:65804"
8752 /db_xref="GeneID:100857200"
8753 /translation="MLRRQARERREYLQRRAQEERLRRQQDKKEQLRQALDENRLLPT
8754 ELRRQALALQKELEFETPGENGVTGSQDDEYRWAGLEPPKVMVTTSRDPSARLRVFAK
8755 ELCLVIPGARRLNRGRAEVGALVSACRAAGVTDLLVVHETRGQPDGLVLCHLPHGPTA
8756 HFTLSGAVLRHEVGGLGGAPLGAPHILLHRLDSALGRRVGTILKHLFPVPRPQTRRVV
8757 TFANEDDVILVRNHVYRRQGKTVELEEVGPRFQLRPYLIRLGTLEQGDAADVEWRWHP
8758 YTTTARKRQLLSLT"
8759 ORIGIN
8760 1 caacggcggc ggtgtttgga ggcgccggtg tgaggagaga gcggtgcggc tgcagctatg
8761 61 cttcgccgcc aggcccgtga gcgccgtgag tacctgcagc gccgggcgca ggaggagcgg
8762 121 ctgagacggc agcaggataa gaaggagcag ctgagacagg ccctggatga gaaccgactg
8763 181 ctgcccactg agctgaggcg ccaggcactg gccttgcaga aggagctgga gtttgagaca
8764 241 ccaggggaaa atggtgtgac aggcagccag gatgatgagt accggtgggc agggctggag
8765 301 ccccccaagg tgatggtgac aacctcgcgt gaccccagtg cccgcctccg tgtctttgcc
8766 361 aaggagctgt gcctggtgat cccaggggca cggcggctga accggggccg ggcagaggta
8767 421 ggggccctgg tgagtgcgtg ccgggcggct ggcgtcactg acctgctggt ggtgcatgag
8768 481 acccgtggac agcctgatgg actggtgctg tgccacctgc cccacggccc cacagcccac
8769 541 ttcacactga gcggggctgt gctgaggcac gaggtggggg gtcttggtgg agctccccta
8770 601 ggagcaccac acatcttgct gcaccgactg gacagcgcgc tgggacgtcg ggtagggacc
8771 661 atcctcaagc acctcttccc tgttccccgg ccccagaccc gccgcgtggt gacttttgcc
8772 721 aacgaagatg acgtcatcct tgtccggaac catgtttacc gtcgccaggg gaagacagtg
8773 781 gagctagagg aggtgggacc ccgcttccag ctacgcccct acctgatccg ccttgggacc
8774 841 ctggagcaag gggatgccgc tgatgtggaa tggcgttggc acccctacac caccactgcc
8775 901 cgcaagcgcc agctgctgag tctcacctga gtgttgtcac ctcctgttgc ctgaactact
8776 961 ggcattctgc tggctcagat gacattttca ataatatata tttttccact ttttccacac
8777 1021 caaaa
8778 //
8779
8780 LOCUS NM_001277631 1133 bp mRNA linear VRT 04-JAN-2017
8781 DEFINITION Gallus gallus RNA polymerase I subunit C (POLR1C), transcript
8782 variant 2, mRNA.
8783 ACCESSION NM_001277631
8784 VERSION NM_001277631.1
8785 KEYWORDS RefSeq.
8786 SOURCE Gallus gallus (chicken)
8787 ORGANISM Gallus gallus
8788 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8789 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8790 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8791 Phasianidae; Phasianinae; Gallus.
8792 REFERENCE 1 (bases 1 to 1133)
8793 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
8794 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
8795 TITLE A comprehensive collection of chicken cDNAs
8796 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
8797 PUBMED 12445392
8798 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8799 preliminary review. The reference sequence was derived from
8800 AADN04000139.1, BX929977.2, AJ444864.1 and BU338692.1.
8801
8802 Transcript Variant: This variant (2) lacks an alternate in-frame
8803 exon compared to variant 1. The resulting protein (isoform 2) is
8804 shorter compared to isoform 1.
8805
8806 Sequence Note: This RefSeq record was created from transcript and
8807 genomic sequence data from different strains because no single
8808 transcript from the same strain was available for the full length
8809 of the gene. The extent of this transcript is supported by
8810 transcript alignments and orthologous data.
8811
8812 ##Evidence-Data-START##
8813 Transcript exon combination :: BX929977.2, BU229232.1 [ECO:0000332]
8814 RNAseq introns :: single sample supports all introns
8815 SAMN03354475, SAMN03354491
8816 [ECO:0000348]
8817 ##Evidence-Data-END##
8818 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8819 1-16 AADN04000139.1 1602039-1602054
8820 17-353 BX929977.2 1-337
8821 354-394 AJ444864.1 41-81
8822 395-722 BX929977.2 379-706
8823 723-760 AJ444864.1 530-567
8824 761-917 BX929977.2 745-901
8825 918-1128 BU338692.1 396-606
8826 1129-1133 AADN04000139.1 1605359-1605363
8827 FEATURES Location/Qualifiers
8828 source 1..1133
8829 /organism="Gallus gallus"
8830 /mol_type="mRNA"
8831 /db_xref="taxon:9031"
8832 /chromosome="3"
8833 /map="3"
8834 /breed="Red Jungle Fowl"
8835 gene 1..1133
8836 /gene="POLR1C"
8837 /note="RNA polymerase I subunit C"
8838 /db_xref="CGNC:7876"
8839 /db_xref="GeneID:421452"
8840 CDS 13..933
8841 /gene="POLR1C"
8842 /note="isoform 2 is encoded by transcript variant 2;
8843 polymerase (RNA) I polypeptide C, 30kDa; polymerase (RNA)
8844 I subunit C"
8845 /codon_start=1
8846 /product="DNA-directed RNA polymerases I and III subunit
8847 RPAC1 isoform 2"
8848 /protein_id="NP_001264560.1"
8849 /db_xref="CGNC:7876"
8850 /db_xref="GeneID:421452"
8851 /translation="MAAKRSMDELRERVVLGEFGVRNVHTTDFPGNYPGYDDAWDQRR
8852 FEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQ
8853 DEILAHRLGLIPIRADPRLFEYRNQVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIA
8854 LLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFS
8855 PGVIEIQNIKGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGIL
8856 PPDVLVTEAIKILMGKCQRFLNELDSVPME"
8857 ORIGIN
8858 1 cttccggcgg cgatggcggc caagaggagc atggacgagt tgagggagcg cgtggtgctg
8859 61 ggcgagttcg gcgtccgcaa cgtccacacc accgacttcc ccggcaacta ccccggctac
8860 121 gacgacgcgt gggaccagcg gcgcttcgag gaggcgttcc gcgtggacgt ggtgcgggag
8861 181 gaggacggcg tgctggagtt cgacatggtg ggcatcgacg cggccatcgc caacgccttc
8862 241 cgccgcatcc tgctcgccga ggtgccaacg atggctgtgg agaaagtgtt tgtgtacaac
8863 301 aacacgtcca tcgtgcagga tgagatcctg gcgcaccgcc tgggccttat ccccatccgg
8864 361 gccgaccctc gactctttga gtacaggaat caagtgtaca gtaagcacat gacatgggtg
8865 421 cccttgggga atcagacaga cctctttccg gatgctgact tccgacctgt ccatgatgac
8866 481 atcctcatag cactgttgcg acctgggcag gaaatagatg tgctcatgca ctgtgtcaag
8867 541 ggcataggta aagatcatgc caagttctct cctgtggcca cagctagtta tcgactgctt
8868 601 cctgacatta ctctcctgca gcctgttgag gatgaggcag ccgagacgtt acagaagtgc
8869 661 ttttcccctg gagtcattga gatccagaac atcaagggaa aaaaggtggc aagagtagcc
8870 721 aacgcacggt tggacacatt cagcagggaa gtcttccgac atgagggtct gaaaaacctt
8871 781 gtgcgcctgg caagagtgcg aaatcattac atcttttcag tggagtcgac aggtatcttg
8872 841 cctccagatg tgctggtgac cgaagccatc aagatactga tgggaaagtg tcagcgtttc
8873 901 ctgaatgaac tggacagcgt gcctatggag tgagcacgct gtagccaaga agcagaaccc
8874 961 tgtgctgctg ttttgggctt cctgctccag cctgcaggag tggttcttct gccctaggca
8875 1021 tgagttttga gatggatttg ttaagagccc tgggaccatc tctttgaact ggttttgtgt
8876 1081 gtgatgagcc tcagtgagga gatgcaccaa aataaaagct ttcttttacc tcc
8877 //
8878
8879 LOCUS NM_001277630 1253 bp mRNA linear VRT 04-JAN-2017
8880 DEFINITION Gallus gallus RNA polymerase I subunit C (POLR1C), transcript
8881 variant 1, mRNA.
8882 ACCESSION NM_001277630 XM_001234461 XM_419502
8883 VERSION NM_001277630.1
8884 KEYWORDS RefSeq.
8885 SOURCE Gallus gallus (chicken)
8886 ORGANISM Gallus gallus
8887 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8888 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8889 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8890 Phasianidae; Phasianinae; Gallus.
8891 REFERENCE 1 (bases 1 to 1253)
8892 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
8893 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
8894 TITLE A comprehensive collection of chicken cDNAs
8895 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
8896 PUBMED 12445392
8897 COMMENT VALIDATED REFSEQ: This record has undergone validation or
8898 preliminary review. The reference sequence was derived from
8899 BX934152.2, BU224670.1 and AADN04000139.1.
8900 On or before Apr 13, 2013 this sequence version replaced
8901 gi:363731836, gi:363731837.
8902
8903 Transcript Variant: This variant (1) represents the longer
8904 transcript and encodes the longer protein (isoform 1).
8905
8906 Sequence Note: This RefSeq record was created from transcript and
8907 genomic sequence data from different strains because no single
8908 transcript from the same strain was available for the full length
8909 of the gene. The extent of this transcript is supported by
8910 transcript alignments and orthologous data.
8911
8912 ##Evidence-Data-START##
8913 Transcript exon combination :: BX934152.2 [ECO:0000332]
8914 RNAseq introns :: mixed/partial sample support
8915 SAMEA2201357, SAMEA2201358
8916 [ECO:0000350]
8917 ##Evidence-Data-END##
8918 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
8919 1-1037 BX934152.2 2-1038
8920 1038-1038 BU224670.1 543-543
8921 1039-1229 BX934152.2 1040-1230
8922 1230-1253 AADN04000139.1 1605340-1605363
8923 FEATURES Location/Qualifiers
8924 source 1..1253
8925 /organism="Gallus gallus"
8926 /mol_type="mRNA"
8927 /db_xref="taxon:9031"
8928 /chromosome="3"
8929 /map="3"
8930 gene 1..1253
8931 /gene="POLR1C"
8932 /note="RNA polymerase I subunit C"
8933 /db_xref="CGNC:7876"
8934 /db_xref="GeneID:421452"
8935 CDS 13..1053
8936 /gene="POLR1C"
8937 /note="isoform 1 is encoded by transcript variant 1;
8938 polymerase (RNA) I polypeptide C, 30kDa; polymerase (RNA)
8939 I subunit C"
8940 /codon_start=1
8941 /product="DNA-directed RNA polymerases I and III subunit
8942 RPAC1 isoform 1"
8943 /protein_id="NP_001264559.1"
8944 /db_xref="CGNC:7876"
8945 /db_xref="GeneID:421452"
8946 /translation="MAAKRSMDELRERVVLGEFGVRNVHTTDFPGNYPGYDDAWDQRR
8947 FEEAFRVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQ
8948 DEILAHRLGLIPIRADPRLFEYRNQGDEEGTEIDTLQFQLKIKCSRNPQAAKESSDPN
8949 ELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDDILIALLRPGQEIDVLMHCVKGI
8950 GKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFSPGVIEIQNIKGKKVARVA
8951 NARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILMGKCQ
8952 RFLNELDSVPME"
8953 ORIGIN
8954 1 cttccggcgg cgatggcggc caagaggagc atggacgagt tgagggagcg cgtggtgctg
8955 61 ggcgagttcg gcgtccgcaa cgtccacacc accgacttcc ccggcaacta ccccggctac
8956 121 gacgacgcgt gggaccagcg gcgcttcgag gaggcgttcc gcgtggacgt ggtgcgggag
8957 181 gaggacggcg tgctggagtt cgacatggtg ggcatcgacg cggccatcgc caacgccttc
8958 241 cgccgcatcc tgctcgccga ggtgccaacg atggctgtgg agaaagtgtt tgtgtacaac
8959 301 aacacgtcca tcgtgcagga tgagatcctg gcgcaccgcc tgggccttat ccccatccgg
8960 361 gccgaccctc gactctttga gtacaggaat caaggagatg aagaggggac agaaattgat
8961 421 actctgcagt ttcagctgaa aataaaatgc agccggaatc ctcaggcagc caaggaatca
8962 481 tctgacccaa atgaactgta tttcaatcac aaagtgtaca gtaagcacat gacatgggtg
8963 541 cccttgggga atcagacaga cctctttccg gatgctgact tccgacctgt ccatgatgac
8964 601 atcctcatag cactgttgcg acctgggcag gaaatagatg tgctcatgca ctgtgtcaag
8965 661 ggcataggta aagatcatgc caagttctct cctgtggcca cagctagtta tcgactgctt
8966 721 cctgacatta ctctcctgca gcctgttgag gatgaggcag ccgagacgtt acagaagtgc
8967 781 ttttcccctg gagtcattga gatccagaac atcaagggaa aaaaggtggc aagagtagcc
8968 841 aacgcacggt tggacacatt cagcagggaa gtcttccgac atgagggtct gaaaaacctt
8969 901 gtgcgcctgg caagagtgcg aaatcattac atcttttcag tggagtcgac aggtatcttg
8970 961 cctccagatg tgctggtgac cgaagccatc aagatactga tgggaaagtg tcagcgtttc
8971 1021 ctgaatgaac tggacagcgt gcctatggag tgagcacgct gtagccaaga agcagaaccc
8972 1081 tgtgctgctg ttttgggctt cctgctccag cctgcaggag tggttcttct gccctaggca
8973 1141 tgagttttga gatggatttg ttaagagccc tgggaccatc tctttgaact ggttttgtgt
8974 1201 gtgatgagcc tcagtgagga gatgcaccaa aataaaagct ttcttttacc tcc
8975 //
8976
8977 LOCUS NM_001271966 1033 bp mRNA linear VRT 04-JAN-2017
8978 DEFINITION Gallus gallus calcitonin related polypeptide alpha (CALCA),
8979 transcript variant 4, mRNA.
8980 ACCESSION NM_001271966
8981 VERSION NM_001271966.1
8982 KEYWORDS RefSeq.
8983 SOURCE Gallus gallus (chicken)
8984 ORGANISM Gallus gallus
8985 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
8986 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
8987 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
8988 Phasianidae; Phasianinae; Gallus.
8989 REFERENCE 1 (bases 1 to 1033)
8990 AUTHORS Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
8991 TITLE Calcitonin directly increases adrenocorticotropic
8992 hormone-stimulated corticosterone production in the hen adrenal
8993 gland
8994 JOURNAL Poult. Sci. 88 (10), 2199-2205 (2009)
8995 PUBMED 19762876
8996 REMARK GeneRIF: Calcitonin acts directly on adrenocortical cells via its
8997 receptor binding and increases responsiveness of ACTH on
8998 corticosterone production in the laying hen.
8999 REFERENCE 2 (bases 1 to 1033)
9000 AUTHORS Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
9001 and Ramachandran R.
9002 TITLE Identification of calcitonin expression in the chicken ovary:
9003 influence of follicular maturation and ovarian steroids
9004 JOURNAL Biol. Reprod. 77 (4), 626-635 (2007)
9005 PUBMED 17582014
9006 REMARK GeneRIF: Ovarian CALCA is possibly involved in regulating
9007 follicular maturation in the chicken ovary.
9008 REFERENCE 3 (bases 1 to 1033)
9009 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
9010 Burnside J, Aggrey SE, Simon J and Cogburn LA.
9011 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
9012 from single and multiple tissue cDNA libraries and CAP3 assembly of
9013 a chicken gene index
9014 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
9015 PUBMED 16554550
9016 REFERENCE 4 (bases 1 to 1033)
9017 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
9018 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
9019 TITLE A comprehensive collection of chicken cDNAs
9020 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
9021 PUBMED 12445392
9022 REFERENCE 5 (bases 1 to 1033)
9023 AUTHORS Tirunagaru VG, Sofer L, Cui J and Burnside J.
9024 TITLE An expressed sequence tag database of T-cell-enriched activated
9025 chicken splenocytes: sequence analysis of 5251 clones
9026 JOURNAL Genomics 66 (2), 144-151 (2000)
9027 PUBMED 10860659
9028 REFERENCE 6 (bases 1 to 1033)
9029 AUTHORS Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
9030 Jullienne A, Moukhtar MS and Lasmoles F.
9031 TITLE Sequence and expression of the chicken calcitonin gene
9032 JOURNAL FEBS Lett. 223 (1), 63-68 (1987)
9033 PUBMED 3666142
9034 REFERENCE 7 (bases 1 to 1033)
9035 AUTHORS Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
9036 Matsuo,H.
9037 TITLE Isolation and determination of the amino acid sequence of chicken
9038 calcitonin I from chicken ultimobranchial glands
9039 JOURNAL J. Biochem. 100 (2), 459-467 (1986)
9040 PUBMED 3782060
9041 REFERENCE 8 (bases 1 to 1033)
9042 AUTHORS Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
9043 and Moukhtar,M.S.
9044 TITLE Isolation and partial characterization of the calcitonin gene in a
9045 lower vertebrate. Predicted structure of avian calcitonin
9046 gene-related peptide
9047 JOURNAL FEBS Lett. 203 (1), 7-10 (1986)
9048 PUBMED 3487468
9049 REFERENCE 9 (bases 1 to 1033)
9050 AUTHORS Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
9051 Moukhtar,M.S.
9052 TITLE Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
9053 direct evidence for the expression of a lower vertebrate
9054 calcitonin-like gene in man and rat
9055 JOURNAL EMBO J. 4 (10), 2603-2607 (1985)
9056 PUBMED 4054101
9057 REFERENCE 10 (bases 1 to 1033)
9058 AUTHORS Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
9059 TITLE Structure of chicken calcitonin predicted by partial nucleotide
9060 sequence of its precursor
9061 JOURNAL FEBS Lett. 180 (1), 113-116 (1985)
9062 PUBMED 3838160
9063 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9064 preliminary review. The reference sequence was derived from
9065 AADN04000235.1, BU262345.1 and AI980061.1.
9066
9067 Transcript Variant: This variant (4) differs in the 5' UTR and
9068 includes an alternate 3' coding region and 3' UTR, compared to
9069 variant 1. The encoded isoform (3) is shorter and has a distinct
9070 C-terminus, compared to isoform 1. This isoform is cleaved to yield
9071 calcitonin gene-related peptide (CGRP).
9072
9073 Sequence Note: This RefSeq record was created from transcripts and
9074 genomic sequence data because no single transcript from the same
9075 breed was available for the full length of the gene. The extent of
9076 this transcript is supported by transcript alignments.
9077
9078 ##Evidence-Data-START##
9079 Transcript exon combination :: BU262345.1 [ECO:0000332]
9080 RNAseq introns :: single sample supports all introns
9081 SAMEA2201366, SAMEA2201368
9082 [ECO:0000348]
9083 ##Evidence-Data-END##
9084 COMPLETENESS: complete on the 3' end.
9085 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9086 1-117 AADN04000235.1 2647646-2647762
9087 118-626 BU262345.1 115-623
9088 627-635 AADN04000235.1 2659325-2659333
9089 636-1003 AI980061.1 1-368
9090 1004-1033 AADN04000235.1 2659702-2659731
9091 FEATURES Location/Qualifiers
9092 source 1..1033
9093 /organism="Gallus gallus"
9094 /mol_type="mRNA"
9095 /db_xref="taxon:9031"
9096 /chromosome="5"
9097 /map="5"
9098 /breed="Red Jungle Fowl"
9099 gene 1..1033
9100 /gene="CALCA"
9101 /gene_synonym="CALC; CGRP"
9102 /note="calcitonin related polypeptide alpha"
9103 /db_xref="CGNC:49721"
9104 /db_xref="GeneID:396256"
9105 misc_feature 60..62
9106 /gene="CALCA"
9107 /gene_synonym="CALC; CGRP"
9108 /note="upstream in-frame stop codon"
9109 CDS 144..521
9110 /gene="CALCA"
9111 /gene_synonym="CALC; CGRP"
9112 /note="isoform 3 preproprotein is encoded by transcript
9113 variant 4; calcitonin gene-related peptide;
9114 calcitonin/calcitonin-related polypeptide, alpha"
9115 /codon_start=1
9116 /product="calcitonin gene-related peptide isoform 3
9117 preproprotein"
9118 /protein_id="NP_001258895.1"
9119 /db_xref="CGNC:49721"
9120 /db_xref="GeneID:396256"
9121 /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
9122 EARRLLNALVKEFIQMTAEELEQASEGNSVTAQKRACNTATCVTHRLADFLSRSGGVG
9123 KNNFVPTNVGSKAFGRRRRSVQI"
9124 sig_peptide 144..218
9125 /gene="CALCA"
9126 /gene_synonym="CALC; CGRP"
9127 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
9128 mat_peptide 381..491
9129 /gene="CALCA"
9130 /gene_synonym="CALC; CGRP"
9131 /product="Calcitonin gene-related peptide"
9132 /experiment="experimental evidence, no additional details
9133 recorded"
9134 /note="propagated from UniProtKB/Swiss-Prot (P10286.2)"
9135 misc_feature 489..491
9136 /gene="CALCA"
9137 /gene_synonym="CALC; CGRP"
9138 /experiment="experimental evidence, no additional details
9139 recorded"
9140 /note="Phenylalanine amide. {ECO:0000250}; propagated from
9141 UniProtKB/Swiss-Prot (P10286.2); amidation site"
9142 ORIGIN
9143 1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
9144 61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
9145 121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
9146 181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
9147 241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
9148 301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
9149 361 gcgtaacagc acagaaaagg gcatgcaaca cagctacctg cgtgacccat cgtctggcag
9150 421 acttcctgag caggtcagga ggagtgggca agaacaactt tgtcccaacc aacgtgggct
9151 481 ctaaggcttt cggcaggcga agaagaagcg ttcaaatata agaagctgaa tgacaacatg
9152 541 cctacggttg atgtgcaatt gaagactcaa cttcaatttc taatgaatgg aactcttctc
9153 601 cacaaatcaa gacagccaaa aagaagatta attttgcatc ctaatattga aagcattttg
9154 661 tttaagatga aaatgagaac acttctgtta tgtatagtac aagggactca agttattcaa
9155 721 gttaaattat tgtatattct ttttatatgc aactccattt caaataaaat gtgacagcat
9156 781 ctattattta tttatcttct agcatatatg tgatccatgc tatttatcct ggcactgctg
9157 841 ccaaaactcg gggagttata ctgaactgct gcctagcgag gcgtgtgtgt ataacatggt
9158 901 gtgctgtgcc ttggtgttaa acacttaact aacctgattg tacagtatgt ttaaaagcaa
9159 961 aacaaaagcc aacctcttaa ctattgtatc atttgtgaat ttaagcaaaa ttaaaaaaaa
9160 1021 gtatttttag ata
9161 //
9162
9163 LOCUS NM_001271965 1036 bp mRNA linear VRT 04-JAN-2017
9164 DEFINITION Gallus gallus calcitonin related polypeptide alpha (CALCA),
9165 transcript variant 3, mRNA.
9166 ACCESSION NM_001271965
9167 VERSION NM_001271965.1
9168 KEYWORDS RefSeq.
9169 SOURCE Gallus gallus (chicken)
9170 ORGANISM Gallus gallus
9171 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
9172 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
9173 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
9174 Phasianidae; Phasianinae; Gallus.
9175 REFERENCE 1 (bases 1 to 1036)
9176 AUTHORS Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
9177 TITLE Calcitonin directly increases adrenocorticotropic
9178 hormone-stimulated corticosterone production in the hen adrenal
9179 gland
9180 JOURNAL Poult. Sci. 88 (10), 2199-2205 (2009)
9181 PUBMED 19762876
9182 REMARK GeneRIF: Calcitonin acts directly on adrenocortical cells via its
9183 receptor binding and increases responsiveness of ACTH on
9184 corticosterone production in the laying hen.
9185 REFERENCE 2 (bases 1 to 1036)
9186 AUTHORS Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
9187 and Ramachandran R.
9188 TITLE Identification of calcitonin expression in the chicken ovary:
9189 influence of follicular maturation and ovarian steroids
9190 JOURNAL Biol. Reprod. 77 (4), 626-635 (2007)
9191 PUBMED 17582014
9192 REMARK GeneRIF: Ovarian CALCA is possibly involved in regulating
9193 follicular maturation in the chicken ovary.
9194 REFERENCE 3 (bases 1 to 1036)
9195 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
9196 Burnside J, Aggrey SE, Simon J and Cogburn LA.
9197 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
9198 from single and multiple tissue cDNA libraries and CAP3 assembly of
9199 a chicken gene index
9200 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
9201 PUBMED 16554550
9202 REFERENCE 4 (bases 1 to 1036)
9203 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
9204 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
9205 TITLE A comprehensive collection of chicken cDNAs
9206 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
9207 PUBMED 12445392
9208 REFERENCE 5 (bases 1 to 1036)
9209 AUTHORS Tirunagaru VG, Sofer L, Cui J and Burnside J.
9210 TITLE An expressed sequence tag database of T-cell-enriched activated
9211 chicken splenocytes: sequence analysis of 5251 clones
9212 JOURNAL Genomics 66 (2), 144-151 (2000)
9213 PUBMED 10860659
9214 REFERENCE 6 (bases 1 to 1036)
9215 AUTHORS Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
9216 Jullienne A, Moukhtar MS and Lasmoles F.
9217 TITLE Sequence and expression of the chicken calcitonin gene
9218 JOURNAL FEBS Lett. 223 (1), 63-68 (1987)
9219 PUBMED 3666142
9220 REFERENCE 7 (bases 1 to 1036)
9221 AUTHORS Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
9222 Matsuo,H.
9223 TITLE Isolation and determination of the amino acid sequence of chicken
9224 calcitonin I from chicken ultimobranchial glands
9225 JOURNAL J. Biochem. 100 (2), 459-467 (1986)
9226 PUBMED 3782060
9227 REFERENCE 8 (bases 1 to 1036)
9228 AUTHORS Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
9229 and Moukhtar,M.S.
9230 TITLE Isolation and partial characterization of the calcitonin gene in a
9231 lower vertebrate. Predicted structure of avian calcitonin
9232 gene-related peptide
9233 JOURNAL FEBS Lett. 203 (1), 7-10 (1986)
9234 PUBMED 3487468
9235 REFERENCE 9 (bases 1 to 1036)
9236 AUTHORS Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
9237 Moukhtar,M.S.
9238 TITLE Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
9239 direct evidence for the expression of a lower vertebrate
9240 calcitonin-like gene in man and rat
9241 JOURNAL EMBO J. 4 (10), 2603-2607 (1985)
9242 PUBMED 4054101
9243 REFERENCE 10 (bases 1 to 1036)
9244 AUTHORS Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
9245 TITLE Structure of chicken calcitonin predicted by partial nucleotide
9246 sequence of its precursor
9247 JOURNAL FEBS Lett. 180 (1), 113-116 (1985)
9248 PUBMED 3838160
9249 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9250 preliminary review. The reference sequence was derived from
9251 BU262345.1, BU203257.1, AADN04000235.1 and AI980061.1.
9252
9253 Transcript Variant: This variant (3) differs in the 5' UTR and
9254 includes an alternate 3' coding region and 3' UTR, compared to
9255 variant 1. The encoded isoform (2) is shorter and has a distinct
9256 C-terminus, compared to isoform 1. This isoform is cleaved to yield
9257 calcitonin gene-related peptide (CGRP).
9258
9259 Sequence Note: This RefSeq record was created from transcripts and
9260 genomic sequence data because no single transcript from the same
9261 breed was available for the full length of the gene. The extent of
9262 this transcript is supported by transcript alignments.
9263
9264 ##Evidence-Data-START##
9265 Transcript exon combination :: BU213401.1, BU203257.1 [ECO:0000332]
9266 RNAseq introns :: single sample supports all introns
9267 SAMEA2201366, SAMEA2201375
9268 [ECO:0000348]
9269 ##Evidence-Data-END##
9270 COMPLETENESS: complete on the 3' end.
9271 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9272 1-1 BU262345.1 1-1
9273 2-65 BU203257.1 3-66
9274 66-70 AADN04000235.1 2647711-2647715
9275 71-211 BU203257.1 73-213
9276 212-213 AADN04000235.1 2655456-2655457
9277 214-728 BU203257.1 217-731
9278 729-1006 AI980061.1 91-368
9279 1007-1036 AADN04000235.1 2659702-2659731
9280 FEATURES Location/Qualifiers
9281 source 1..1036
9282 /organism="Gallus gallus"
9283 /mol_type="mRNA"
9284 /db_xref="taxon:9031"
9285 /chromosome="5"
9286 /map="5"
9287 /breed="Leghorn"
9288 gene 1..1036
9289 /gene="CALCA"
9290 /gene_synonym="CALC; CGRP"
9291 /note="calcitonin related polypeptide alpha"
9292 /db_xref="CGNC:49721"
9293 /db_xref="GeneID:396256"
9294 misc_feature 60..62
9295 /gene="CALCA"
9296 /gene_synonym="CALC; CGRP"
9297 /note="upstream in-frame stop codon"
9298 CDS 144..524
9299 /gene="CALCA"
9300 /gene_synonym="CALC; CGRP"
9301 /note="isoform 2 preproprotein is encoded by transcript
9302 variant 3; calcitonin gene-related peptide;
9303 calcitonin/calcitonin-related polypeptide, alpha"
9304 /codon_start=1
9305 /product="calcitonin gene-related peptide isoform 2
9306 preproprotein"
9307 /protein_id="NP_001258894.1"
9308 /db_xref="CGNC:49721"
9309 /db_xref="GeneID:396256"
9310 /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
9311 EARRLLNALVKEFIQMTAEELEQASEGNSSVTAQKRACNTATCVTHRLADFLSRSGGV
9312 GKNNFVPTNVGSKAFGRRRRSVQI"
9313 sig_peptide 144..218
9314 /gene="CALCA"
9315 /gene_synonym="CALC; CGRP"
9316 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
9317 mat_peptide 384..494
9318 /gene="CALCA"
9319 /gene_synonym="CALC; CGRP"
9320 /product="Calcitonin gene-related peptide"
9321 /experiment="experimental evidence, no additional details
9322 recorded"
9323 /note="propagated from UniProtKB/Swiss-Prot (P10286.2)"
9324 misc_feature 492..494
9325 /gene="CALCA"
9326 /gene_synonym="CALC; CGRP"
9327 /experiment="experimental evidence, no additional details
9328 recorded"
9329 /note="Phenylalanine amide. {ECO:0000250}; propagated from
9330 UniProtKB/Swiss-Prot (P10286.2); amidation site"
9331 ORIGIN
9332 1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
9333 61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
9334 121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
9335 181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
9336 241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
9337 301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
9338 361 gcagcgtaac agcacagaaa agggcatgca acacagctac ctgcgtgacc catcgtctgg
9339 421 cagacttcct gagcaggtca ggaggagtgg gcaagaacaa ctttgtccca accaacgtgg
9340 481 gctctaaggc tttcggcagg cgaagaagaa gcgttcaaat ataagaagct gaatgacaac
9341 541 atgcctacgg ttgatgtgca attgaagact caacttcaat ttctaatgaa tggaactctt
9342 601 ctccacaaat caagacagcc aaaaagaaga ttaattttgc atcctaatat tgaaagcatt
9343 661 ttgtttaaga tgaaaatgag aacacttctg ttatgtatag tacaagggac tcaagttatt
9344 721 caagttaaat tattgtatat tctttttata tgcaactcca tttcaaataa aatgtgacag
9345 781 catctattat ttatttatct tctagcatat atgtgatcca tgctatttat cctggcactg
9346 841 ctgccaaaac tcggggagtt atactgaact gctgcctagc gaggcgtgtg tgtataacat
9347 901 ggtgtgctgt gccttggtgt taaacactta actaacctga ttgtacagta tgtttaaaag
9348 961 caaaacaaaa gccaacctct taactattgt atcatttgtg aatttaagca aaattaaaaa
9349 1021 aaagtatttt tagata
9350 //
9351
9352 LOCUS NM_001271964 912 bp mRNA linear VRT 04-JAN-2017
9353 DEFINITION Gallus gallus calcitonin related polypeptide alpha (CALCA),
9354 transcript variant 2, mRNA.
9355 ACCESSION NM_001271964
9356 VERSION NM_001271964.1
9357 KEYWORDS RefSeq.
9358 SOURCE Gallus gallus (chicken)
9359 ORGANISM Gallus gallus
9360 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
9361 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
9362 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
9363 Phasianidae; Phasianinae; Gallus.
9364 REFERENCE 1 (bases 1 to 912)
9365 AUTHORS Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
9366 TITLE Calcitonin directly increases adrenocorticotropic
9367 hormone-stimulated corticosterone production in the hen adrenal
9368 gland
9369 JOURNAL Poult. Sci. 88 (10), 2199-2205 (2009)
9370 PUBMED 19762876
9371 REMARK GeneRIF: Calcitonin acts directly on adrenocortical cells via its
9372 receptor binding and increases responsiveness of ACTH on
9373 corticosterone production in the laying hen.
9374 REFERENCE 2 (bases 1 to 912)
9375 AUTHORS Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
9376 and Ramachandran R.
9377 TITLE Identification of calcitonin expression in the chicken ovary:
9378 influence of follicular maturation and ovarian steroids
9379 JOURNAL Biol. Reprod. 77 (4), 626-635 (2007)
9380 PUBMED 17582014
9381 REMARK GeneRIF: Ovarian CALCA is possibly involved in regulating
9382 follicular maturation in the chicken ovary.
9383 REFERENCE 3 (bases 1 to 912)
9384 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
9385 Burnside J, Aggrey SE, Simon J and Cogburn LA.
9386 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
9387 from single and multiple tissue cDNA libraries and CAP3 assembly of
9388 a chicken gene index
9389 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
9390 PUBMED 16554550
9391 REFERENCE 4 (bases 1 to 912)
9392 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
9393 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
9394 TITLE A comprehensive collection of chicken cDNAs
9395 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
9396 PUBMED 12445392
9397 REFERENCE 5 (bases 1 to 912)
9398 AUTHORS Tirunagaru VG, Sofer L, Cui J and Burnside J.
9399 TITLE An expressed sequence tag database of T-cell-enriched activated
9400 chicken splenocytes: sequence analysis of 5251 clones
9401 JOURNAL Genomics 66 (2), 144-151 (2000)
9402 PUBMED 10860659
9403 REFERENCE 6 (bases 1 to 912)
9404 AUTHORS Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
9405 Jullienne A, Moukhtar MS and Lasmoles F.
9406 TITLE Sequence and expression of the chicken calcitonin gene
9407 JOURNAL FEBS Lett. 223 (1), 63-68 (1987)
9408 PUBMED 3666142
9409 REFERENCE 7 (bases 1 to 912)
9410 AUTHORS Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
9411 Matsuo,H.
9412 TITLE Isolation and determination of the amino acid sequence of chicken
9413 calcitonin I from chicken ultimobranchial glands
9414 JOURNAL J. Biochem. 100 (2), 459-467 (1986)
9415 PUBMED 3782060
9416 REFERENCE 8 (bases 1 to 912)
9417 AUTHORS Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
9418 and Moukhtar,M.S.
9419 TITLE Isolation and partial characterization of the calcitonin gene in a
9420 lower vertebrate. Predicted structure of avian calcitonin
9421 gene-related peptide
9422 JOURNAL FEBS Lett. 203 (1), 7-10 (1986)
9423 PUBMED 3487468
9424 REFERENCE 9 (bases 1 to 912)
9425 AUTHORS Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
9426 Moukhtar,M.S.
9427 TITLE Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
9428 direct evidence for the expression of a lower vertebrate
9429 calcitonin-like gene in man and rat
9430 JOURNAL EMBO J. 4 (10), 2603-2607 (1985)
9431 PUBMED 4054101
9432 REFERENCE 10 (bases 1 to 912)
9433 AUTHORS Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
9434 TITLE Structure of chicken calcitonin predicted by partial nucleotide
9435 sequence of its precursor
9436 JOURNAL FEBS Lett. 180 (1), 113-116 (1985)
9437 PUBMED 3838160
9438 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9439 preliminary review. The reference sequence was derived from
9440 BU262345.1, BU213401.1, BU335410.1, EU367492.1 and AADN04000235.1.
9441
9442 Transcript Variant: This variant (2) differs in the 5' UTR,
9443 compared to variant 1. Variants 1 and 2 encode the same isoform
9444 (1), which is cleaved to yield calcitonin.
9445
9446 Sequence Note: This RefSeq record was created from transcripts and
9447 genomic sequence data because no single transcript from the same
9448 breed was available for the full length of the gene. The extent of
9449 this transcript is supported by transcript alignments.
9450
9451 ##Evidence-Data-START##
9452 Transcript exon combination :: BU335410.1 [ECO:0000332]
9453 RNAseq introns :: single sample supports all introns
9454 SAMEA2201361, SAMEA2201362
9455 [ECO:0000348]
9456 ##Evidence-Data-END##
9457 COMPLETENESS: complete on the 3' end.
9458 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9459 1-1 BU262345.1 1-1
9460 2-103 BU213401.1 1-102
9461 104-186 BU335410.1 1-83
9462 187-560 EU367492.1 44-417
9463 561-912 AADN04000235.1 2656930-2657281
9464 FEATURES Location/Qualifiers
9465 source 1..912
9466 /organism="Gallus gallus"
9467 /mol_type="mRNA"
9468 /db_xref="taxon:9031"
9469 /chromosome="5"
9470 /map="5"
9471 /breed="Leghorn"
9472 gene 1..912
9473 /gene="CALCA"
9474 /gene_synonym="CALC; CGRP"
9475 /note="calcitonin related polypeptide alpha"
9476 /db_xref="CGNC:49721"
9477 /db_xref="GeneID:396256"
9478 misc_feature 60..62
9479 /gene="CALCA"
9480 /gene_synonym="CALC; CGRP"
9481 /note="upstream in-frame stop codon"
9482 CDS 144..560
9483 /gene="CALCA"
9484 /gene_synonym="CALC; CGRP"
9485 /note="isoform 1 preproprotein is encoded by transcript
9486 variant 2; calcitonin gene-related peptide;
9487 calcitonin/calcitonin-related polypeptide, alpha"
9488 /codon_start=1
9489 /product="calcitonin isoform 1 preproprotein"
9490 /protein_id="NP_001258893.1"
9491 /db_xref="CGNC:49721"
9492 /db_xref="GeneID:396256"
9493 /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
9494 EARRLLNALVKEFIQMTAEELEQASEGNSLDRPISKRCASLSTCVLGKLSQELHKLQT
9495 YPRTDVGAGTPGKKRNVLNDLDHERYANYGETLGNN"
9496 sig_peptide 144..218
9497 /gene="CALCA"
9498 /gene_synonym="CALC; CGRP"
9499 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
9500 misc_feature 480..482
9501 /gene="CALCA"
9502 /gene_synonym="CALC; CGRP"
9503 /experiment="experimental evidence, no additional details
9504 recorded"
9505 /note="Proline amide. {ECO:0000250}; propagated from
9506 UniProtKB/Swiss-Prot (P07660.2); amidation site"
9507 ORIGIN
9508 1 gcgtctgatg aggagttact gacttgagag cacgtggcct ggaggctgag gatggcccct
9509 61 gatgctgttc agaaggcagg cgaagacgaa atcaagcaca gcaaaagcat cgctttgaga
9510 121 gcatagagaa gagagaggaa atcatggtca tgctgaagat ttcatctttc cttgctgttt
9511 181 atgccttggt tgtgtgccag atggacagct tccaggcagc cccagtcaga cctggcttgg
9512 241 agtccatcac agatcgagtg acgctcagtg attacgaagc tcggagatta ttaaatgcgc
9513 301 tggtgaaaga gttcatacag atgacggcag aagagctgga gcaagcctct gaggggaaca
9514 361 gcctggatag acctatttcc aaacgctgtg ccagtctgag tacttgtgtg ctgggcaaac
9515 421 tgtctcaaga attgcacaaa ttgcaaactt accctcgtac tgacgtcggg gctggaactc
9516 481 ctggcaagaa aagaaatgtg ctgaatgacc tggaccatga acgctatgca aactatgggg
9517 541 aaaccctagg aaacaactag acgtgcttaa ttccgccctt ctccccccct cttttttttt
9518 601 ttttttcctt aacctgatgc atgtcgatct aactttgatt gctaactctg ctatgttctt
9519 661 ttgattctgt ttttgacaga gaatgtttga ggtggaccta atgttaggaa gacagaacat
9520 721 aacacacaca tcaagctagg ggaaaaataa atacaaatag acagcgctgc ctcgatttca
9521 781 aataatctta gatattgatt tttaaaaaca aatctagacg aggctcttca tttctggcta
9522 841 ctaaatgtac acgtagactc tttttgtgcc tgcccatgca cttgttcaat aaacctattt
9523 901 ttctataagg at
9524 //
9525
9526 LOCUS NM_001113708 843 bp mRNA linear VRT 04-JAN-2017
9527 DEFINITION Gallus gallus calcitonin related polypeptide alpha (CALCA),
9528 transcript variant 1, mRNA.
9529 ACCESSION NM_001113708 XM_420997
9530 VERSION NM_001113708.1
9531 KEYWORDS RefSeq.
9532 SOURCE Gallus gallus (chicken)
9533 ORGANISM Gallus gallus
9534 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
9535 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
9536 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
9537 Phasianidae; Phasianinae; Gallus.
9538 REFERENCE 1 (bases 1 to 843)
9539 AUTHORS Nakagawa-Mizuyachi K, Takahashi T and Kawashima M.
9540 TITLE Calcitonin directly increases adrenocorticotropic
9541 hormone-stimulated corticosterone production in the hen adrenal
9542 gland
9543 JOURNAL Poult. Sci. 88 (10), 2199-2205 (2009)
9544 PUBMED 19762876
9545 REMARK GeneRIF: Calcitonin acts directly on adrenocortical cells via its
9546 receptor binding and increases responsiveness of ACTH on
9547 corticosterone production in the laying hen.
9548 REFERENCE 2 (bases 1 to 843)
9549 AUTHORS Krzysik-Walker SM, Ocon-Grove OM, Maddineni SB, Hendricks GL 3rd
9550 and Ramachandran R.
9551 TITLE Identification of calcitonin expression in the chicken ovary:
9552 influence of follicular maturation and ovarian steroids
9553 JOURNAL Biol. Reprod. 77 (4), 626-635 (2007)
9554 PUBMED 17582014
9555 REMARK GeneRIF: Ovarian CALCA is possibly involved in regulating
9556 follicular maturation in the chicken ovary.
9557 REFERENCE 3 (bases 1 to 843)
9558 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
9559 Burnside J, Aggrey SE, Simon J and Cogburn LA.
9560 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
9561 from single and multiple tissue cDNA libraries and CAP3 assembly of
9562 a chicken gene index
9563 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
9564 PUBMED 16554550
9565 REFERENCE 4 (bases 1 to 843)
9566 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
9567 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
9568 TITLE A comprehensive collection of chicken cDNAs
9569 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
9570 PUBMED 12445392
9571 REFERENCE 5 (bases 1 to 843)
9572 AUTHORS Tirunagaru VG, Sofer L, Cui J and Burnside J.
9573 TITLE An expressed sequence tag database of T-cell-enriched activated
9574 chicken splenocytes: sequence analysis of 5251 clones
9575 JOURNAL Genomics 66 (2), 144-151 (2000)
9576 PUBMED 10860659
9577 REFERENCE 6 (bases 1 to 843)
9578 AUTHORS Minvielle S, Cressent M, Delehaye MC, Segond N, Milhaud G,
9579 Jullienne A, Moukhtar MS and Lasmoles F.
9580 TITLE Sequence and expression of the chicken calcitonin gene
9581 JOURNAL FEBS Lett. 223 (1), 63-68 (1987)
9582 PUBMED 3666142
9583 REFERENCE 7 (bases 1 to 843)
9584 AUTHORS Homma,T., Watanabe,M., Hirose,S., Kanai,A., Kangawa,K. and
9585 Matsuo,H.
9586 TITLE Isolation and determination of the amino acid sequence of chicken
9587 calcitonin I from chicken ultimobranchial glands
9588 JOURNAL J. Biochem. 100 (2), 459-467 (1986)
9589 PUBMED 3782060
9590 REFERENCE 8 (bases 1 to 843)
9591 AUTHORS Minvielle,S., Cressent,M., Lasmoles,F., Jullienne,A., Milhaud,G.
9592 and Moukhtar,M.S.
9593 TITLE Isolation and partial characterization of the calcitonin gene in a
9594 lower vertebrate. Predicted structure of avian calcitonin
9595 gene-related peptide
9596 JOURNAL FEBS Lett. 203 (1), 7-10 (1986)
9597 PUBMED 3487468
9598 REFERENCE 9 (bases 1 to 843)
9599 AUTHORS Lasmoles,F., Jullienne,A., Day,F., Minvielle,S., Milhaud,G. and
9600 Moukhtar,M.S.
9601 TITLE Elucidation of the nucleotide sequence of chicken calcitonin mRNA:
9602 direct evidence for the expression of a lower vertebrate
9603 calcitonin-like gene in man and rat
9604 JOURNAL EMBO J. 4 (10), 2603-2607 (1985)
9605 PUBMED 4054101
9606 REFERENCE 10 (bases 1 to 843)
9607 AUTHORS Lasmoles,F., Jullienne,A., Desplan,C., Milhaud,G. and Moukhtar,M.S.
9608 TITLE Structure of chicken calcitonin predicted by partial nucleotide
9609 sequence of its precursor
9610 JOURNAL FEBS Lett. 180 (1), 113-116 (1985)
9611 PUBMED 3838160
9612 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9613 preliminary review. The reference sequence was derived from
9614 AADN04000235.1 and BM490287.1.
9615 On Dec 20, 2012 this sequence version replaced gi:118091210.
9616
9617 Transcript Variant: This variant (1) represents the shortest
9618 transcript and encodes the longest isoform (1). Variants 1 and 2
9619 encode the same isoform (1), which is cleaved to yield calcitonin.
9620
9621 Sequence Note: This RefSeq record was created from transcripts and
9622 genomic sequence data because no single transcript from the same
9623 breed was available for the full length of the gene. The extent of
9624 this transcript is supported by transcript alignments.
9625
9626 ##Evidence-Data-START##
9627 Transcript exon combination :: CV890417.1, CV037669.1 [ECO:0000332]
9628 RNAseq introns :: single sample supports all introns
9629 SAMEA2201357, SAMEA2201361
9630 [ECO:0000348]
9631 ##Evidence-Data-END##
9632 COMPLETENESS: complete on the 3' end.
9633 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9634 1-9 AADN04000235.1 2654365-2654373
9635 10-467 BM490287.1 1-458
9636 468-843 AADN04000235.1 2656906-2657281
9637 FEATURES Location/Qualifiers
9638 source 1..843
9639 /organism="Gallus gallus"
9640 /mol_type="mRNA"
9641 /db_xref="taxon:9031"
9642 /chromosome="5"
9643 /map="5"
9644 /breed="Red Jungle Fowl"
9645 gene 1..843
9646 /gene="CALCA"
9647 /gene_synonym="CALC; CGRP"
9648 /note="calcitonin related polypeptide alpha"
9649 /db_xref="CGNC:49721"
9650 /db_xref="GeneID:396256"
9651 misc_feature 48..50
9652 /gene="CALCA"
9653 /gene_synonym="CALC; CGRP"
9654 /note="upstream in-frame stop codon"
9655 CDS 75..491
9656 /gene="CALCA"
9657 /gene_synonym="CALC; CGRP"
9658 /note="isoform 1 preproprotein is encoded by transcript
9659 variant 1; calcitonin gene-related peptide;
9660 calcitonin/calcitonin-related polypeptide, alpha"
9661 /codon_start=1
9662 /product="calcitonin isoform 1 preproprotein"
9663 /protein_id="NP_001107180.1"
9664 /db_xref="CGNC:49721"
9665 /db_xref="GeneID:396256"
9666 /translation="MVMLKISSFLAVYALVVCQMDSFQAAPVRPGLESITDRVTLSDY
9667 EARRLLNALVKEFIQMTAEELEQASEGNSLDRPISKRCASLSTCVLGKLSQELHKLQT
9668 YPRTDVGAGTPGKKRNVLNDLDHERYANYGETLGNN"
9669 sig_peptide 75..149
9670 /gene="CALCA"
9671 /gene_synonym="CALC; CGRP"
9672 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
9673 misc_feature 411..413
9674 /gene="CALCA"
9675 /gene_synonym="CALC; CGRP"
9676 /experiment="experimental evidence, no additional details
9677 recorded"
9678 /note="Proline amide. {ECO:0000250}; propagated from
9679 UniProtKB/Swiss-Prot (P07660.2); amidation site"
9680 ORIGIN
9681 1 gcggctcggc ggcagcattc ggcctccgct ccgtgcggca ccgcagctga gacccgcacc
9682 61 gccgagagga aatcatggtc atgctgaaga tttcatcttt ccttgctgtt tatgccttgg
9683 121 ttgtgtgcca gatggacagc ttccaggcag ccccagtcag acctggcttg gagtccatca
9684 181 cagatcgagt gacgctcagt gattacgaag ctcggagatt attaaatgcg ctggtgaaag
9685 241 agttcataca gatgacggca gaagagctgg agcaagcctc tgaggggaac agcctggata
9686 301 gacctatttc caaacgctgt gccagtctga gtacttgtgt gctgggcaaa ctgtctcaag
9687 361 aattgcacaa attgcaaact taccctcgta ctgacgtcgg ggctggaact cctggcaaga
9688 421 aaagaaatgt gctgaatgac ctggaccatg aacgctatgc aaactatggg gaaaccctag
9689 481 gaaacaacta gacgtgctta attccgccct tctccccccc tctttttttt tttttttcct
9690 541 taacctgatg catgtcgatc taactttgat tgctaactct gctatgttct tttgattctg
9691 601 tttttgacag agaatgtttg aggtggacct aatgttagga agacagaaca taacacacac
9692 661 atcaagctag gggaaaaata aatacaaata gacagcgctg cctcgatttc aaataatctt
9693 721 agatattgat ttttaaaaac aaatctagac gaggctcttc atttctggct actaaatgta
9694 781 cacgtagact ctttttgtgc ctgcccatgc acttgttcaa taaacctatt tttctataag
9695 841 gat
9696 //
9697
9698 LOCUS NM_001271936 2756 bp mRNA linear VRT 04-JAN-2017
9699 DEFINITION Gallus gallus iron-sulfur cluster assembly 1 (ISCA1), mRNA.
9700 ACCESSION NM_001271936 NM_001012946 XM_425036
9701 VERSION NM_001271936.1
9702 KEYWORDS RefSeq.
9703 SOURCE Gallus gallus (chicken)
9704 ORGANISM Gallus gallus
9705 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
9706 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
9707 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
9708 Phasianidae; Phasianinae; Gallus.
9709 REFERENCE 1 (bases 1 to 2756)
9710 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
9711 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
9712 P, Hayashizaki Y and Buerstedde JM.
9713 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
9714 gene function analysis
9715 JOURNAL Genome Biol. 6 (1), R6 (2005)
9716 PUBMED 15642098
9717 REFERENCE 2 (bases 1 to 2756)
9718 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
9719 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
9720 TITLE A comprehensive collection of chicken cDNAs
9721 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
9722 PUBMED 12445392
9723 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9724 preliminary review. The reference sequence was derived from
9725 BU398918.1 and AJ720560.1.
9726 On Dec 18, 2012 this sequence version replaced gi:61098433.
9727
9728 Sequence Note: This RefSeq record was created from transcripts of
9729 different breeds because no single transcript from the same breed
9730 was available for the full length of the gene. The extent of this
9731 transcript is supported by transcript alignments.
9732
9733 ##Evidence-Data-START##
9734 Transcript exon combination :: AJ720560.1, BU110305.1 [ECO:0000332]
9735 RNAseq introns :: single sample supports all introns
9736 SAMEA2201368, SAMEA2201375
9737 [ECO:0000348]
9738 ##Evidence-Data-END##
9739
9740 ##RefSeq-Attributes-START##
9741 gene product(s) localized to mito. :: inferred from homology
9742 ##RefSeq-Attributes-END##
9743 COMPLETENESS: complete on the 3' end.
9744 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9745 1-41 BU398918.1 1-41
9746 42-2756 AJ720560.1 1-2715
9747 FEATURES Location/Qualifiers
9748 source 1..2756
9749 /organism="Gallus gallus"
9750 /mol_type="mRNA"
9751 /db_xref="taxon:9031"
9752 /chromosome="Z"
9753 /map="Z"
9754 /breed="Leghorn"
9755 gene 1..2756
9756 /gene="ISCA1"
9757 /gene_synonym="HBLD2"
9758 /note="iron-sulfur cluster assembly 1"
9759 /db_xref="CGNC:9567"
9760 /db_xref="GeneID:427463"
9761 CDS 95..484
9762 /gene="ISCA1"
9763 /gene_synonym="HBLD2"
9764 /note="iron sulfur assembly protein IscA; HESB-like
9765 domain-containing protein 2"
9766 /codon_start=1
9767 /product="iron-sulfur cluster assembly 1 homolog,
9768 mitochondrial"
9769 /protein_id="NP_001258865.1"
9770 /db_xref="CGNC:9567"
9771 /db_xref="GeneID:427463"
9772 /translation="MASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKQLLKDQPE
9773 HVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYV
9774 EDKLSSEFVFNNPNIKGTCGCGESFNI"
9775 transit_peptide 95..130
9776 /gene="ISCA1"
9777 /gene_synonym="HBLD2"
9778 /experiment="experimental evidence, no additional details
9779 recorded"
9780 /note="Mitochondrion. {ECO:0000255}; propagated from
9781 UniProtKB/Swiss-Prot (Q5ZJ74.1)"
9782 mat_peptide 131..481
9783 /gene="ISCA1"
9784 /gene_synonym="HBLD2"
9785 /product="Iron-sulfur cluster assembly 1 homolog,
9786 mitochondrial"
9787 /experiment="experimental evidence, no additional details
9788 recorded"
9789 /note="propagated from UniProtKB/Swiss-Prot (Q5ZJ74.1)"
9790 ORIGIN
9791 1 ggcggatggc ggaagcgcgt cgggaggggt ggtgtcgcgg cgtgacgtcg gtggtgccca
9792 61 tggcagaggg cagaggacgg ggtggagggg cgtgatggca tcgtcggtgg tgcgggccac
9793 121 ggtgcgcgcc gtcagcaaga ggaagatcca ggccacccgc gccgccctca ctctgacccc
9794 181 gtcagccgtc cagaagataa aacaacttct taaagaccag cctgagcatg taggtgtgaa
9795 241 agtaggtgtt cgtacaaggg gatgcaatgg actttcttat acattagaat atacaaagtc
9796 301 taaaggagac tctgatgaag aagtagttca agatggggtt agagtgttta ttgagaagaa
9797 361 agcgcagctg acactcctag gaactgaaat ggactatgta gaagataaat tgtccagtga
9798 421 atttgtcttc aataatccaa acattaaagg aacatgtggc tgtggagaaa gctttaacat
9799 481 ttgaaatctc aggactactt ctttgacttt aaacatcaca agacacttgc tagttggctt
9800 541 tcagaagcag atcaattttc ttcagtttct agggtgtgta aagtctggac accactaagg
9801 601 aaaataaagt taagtcatgt tgaatatgta aattgtgtgt taaattgcag cactgatgca
9802 661 gttatgctgt aacttgtgat gagttggaat ccgaaaggta agaacagtaa gtgctatcat
9803 721 aatgtcactg tacttttaca tgccaaggaa ataaaactct aatattcttt tcctttgcaa
9804 781 ttttctttgt ccactccact cattccccat ccagaactga tgcaatctgc aaaagtatat
9805 841 tgccagtata ttctgagttg atttaaagga gggaaaaaag aaaaatcacc gtttatagat
9806 901 gttttatata cacagacata tggtcttcag tttcaaagtt cactgattat gtaaatgctt
9807 961 actttccttt cttagatttc tgatactttc atgtttttat gcgtaggttt tctggtagcc
9808 1021 tactttcctc caaatccaga gaagtccaaa aagaagtttg tatattagtg tagtggtagg
9809 1081 ctgttgcagc actgcttgta gaaatactca aaaatgtact cactgaattt taatcccgtt
9810 1141 ccttgccttg ttgaaggcac agcctatgtt gtacttagtg attttcaaaa acataaaata
9811 1201 tattgaggta ctggagtgct aaggcaggat acagcccttg ttcctcacat ttctgttgtt
9812 1261 tctttcgtga cttaaatggc agaggtgtta aaaattatcc agattttgat tctgtattca
9813 1321 cagaatgtgt ctgtattctc attatgctat ctgtctacca aagccataag ccgctttttc
9814 1381 tgggagagaa atcttaactt ttttttaacc gtgcgtgcta ctcgttctgt tagaactcta
9815 1441 aactctgctt agtaactgtg tagcactagg atttttcatt tcaaaagctt acagtaacct
9816 1501 ctatgtaacg gctaaccaaa ggttaattta gtaacaggaa accactcatc atttaaaaaa
9817 1561 aaaaaaaaaa gcttttattg agtaattatt ttaaaaataa ttctgtcagt aattaaaaaa
9818 1621 atatatatca gattactcct aattagatta ttccctttct gaagcattgt ttttcaagct
9819 1681 gatggtcttc cactggaaat caggcagaag tgtaaacatt tctccaggcc ttccaagagc
9820 1741 tgataggaga aaagtacagt tccatccttt tatctttaat ttccctgatt gtctaaagag
9821 1801 ggcactgtgc agctaagcta cttccttttg tagacaagat agtatcttgt taatctggga
9822 1861 aactaacctg aacacttagt cagaagagtg gagttagaaa gtagaggatt ctggggactg
9823 1921 ggctcttagc atcatgtatg cttgcctgta acaacttggc agtagtgaca tactaaagat
9824 1981 gtagacttgc agccagttag atctggcttg agaaaatatg tagagacaag aataaaaatg
9825 2041 aaaaacttac atcgttcttg atatgtactg cataggaatt gaaggccaga atttccagag
9826 2101 ctatagttta atattagatg cttgaatttc agttgtatac tatgtcacct tttggtataa
9827 2161 aaacactttt tcctttagta gtcaactgtt atacacagtt actttatttt atacagtaat
9828 2221 ccaggagtaa ctggtgtaac actggttagg tgaatttata gtgccgtaaa cgctttcgtc
9829 2281 ttgccaaaca aaaatccggt taatgtgata gtatgtctaa aacttcaagc taagggcatt
9830 2341 tcttcagatt ggtgtttctg tgctccttgc tagcagataa gaccatgaat gtggtagcac
9831 2401 tggtgtttgc taagagtgct ttgactttac tcatttcact tgtttcagtg tgcatctggt
9832 2461 tttggggatg tttttggacc tgtgcacaca cattaatctt tttcgtgtgt tttgtgtata
9833 2521 tgccttgaat ggaagtttga attttcatac tctcatgaaa taatctttta aaatgtgtta
9834 2581 atttactgac ccataacgca cagtctgtta aagtaagctt ctgcttaagt gctatttact
9835 2641 gttctatagg cacatggttt tgtcagttga tacaattttg tgcaatactg tatgtagagt
9836 2701 tctgagttat tataataaat attgcctgtt ggtaaatgtg aaaaaaaaaa aaaaaa
9837 //
9838
9839 LOCUS NM_001271894 5056 bp mRNA linear VRT 04-JAN-2017
9840 DEFINITION Gallus gallus podocalyxin like (PODXL), mRNA.
9841 ACCESSION NM_001271894 XM_003640324 XM_416475
9842 VERSION NM_001271894.1
9843 KEYWORDS RefSeq.
9844 SOURCE Gallus gallus (chicken)
9845 ORGANISM Gallus gallus
9846 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
9847 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
9848 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
9849 Phasianidae; Phasianinae; Gallus.
9850 REFERENCE 1 (bases 1 to 5056)
9851 AUTHORS Nielsen JS, Graves ML, Chelliah S, Vogl AW, Roskelley CD and
9852 McNagny KM.
9853 TITLE The CD34-related molecule podocalyxin is a potent inducer of
9854 microvillus formation
9855 JOURNAL PLoS ONE 2 (2), E237 (2007)
9856 PUBMED 17311105
9857 REMARK GeneRIF: Recombinant chicken podocalyxin recruits NHERF-1 to the
9858 apical domain of human MCF-7 cells and promotes microvillus
9859 formation. Podocalyxin.
9860 Publication Status: Online-Only
9861 REFERENCE 2 (bases 1 to 5056)
9862 AUTHORS McNagny KM, Pettersson I, Rossi F, Flamme I, Shevchenko A, Mann M
9863 and Graf T.
9864 TITLE Thrombomucin, a novel cell surface protein that defines
9865 thrombocytes and multipotent hematopoietic progenitors
9866 JOURNAL J. Cell Biol. 138 (6), 1395-1407 (1997)
9867 PUBMED 9298993
9868 COMMENT VALIDATED REFSEQ: This record has undergone validation or
9869 preliminary review. The reference sequence was derived from
9870 AADN04000326.1 and Y13978.1.
9871 On or before Dec 12, 2012 this sequence version replaced
9872 gi:363727360, gi:363727362.
9873
9874 Sequence Note: This RefSeq record was created from transcript and
9875 genomic sequence data because no single transcript from the same
9876 breed was available for the full length of the gene. The extent of
9877 this transcript is supported by transcript alignments.
9878
9879 ##Evidence-Data-START##
9880 Transcript exon combination :: Y13978.1 [ECO:0000332]
9881 RNAseq introns :: single sample supports all introns
9882 SAMEA2201357, SAMEA2201358
9883 [ECO:0000348]
9884 ##Evidence-Data-END##
9885 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
9886 1-4 AADN04000326.1 968732-968735 c
9887 5-1466 Y13978.1 15-1476
9888 1467-1467 AADN04000326.1 934002-934002 c
9889 1468-1909 Y13978.1 1478-1919
9890 1910-5056 AADN04000326.1 928033-931179 c
9891 FEATURES Location/Qualifiers
9892 source 1..5056
9893 /organism="Gallus gallus"
9894 /mol_type="mRNA"
9895 /db_xref="taxon:9031"
9896 /chromosome="1"
9897 /map="1"
9898 /breed="Red Jungle Fowl"
9899 gene 1..5056
9900 /gene="PODXL"
9901 /gene_synonym="MEP21; PC; PCLP-1"
9902 /note="podocalyxin like"
9903 /db_xref="CGNC:49459"
9904 /db_xref="GeneID:395755"
9905 CDS 50..1765
9906 /gene="PODXL"
9907 /gene_synonym="MEP21; PC; PCLP-1"
9908 /note="thrombomucin; podocalyxin-like protein 1"
9909 /codon_start=1
9910 /product="podocalyxin precursor"
9911 /protein_id="NP_001258823.1"
9912 /db_xref="CGNC:49459"
9913 /db_xref="GeneID:395755"
9914 /translation="MRAPLLLPLLPLLLFGVSSGNNDKTTHSTTVSPETTKQITTITV
9915 TTSQVQGSISASKPSSTAPTAVMSFTKAQEAATSSKQHDSSTSSIPPPSTSITPSIIT
9916 TSPQGKTPSTPALTHTPDQNTKTTGRQDDTSHVSVASTSASQQVSSSASAAVPTTTSA
9917 VTSSATQQKVSPTDSSEILLKPSASPNSTQVTSPSRTPKGFLSTVTTSPHIADNGSTA
9918 LNQLKSTVSSSEVPVSSFLDKDHSVSSSTSATNQHLSLSSHRPTSPVPKFECSTPHSG
9919 SVPSTSSKTSLSSPSSSTKNATVTTTMTTAKAAYTSQGDGSVTHKSGVTAQSPTSAPL
9920 PTPTLKDHMKSKSPDQTHSNVSPPNEVICEDQIGEVRPILNLKEEKTCDDWKKASNEA
9921 FFEVFCSGRRHAFNSTRDRCTVKLASSNHRRWAVHVIVHRVLDPAAVFEELKEKRNEL
9922 EKLGITNVTYLNQEMEEEIKDQFSTPLIITIVTLAGSLLLIAAIYGCCHQRFSQKKSQ
9923 QRLTEELQTMENGYHDNPTLEVMETGSEMQEKKVNLNGELGDSWIVPLDTIMKEDLEE
9924 EDTHL"
9925 sig_peptide 50..109
9926 /gene="PODXL"
9927 /gene_synonym="MEP21; PC; PCLP-1"
9928 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
9929 ORIGIN
9930 1 aacggggaga gcgccgggag ccggagcggg gacggccgca cagagcacca tgcgggcacc
9931 61 gctgctgctg ccgctgctcc cgctgctgct gttcggtgtc agctctggca ataatgataa
9932 121 aactacacat tcgaccacag tgagtccaga aacaactaag cagatcacca ctattacagt
9933 181 caccaccagc caggtgcaag ggagtatctc tgcaagcaaa ccaagcagca cagctcccac
9934 241 cgctgtgatg tccttcacca aagctcaaga ggcagccact tcaagcaaac aacatgactc
9935 301 ttcaacatca tccatcccac caccatcaac cagcatcacc cccagcatca tcactacaag
9936 361 cccacaggga aaaacaccat ccactcctgc attgacacac accccagatc aaaacaccaa
9937 421 gaccacaggc agacaagatg acacatcaca tgtctcagtg gcatcaacca gtgcatctca
9938 481 gcaggtcagc tcttcagcca gcgccgctgt cccaacaacc acctctgctg tcacctccag
9939 541 tgctacacag cagaaggtga gccctacaga cagctcagaa atcttactca aacccagtgc
9940 601 aagtcctaat tccactcaag taaccagccc ttcacgcacc ccaaaaggct tcctgtctac
9941 661 tgtcacaaca tctccacaca tagcagacaa tggaagcact gctttaaacc agttgaaaag
9942 721 tactgtgtca agttctgaag tcccagtgag cagctttttg gacaaggacc acagtgtctc
9943 781 ttcttctaca tctgccacca accagcatct ctcactttcc agtcatcgtc ccacttctcc
9944 841 agtcccgaaa tttgaatgtt ctacccctca tagtggatcc gtgccctcta ccagcagtaa
9945 901 aacatctctg tcttcgccat ctagcagcac aaagaatgcc acagtcacaa ccaccatgac
9946 961 aactgctaaa gcagcataca caagccaggg agatggatct gtgacacaca aatctggagt
9947 1021 tactgctcag agccccacca gtgcaccact gccaacaccg accctgaaag accacatgaa
9948 1081 gagcaagagt cctgaccaga cacactcgaa tgtttctccc ccaaatgagg tgatttgtga
9949 1141 agaccagata ggagaggtgc ggcccatcct aaatctgaaa gaagagaaaa cttgtgacga
9950 1201 ctggaagaaa gccagtaatg aggccttctt cgaggtcttc tgctcaggca ggcggcacgc
9951 1261 attcaacagc acgagagaca ggtgcacggt gaaactggcc tcctccaatc atcgtcgctg
9952 1321 ggctgtgcat gtcattgtgc atcgcgttct ggaccctgca gcagtctttg aagagctgaa
9953 1381 agaaaagagg aatgagttag agaagcttgg catcaccaac gtcacctacc tcaaccagga
9954 1441 gatggaggaa gagatcaagg atcagttcag cacacccctc ataatcacca ttgtcaccct
9955 1501 ggctggctcc ctgctgctca tcgcagcaat ctacggctgc tgtcaccaac gcttctccca
9956 1561 aaagaagagc cagcagcgcc tgacagagga gctacagaca atggagaatg gctaccatga
9957 1621 taaccccaca ctggaggtga tggaaacggg ctctgaaatg caggagaaga aggtgaacct
9958 1681 taacggggag ctgggggaca gctggatcgt tcctcttgac accatcatga aggaggacct
9959 1741 agaggaagag gatacgcatt tatagggtgc aggatttgag caagcaaaaa acaaccccct
9960 1801 gaaacaccta atccctttcc ctaaaaaaca gaaaacaaac ataaccctcc tgtacatgta
9961 1861 cacaattcca aaggaaggca gaattccaaa caaaccccag aaaacccctt gtgagctaat
9962 1921 cacagccacc acacagggtg aaggatggaa gagaaggaca caagaagaca cctccatggc
9963 1981 acatcaccaa catgacacag tggccacatc cagtccagca gctctgtcac ccatgggtgc
9964 2041 tcctggggac ctgtccagca gattggccaa tcctagcagg gatggctttg ctgctctgct
9965 2101 ctctccaaac agggatgctt gaggctttct agcagcaggg atgctgtatc ccctcccgtt
9966 2161 ccccaagtgc atcctccagc ttccaagtga ttcgaaaagt aaaaagaaat gtagtgagga
9967 2221 tgggagaggg agcacagctt gtgatagcca gctggcactt agaagataga gctagaaaaa
9968 2281 tcctctggcc catgctgttt aatcatcgtc ctcccctaca gctcccttgg aaaacaccca
9969 2341 gggactgagc acaaagagct ggaatgctcc atttgctcct ttcttatcca ctttccatcc
9970 2401 tcacccaact gctctttaaa aatgcacact ggccacactt tatggcataa gcaaatgcat
9971 2461 gcatccaggc atggctggac tgggggtgtt gaggccaaat cccacactgc ctttgtcagc
9972 2521 cccacaaagg gctggggcag gttctggtta cagaccagaa gagatgaagg ggatagtgca
9973 2581 gcaccttcca gtgagaggga gaggaaaagg tgtcactcct tgattttgta tctctaaggg
9974 2641 agtgtttaat gagacaaaga ccaaccgaat gctgtaggtg gttttggttg taaaggagcc
9975 2701 cagctgtaac acagaccagt tctatggttg catttagcta cggaagcatc cgatcacctc
9976 2761 ccagtagtga tgcagcacac ccattttctc ctgaggctgg tgctgatgcg tgcagcgatg
9977 2821 ctttgttctg gcagcgaatt ctgtgctcat gttgtcttgt gctaactaca gaaacaatac
9978 2881 aagagcagca gaggtgtgag ccaggtaact tggctgcagt cagagttttc catccgttca
9979 2941 gctcttggtg tttcctctcc atgaggttgg tgatctccat cctcatcctc aaggttttcc
9980 3001 tcttcagaag tacttaaaat agcagacatc tgtgaagaag cctccagcaa ggcttgtact
9981 3061 gaacctcggt ttcctgtcaa ggtctccctt tgcgataaat cttcaaaggg aaaaaaaaaa
9982 3121 aaaaaggagc agaaaatggc tggactaagg ccatttgtgg atttcccatt cctgccacag
9983 3181 ttcctcagtg gctctagaag gagagcttca cagcaggcag tctggtgtgg aagggacctg
9984 3241 aagtcccttg ggtgagggca tctcctgtca tctcatgcat catcacagca cgccgaggtt
9985 3301 ggaacgaacc tctgggttca tctggtctaa tccctgcacc agcagggaca cccagagctc
9986 3361 tgcccaggac cacgtccagg tgggtttgaa gatctccaag ggagaaatgc tcacattgag
9987 3421 gtgctgtgca gcaaatccac agcagtcctg gtgaggcaga ggagctccag gtcaatgcaa
9988 3481 tggagaagcc attcctaagg ctgtcccaga agatgggcaa agataaagag gtgaggagaa
9989 3541 atgaaaacaa tggcaaaact ctgctctagc tcatcagagt tgctcacaaa tagagtggtc
9990 3601 agagcagctt gctcagctcc aggacagaag ctggcagaag atgcatcttc tcccatgggc
9991 3661 cagctatttt ccttctctcc cgcactgaag gacatagttg aaagcgttca agcctatcta
9992 3721 tttttgtatg taaatattac tgctattcat tagcaatgta ttccgcacac ttcacttatc
9993 3781 tgtgcactgc agtacgggga agcaattttg gagggggaaa attaaaaaac aaaaaaaaaa
9994 3841 tactaaaaaa gctaaaggcc tgtctggtag gggattgcaa ctcaacagat agcaggagaa
9995 3901 catctgatga agctgctcgg ataaccccat gctgctgcac gtcagcatcg tgttaacatt
9996 3961 ggcaaattgg tcttggggtg ggcagcagca cgttcagctc ttaatgtcca aaccagcctt
9997 4021 aaggaactgc tctggttgtt tgtaatgctt ttggaagcat gttgcttccc agctgcccag
9998 4081 gatgggtctt tggactcata tttctgtcct tagcataaaa taaaagcagt acgtgcctaa
9999 4141 ggtccccttc cagtgaagag atgccaaagt gctttaatga atcaggtcca aagactttcc
10000 4201 cagagaaccc tatgaaggct tgaaatcaag caaccttaaa tctttcagag cagagaccgg
10001 4261 tggagatagt aactgctcgg caagtgctta cagtgattta tatttgaata ggaattgtac
10002 4321 atttatttat ttttccagac accatatttt taaaccacta atattttata gtagattttc
10003 4381 cttcccctat ttaaagaact atttccttgg gaaaaaaaaa ataataaagt ttttatgttg
10004 4441 gtaacattct ttttgcaaaa aaataaaaca tcaggtagga aatgcagcat cttcagcctt
10005 4501 aacaattccc ttcatagact gtagccacaa ctgttagacc aaaaagatct acccatgcat
10006 4561 ttcctccctg cccctctctc cttccccttg ctcctcttct cttccccaaa atagctttaa
10007 4621 cacccaatat gctgtacaag gactattacc ttttggtaag acttttgtaa gcagttcaga
10008 4681 tgttcttgca agagactttt ctatttgcag attcacaagg agcatgtaaa tactttagga
10009 4741 ccatttatct cccactcaca gtgccatgac ccaaccgagc aggttgatgc tgcgtcttgc
10010 4801 ctacagccga agatgtaacc cacaatgggc tgcagaagga gaacctattt cccgaggcag
10011 4861 ctatccattg aaccttgcaa atattgtaga gctctcatgt actgtatagc agcatctctc
10012 4921 gtggggacag gagtctgatt tacactggaa tttaatgagg aactggattg tagagattat
10013 4981 tcttgcattt tcctacaaat atattttgaa agcatcatgt atttctgtca ataaacattc
10014 5041 gtatgtaaga gattca
10015 //
10016
10017 LOCUS NM_205450 772 bp mRNA linear VRT 04-JAN-2017
10018 DEFINITION Gallus gallus troponin C2, fast skeletal type (TNNC2), mRNA.
10019 ACCESSION NM_205450
10020 VERSION NM_205450.2
10021 KEYWORDS RefSeq.
10022 SOURCE Gallus gallus (chicken)
10023 ORGANISM Gallus gallus
10024 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10025 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10026 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10027 Phasianidae; Phasianinae; Gallus.
10028 REFERENCE 1 (bases 1 to 772)
10029 AUTHORS Knowles AC, Irving M and Sun YB.
10030 TITLE Conformation of the troponin core complex in the thin filaments of
10031 skeletal muscle during relaxation and active contraction
10032 JOURNAL J. Mol. Biol. 421 (1), 125-137 (2012)
10033 PUBMED 22579625
10034 REMARK GeneRIF: A model of the orientation of the C-terminal lobe of
10035 troponin C (TnC) in skeletal muscle.
10036 REFERENCE 2 (bases 1 to 772)
10037 AUTHORS Pearson DS, Swartz DR and Geeves MA.
10038 TITLE Fast pressure jumps can perturb calcium and magnesium binding to
10039 troponin C F29W
10040 JOURNAL Biochemistry 47 (46), 12146-12158 (2008)
10041 PUBMED 18942859
10042 REMARK GeneRIF: Fast pressure jumps can perturb calcium and magnesium
10043 binding to troponin C F29W.(
10044 REFERENCE 3 (bases 1 to 772)
10045 AUTHORS Fidalgo da Silva E, Freire MM, Barrabin H, Sorenson MM, Tikunova S,
10046 Johnson JD, Chandra M, Pearlstone JR and Scofano HM.
10047 TITLE Troponin C/calmodulin chimeras as erythrocyte plasma membrane
10048 Ca2+-ATPase activators
10049 JOURNAL Int. J. Biochem. Cell Biol. 38 (2), 209-221 (2006)
10050 PUBMED 16213185
10051 REMARK GeneRIF: Data show that a recombinant troponin C/calmodulin
10052 chimera, in which the carboxyl-terminal domain of TnC is replaced
10053 by that of CaM, has the same ability as CaM to bind and transmit
10054 the signal to calcium sites on the enzyme.
10055 REFERENCE 4 (bases 1 to 772)
10056 AUTHORS Murakami K, Yumoto F, Ohki SY, Yasunaga T, Tanokura M and
10057 Wakabayashi T.
10058 TITLE Structural basis for Ca2+-regulated muscle relaxation at
10059 interaction sites of troponin with actin and tropomyosin
10060 JOURNAL J. Mol. Biol. 352 (1), 178-201 (2005)
10061 PUBMED 16061251
10062 REMARK GeneRIF: Results describe the solution structures of a 'mobile'
10063 actin-binding domain (approximately 6.1 kDa) in the troponin
10064 ternary complex.
10065 REFERENCE 5 (bases 1 to 772)
10066 AUTHORS Satyshur KA, Pyzalska D, Greaser M, Rao ST and Sundaralingam M.
10067 TITLE Structure of chicken skeletal muscle troponin C at 1.78 A
10068 resolution
10069 JOURNAL Acta Crystallogr. D Biol. Crystallogr. 50 (PT 1), 40-49 (1994)
10070 PUBMED 15299475
10071 REFERENCE 6 (bases 1 to 772)
10072 AUTHORS Shaw GS, Hodges RS and Sykes BD.
10073 TITLE Determination of the solution structure of a synthetic two-site
10074 calcium-binding homodimeric protein domain by NMR spectroscopy
10075 JOURNAL Biochemistry 31 (40), 9572-9580 (1992)
10076 PUBMED 1390738
10077 REFERENCE 7 (bases 1 to 772)
10078 AUTHORS Golosinska K, Pearlstone JR, Borgford T, Oikawa K, Kay CM,
10079 Carpenter MR and Smillie LB.
10080 TITLE Determination of and corrections to sequences of turkey and chicken
10081 troponins-C. Effects of Thr-130 to Ile mutation on Ca2+ affinity
10082 JOURNAL J. Biol. Chem. 266 (24), 15797-15809 (1991)
10083 PUBMED 1908459
10084 REFERENCE 8 (bases 1 to 772)
10085 AUTHORS Reinach FC and Karlsson R.
10086 TITLE Cloning, expression, and site-directed mutagenesis of chicken
10087 skeletal muscle troponin C
10088 JOURNAL J. Biol. Chem. 263 (5), 2371-2376 (1988)
10089 PUBMED 2963002
10090 REFERENCE 9 (bases 1 to 772)
10091 AUTHORS Satyshur KA, Rao ST, Pyzalska D, Drendel W, Greaser M and
10092 Sundaralingam M.
10093 TITLE Refined structure of chicken skeletal muscle troponin C in the
10094 two-calcium state at 2-A resolution
10095 JOURNAL J. Biol. Chem. 263 (4), 1628-1647 (1988)
10096 PUBMED 3338985
10097 REFERENCE 10 (bases 1 to 772)
10098 AUTHORS Wilkinson,J.M.
10099 TITLE The amino acid sequence of troponin C from chicken skeletal muscle
10100 JOURNAL FEBS Lett. 70 (1), 254-256 (1976)
10101 PUBMED 992069
10102 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
10103 NCBI review. The reference sequence was derived from M19027.1.
10104 On Aug 31, 2012 this sequence version replaced gi:45382066.
10105
10106 Publication Note: This RefSeq record includes a subset of the
10107 publications that are available for this gene. Please see the Gene
10108 record to access additional publications.
10109
10110 ##Evidence-Data-START##
10111 Transcript exon combination :: M19027.1, BU217608.1 [ECO:0000332]
10112 RNAseq introns :: single sample supports all introns
10113 SAMEA2201369, SAMEA2201373
10114 [ECO:0000348]
10115 ##Evidence-Data-END##
10116 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10117 1-772 M19027.1 5-776
10118 FEATURES Location/Qualifiers
10119 source 1..772
10120 /organism="Gallus gallus"
10121 /mol_type="mRNA"
10122 /db_xref="taxon:9031"
10123 /chromosome="20"
10124 /map="20"
10125 gene 1..772
10126 /gene="TNNC2"
10127 /note="troponin C2, fast skeletal type"
10128 /db_xref="CGNC:49802"
10129 /db_xref="GeneID:396434"
10130 CDS 39..530
10131 /gene="TNNC2"
10132 /note="troponin C (TNC); troponin C type 2 (fast)"
10133 /codon_start=1
10134 /product="troponin C, skeletal muscle"
10135 /protein_id="NP_990781.1"
10136 /db_xref="CGNC:49802"
10137 /db_xref="GeneID:396434"
10138 /translation="MASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELG
10139 TVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANC
10140 FRIFDKNADGFIDIEELGEILRATGEHVIEEDIEDLMKDSDKNNDGRIDFDEFLKMME
10141 GVQ"
10142 ORIGIN
10143 1 aggaagaggt gactccctgc gggaggagag cagcaaagat ggcgtcaatg acggaccagc
10144 61 aggcggaggc ccgcgccttc ctcagcgagg agatgattgc tgagttcaaa gctgcctttg
10145 121 acatgtttga tgcggacggt ggtggggaca tcagcaccaa ggagttgggc acggtgatga
10146 181 ggatgctggg ccagaacccc accaaagagg agctggatgc catcatcgag gaggtggacg
10147 241 aggatggcag cggcaccatc gacttcgagg agttcctggt gatgatggtg cgccagatga
10148 301 aagaggacgc caagggcaag tctgaggagg agctggccaa ctgcttccgc atcttcgaca
10149 361 agaacgctga tgggttcatc gacatcgagg agctgggtga gattctcagg gccactgggg
10150 421 agcacgtcat cgaggaggac atagaagacc tcatgaagga ttcagacaag aacaatgacg
10151 481 gccgcattga cttcgatgag ttcctgaaga tgatggaggg tgtgcagtaa gggatcagac
10152 541 attcctgggg ccggatgcgg cagccagccc tgctcctctg cccaggagcg gctccgctgc
10153 601 agcacctggc cttgctgccc acccgctgga gccctgcagc agctcgtgcc cctcggccgg
10154 661 cggctgagct tttccttgac tctgacagat gtggtttatg gatgaacctc attaaaaggg
10155 721 gaaaggctga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
10156 //
10157
10158 LOCUS NM_204650 384 bp mRNA linear VRT 04-JAN-2017
10159 DEFINITION Gallus gallus avian beta-defensin 3 (AvBD3), mRNA.
10160 ACCESSION NM_204650
10161 VERSION NM_204650.2
10162 KEYWORDS RefSeq.
10163 SOURCE Gallus gallus (chicken)
10164 ORGANISM Gallus gallus
10165 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10166 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10167 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10168 Phasianidae; Phasianinae; Gallus.
10169 REFERENCE 1 (bases 1 to 384)
10170 AUTHORS Cuperus T, Coorens M, van Dijk A and Haagsman HP.
10171 TITLE Avian host defense peptides
10172 JOURNAL Dev. Comp. Immunol. 41 (3), 352-369 (2013)
10173 PUBMED 23644014
10174 REMARK Review article
10175 REFERENCE 2 (bases 1 to 384)
10176 AUTHORS Sonoda Y, Abdel Mageed AM, Isobe N and Yoshimura Y.
10177 TITLE Induction of avian beta-defensins by CpG oligodeoxynucleotides and
10178 proinflammatory cytokines in hen vaginal cells in vitro
10179 JOURNAL Reproduction 145 (6), 621-631 (2013)
10180 PUBMED 23625580
10181 REMARK GeneRIF: Data suggest that DEFB1 and DEFB3 are involved in
10182 mechanisms by which the vaginal mucosa forms a more efficient
10183 defense system against bacterial infection; proinflammatory
10184 cytokines induce DEFB1 and DEFB3 in vagina mucosa cells.
10185 Publication Status: Online-Only
10186 REFERENCE 3 (bases 1 to 384)
10187 AUTHORS Zhang HH, Yang XM, Xie QM, Ma JY, Luo YN, Cao YC, Chen F and Bi YZ.
10188 TITLE The potent adjuvant effects of chicken beta-defensin-1 when
10189 genetically fused with infectious bursal disease virus VP2 gene
10190 JOURNAL Vet. Immunol. Immunopathol. 136 (1-2), 92-97 (2010)
10191 PUBMED 20334934
10192 REMARK GeneRIF: potent adjuvant effects of beta-defensin-1 when
10193 genetically fused with infectious bursal disease virus VP2 gene
10194 REFERENCE 4 (bases 1 to 384)
10195 AUTHORS Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
10196 Lalmanach AC.
10197 TITLE Differential modulation of beta-defensin gene expression by
10198 Salmonella Enteritidis in intestinal epithelial cells from
10199 resistant and susceptible chicken inbred lines
10200 JOURNAL Dev. Comp. Immunol. 33 (9), 959-966 (2009)
10201 PUBMED 19539093
10202 REMARK GeneRIF: intestinal epithelium express beta-defensin antimicrobial
10203 peptides that may play a role in immunoprotection against
10204 Salmonella Enteritidis.
10205 REFERENCE 5 (bases 1 to 384)
10206 AUTHORS Shimizu M, Watanabe Y, Isobe N and Yoshimura Y.
10207 TITLE Expression of avian beta-defensin 3, an antimicrobial peptide, by
10208 sperm in the male reproductive organs and oviduct in chickens: an
10209 immunohistochemical study
10210 JOURNAL Poult. Sci. 87 (12), 2653-2659 (2008)
10211 PUBMED 19038823
10212 REMARK GeneRIF: AvBD-3 is synthesized by late stage of spermatids in the
10213 testis, and this molecule is retained by the sperm during the
10214 passage of male reproductive tract, and even in the sperm storage
10215 tubules of oviduct.
10216 REFERENCE 6 (bases 1 to 384)
10217 AUTHORS Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
10218 Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
10219 Lehrer,R.I.
10220 TITLE Avian beta-defensin nomenclature: a community proposed update
10221 JOURNAL Immunol. Lett. 110 (1), 86-89 (2007)
10222 PUBMED 17467809
10223 REFERENCE 7 (bases 1 to 384)
10224 AUTHORS Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
10225 TITLE Effects of age, egg-laying activity, and Salmonella-inoculation on
10226 the expressions of gallinacin mRNA in the vagina of the hen oviduct
10227 JOURNAL J. Reprod. Dev. 52 (2), 211-218 (2006)
10228 PUBMED 16394622
10229 REMARK GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
10230 laying hens increases with age but decreases in the regressed
10231 oviduct during the non-laying phase, and may increase in response
10232 to Salmonella enteritidis (SE) and lipopolysaccharide
10233 REFERENCE 8 (bases 1 to 384)
10234 AUTHORS Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
10235 Zhang G.
10236 TITLE A genome-wide screen identifies a single beta-defensin gene cluster
10237 in the chicken: implications for the origin and evolution of
10238 mammalian defensins
10239 JOURNAL BMC Genomics 5 (1), 56 (2004)
10240 PUBMED 15310403
10241 REMARK GeneRIF: The chicken genome encodes only beta-defensins. The 13
10242 chicken beta-defensin genes are clustered densely within a 86-Kb
10243 distance on the chromosome 3q3.5-q3.7. The deduced peptides share
10244 the characteristic defensin motif.
10245 Publication Status: Online-Only
10246 REFERENCE 9 (bases 1 to 384)
10247 AUTHORS Zhao C, Nguyen T, Liu L, Sacco RE, Brogden KA and Lehrer RI.
10248 TITLE Gallinacin-3, an inducible epithelial beta-defensin in the chicken
10249 JOURNAL Infect. Immun. 69 (4), 2684-2691 (2001)
10250 PUBMED 11254635
10251 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
10252 NCBI review. The reference sequence was derived from AF181952.1.
10253 On Aug 31, 2012 this sequence version replaced gi:45382830.
10254
10255 ##Evidence-Data-START##
10256 Transcript exon combination :: AF181952.1, DQ677634.1 [ECO:0000332]
10257 RNAseq introns :: single sample supports all introns
10258 SAMEA2201357, SAMEA2201364
10259 [ECO:0000348]
10260 ##Evidence-Data-END##
10261 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10262 1-384 AF181952.1 4-387
10263 FEATURES Location/Qualifiers
10264 source 1..384
10265 /organism="Gallus gallus"
10266 /mol_type="mRNA"
10267 /db_xref="taxon:9031"
10268 /chromosome="3"
10269 /map="3"
10270 gene 1..384
10271 /gene="AvBD3"
10272 /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
10273 /note="avian beta-defensin 3"
10274 /db_xref="CGNC:12490"
10275 /db_xref="GeneID:395363"
10276 CDS 3..245
10277 /gene="AvBD3"
10278 /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
10279 /note="beta-defensin prepropeptide; gallinacin-3;
10280 antimicrobial peptide-3; defensin, beta 1; beta-defensin 3
10281 antimicrobial peptide"
10282 /codon_start=1
10283 /product="gallinacin-3 precursor"
10284 /protein_id="NP_989981.1"
10285 /db_xref="CGNC:12490"
10286 /db_xref="GeneID:395363"
10287 /translation="MRIVYLLIPFFLLFLQGAAGTATQCRIRGGFCRVGSCRFPHIAI
10288 GKCATFISCCGRAYEVDALNSVRTSPWLLAPGNNPH"
10289 sig_peptide 3..62
10290 /gene="AvBD3"
10291 /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
10292 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
10293 mat_peptide 69..242
10294 /gene="AvBD3"
10295 /gene_synonym="DEFB1; GAL 3; gal-3; GAL3"
10296 /product="Gallinacin-3"
10297 /experiment="experimental evidence, no additional details
10298 recorded"
10299 /note="propagated from UniProtKB/Swiss-Prot (Q9DG58.1)"
10300 ORIGIN
10301 1 ccatgcggat cgtgtacctg ctcatcccct tcttcctctt gtttctccag ggtgctgcag
10302 61 gaactgccac tcagtgcaga ataagaggag gattctgtcg tgttgggagc tgccgcttcc
10303 121 cacacatagc tattgggaaa tgtgcaacat ttatttcctg ctgtggaaga gcatatgagg
10304 181 ttgatgccct gaattctgtg aggacatcgc cgtggcttct cgctcctgga aacaaccccc
10305 241 attgacctct ccccttccca cctctgcagt ctcccatggt atgaccgtgg cagtggaagc
10306 301 tggagacacc tcgctgtggg cctgcagttg tttggccaga tgctgctttt ccctgctgaa
10307 361 taaaggcgtg cagtttggca ttgc
10308 //
10309
10310 LOCUS NM_205307 2182 bp mRNA linear VRT 04-JAN-2017
10311 DEFINITION Gallus gallus Raf-1 proto-oncogene, serine/threonine kinase (RAF1),
10312 mRNA.
10313 ACCESSION NM_205307
10314 VERSION NM_205307.2
10315 KEYWORDS RefSeq.
10316 SOURCE Gallus gallus (chicken)
10317 ORGANISM Gallus gallus
10318 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10319 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10320 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10321 Phasianidae; Phasianinae; Gallus.
10322 REFERENCE 1 (bases 1 to 2182)
10323 AUTHORS Magarinos M, Aburto MR, Sanchez-Calderon H, Munoz-Agudo C, Rapp UR
10324 and Varela-Nieto I.
10325 TITLE RAF kinase activity regulates neuroepithelial cell proliferation
10326 and neuronal progenitor cell differentiation during early inner ear
10327 development
10328 JOURNAL PLoS ONE 5 (12), E14435 (2010)
10329 PUBMED 21203386
10330 REMARK GeneRIF: RAF kinase activity is essential to establish the balance
10331 between cell proliferation and death in neuroepithelial otic
10332 precursors, and for otic neuron differentiation and axonal growth
10333 at the acoustic-vestibular ganglion
10334 Publication Status: Online-Only
10335 REFERENCE 2 (bases 1 to 2182)
10336 AUTHORS Brummer T, Stehelin D, Misawa Y and Reth M.
10337 TITLE A revised and complete map of the chicken c-mil/raf-1 locus
10338 JOURNAL Oncogene 23 (17), 3128-3131 (2004)
10339 PUBMED 14968114
10340 REMARK GeneRIF: a complete map of the c-mil/raf-1 gene and a revision of
10341 the exon numbers
10342 REFERENCE 3 (bases 1 to 2182)
10343 AUTHORS Brummer T, Shaw PE, Reth M and Misawa Y.
10344 TITLE Inducible gene deletion reveals different roles for B-Raf and Raf-1
10345 in B-cell antigen receptor signalling
10346 JOURNAL EMBO J. 21 (21), 5611-5622 (2002)
10347 PUBMED 12411479
10348 REMARK GeneRIF: Inducible gene deletion of the c-mil/raf-1 gene in chicken
10349 DT40 B cells revealed that, in addition to B-Raf, Raf-1 acts as an
10350 accessory ERK activator following engagement of the B cell antigen
10351 receptor.
10352 REFERENCE 4 (bases 1 to 2182)
10353 AUTHORS Dozier C, Denhez F, Henry C, Coll J, Begue A, Quatannens B, Saule S
10354 and Stehelin D.
10355 TITLE Alternative splicing of RNAs transcribed from the chicken c-mil
10356 gene
10357 JOURNAL Mol. Cell. Biol. 8 (4), 1835-1838 (1988)
10358 PUBMED 2837658
10359 REFERENCE 5 (bases 1 to 2182)
10360 AUTHORS Koenen M, Sippel AE, Trachmann C and Bister K.
10361 TITLE Primary structure of the chicken c-mil protein:identification of
10362 domains shared with or absent from the retroviral v-mil protein
10363 JOURNAL Oncogene 2 (2), 179-185 (1988)
10364 PUBMED 3285296
10365 REFERENCE 6 (bases 1 to 2182)
10366 AUTHORS Jansen,H.W. and Bister,K.
10367 TITLE Nucleotide sequence analysis of the chicken gene c-mil, the
10368 progenitor of the retroviral oncogene v-mil
10369 JOURNAL Virology 143 (2), 359-367 (1985)
10370 PUBMED 2998016
10371 REFERENCE 7 (bases 1 to 2182)
10372 AUTHORS Flordellis,C.S., Kan,N.C., Lautenberger,J.A., Samuel,K.P.,
10373 Garon,C.F. and Papas,T.S.
10374 TITLE Analysis of the cellular proto-oncogene mht/raf: relationship to
10375 the 5' sequences of v-mht in avian carcinoma virus MH2 and v-raf in
10376 murine sarcoma virus 3611
10377 JOURNAL Virology 141 (2), 267-274 (1985)
10378 PUBMED 3002017
10379 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
10380 NCBI review. The reference sequence was derived from X07017.1.
10381 On Aug 30, 2012 this sequence version replaced gi:45384313.
10382
10383 ##Evidence-Data-START##
10384 Transcript exon combination :: X07017.1 [ECO:0000332]
10385 RNAseq introns :: mixed/partial sample support
10386 SAMEA2201357, SAMEA2201358
10387 [ECO:0000350]
10388 ##Evidence-Data-END##
10389 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10390 1-2182 X07017.1 3-2184
10391 FEATURES Location/Qualifiers
10392 source 1..2182
10393 /organism="Gallus gallus"
10394 /mol_type="mRNA"
10395 /db_xref="taxon:9031"
10396 /chromosome="12"
10397 /map="12"
10398 gene 1..2182
10399 /gene="RAF1"
10400 /note="Raf-1 proto-oncogene, serine/threonine kinase"
10401 /db_xref="CGNC:3714"
10402 /db_xref="GeneID:396245"
10403 misc_feature 41..43
10404 /gene="RAF1"
10405 /note="upstream in-frame stop codon"
10406 CDS 71..2014
10407 /gene="RAF1"
10408 /EC_number="2.7.11.1"
10409 /note="c-mil protein; C-RAF; MIL proto-oncogene
10410 serine/threonine-protein kinase; v-raf-1 murine leukemia
10411 viral oncogene homolog 1"
10412 /codon_start=1
10413 /product="RAF proto-oncogene serine/threonine-protein
10414 kinase"
10415 /protein_id="NP_990638.1"
10416 /db_xref="CGNC:3714"
10417 /db_xref="GeneID:396245"
10418 /translation="MEHIQGAWKTISNGFGLKDSVFDGPNCISPTIVQQFGYQRRASD
10419 DGKISDTSKTSNTIRVFLPNKQRTVVNVRNGMTLHDCLMKALKVRGLQPECCAVFRLV
10420 TEPKGKKVRLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLL
10421 NGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSNISDSGVPALPPLTMRRMR
10422 ESVSRIPVSSQHRYSTPHVFTFNTSNPSSEGTLSQRQRSTSTPNVHMVSTTMPVDSRI
10423 IEDAIRNHSESASPSALSGSPNNMSPTGWSQPKTPVPAQRERAPGTNTQEKNKIRPRG
10424 QRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRN
10425 EVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIAR
10426 QTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGS
10427 ILWMAPEVIRMQDSNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYA
10428 SPDLSKLYKNCPKAMKRLVADCLKKVREERPLFPQILSSIELLQHSLPKINRSASEPS
10429 LHRASHTEDINSCTLTSTRLPVF"
10430 misc_feature 197..199
10431 /gene="RAF1"
10432 /experiment="experimental evidence, no additional details
10433 recorded"
10434 /note="Phosphoserine. {ECO:0000250}; propagated from
10435 UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
10436 misc_feature 845..847
10437 /gene="RAF1"
10438 /experiment="experimental evidence, no additional details
10439 recorded"
10440 /note="Phosphoserine. {ECO:0000250}; propagated from
10441 UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
10442 misc_feature 872..874
10443 /gene="RAF1"
10444 /experiment="experimental evidence, no additional details
10445 recorded"
10446 /note="Phosphothreonine, by autocatalysis. {ECO:0000250};
10447 propagated from UniProtKB/Swiss-Prot (P05625.1);
10448 phosphorylation site"
10449 misc_feature 1082..1084
10450 /gene="RAF1"
10451 /experiment="experimental evidence, no additional details
10452 recorded"
10453 /note="Phosphoserine. {ECO:0000250}; propagated from
10454 UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
10455 misc_feature 1565..1567
10456 /gene="RAF1"
10457 /experiment="experimental evidence, no additional details
10458 recorded"
10459 /note="Phosphoserine. {ECO:0000250}; propagated from
10460 UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
10461 misc_feature 1931..1933
10462 /gene="RAF1"
10463 /experiment="experimental evidence, no additional details
10464 recorded"
10465 /note="Phosphoserine. {ECO:0000250}; propagated from
10466 UniProtKB/Swiss-Prot (P05625.1); phosphorylation site"
10467 ORIGIN
10468 1 catagatgat gcacttcatc attttgtcat aggacttcac tgacataaag gaaaacgaaa
10469 61 gactgcatcc atggagcaca ttcagggagc ttggaagact atcagtaatg gttttggact
10470 121 caaggattct gtctttgatg gcccaaactg catttcaccg accattgtcc agcagtttgg
10471 181 ttatcagcgc cgagcatctg atgatggcaa gatatcagat acttccaaaa ccagtaatac
10472 241 cattcgagtt ttcttgccca acaagcaacg tacagtggta aatgtgcgaa atgggatgac
10473 301 cttacatgat tgtctcatga aggcacttaa agtaagaggt ctgcagccag aatgctgtgc
10474 361 agtttttcgt cttgttactg aaccaaaagg taaaaaagtg cgtttggatt ggaacactga
10475 421 tgctgcctcc ttgattggtg aggaactgca ggtggacttt cttgatcacg ttccgctcac
10476 481 tacacacaat tttgctcgga agacatttct aaagcttgct ttctgtgaca tctgccagaa
10477 541 gttcctccta aatgggtttc ggtgtcagac gtgtggttat aaattccacg agcactgcag
10478 601 cactaaagtt ccaaccatgt gcgtcgactg gagcaatatc aggcaactct tattgttccc
10479 661 aaattcaaat atcagtgaca gtggtgtccc tgcactacct cccttgacaa tgagacggat
10480 721 gcgggagtct gtctcccgga tacctgttag ctcccagcac aggtattcta cacctcatgt
10481 781 ctttacattc aacacatcaa atccttcctc tgagggcacc ctttcccaaa gacagcgatc
10482 841 tacatccaca ccaaatgtcc acatggttag cactacaatg ccagtagaca gccggataat
10483 901 tgaggatgca attcgaaacc atagtgaatc agcttcaccc tccgctctgt ctgggagtcc
10484 961 taacaatatg agcccgactg gctggtctca gcccaaaacg ccagtcccag cccagaggga
10485 1021 gagagccccc ggaacgaata cacaggagaa aaataaaatt aggcctcgtg gacaaagaga
10486 1081 ttctagttat tactgggaaa tagaagcaag cgaagtcatg ctttctacca gaatagggtc
10487 1141 aggttctttt ggaactgttt acaaaggcaa atggcatggg gatgtagcag tgaaaatatt
10488 1201 aaaggttgta gatccaaccc cagaacagtt tcaggctttc agaaacgaag tggctgtatt
10489 1261 aaggaagacc cggcatgtta atattttgct cttcatgggc tacatgacta aagataacct
10490 1321 ggccattgtc acacagtggt gtgaaggcag cagtctgtat aaacacctgc acgttcaaga
10491 1381 gaccaagttc caaatgttcc agctcattga cattgctcgg cagacagcgc agggaatgga
10492 1441 ctatttgcat gcaaagaata tcatccacag agacatgaaa tccaataata tatttcttca
10493 1501 tgaaggcctc acagtgaaaa taggagactt tggtctagca actgtaaaat ccaggtggag
10494 1561 tggatcgcag caggtggagc aacccactgg ttccattttg tggatggcac cagaagtgat
10495 1621 acggatgcaa gacagcaatc cgttcagttt tcagtcagat gtctactcct atggaatagt
10496 1681 attgtatgag ctaatgacag gagagctgcc atactcccac ataaacaacc gcgaccagat
10497 1741 tattttcatg gttggtcgag gatatgcttc tccagacctc agcaagttgt acaagaactg
10498 1801 ccccaaagca atgaagaggc tcgtagcaga ttgtttgaag aaagttaggg aagaaagacc
10499 1861 cttgtttccg caaatactgt cttccattga attgctgcaa cattctttac ccaaaatcaa
10500 1921 ccggagtgct tccgaaccat ctctgcaccg cgcatcccat acagaggaca taaattcttg
10501 1981 cacgttaaca tccacaagac tgcctgtttt ttagaattgt gctccccttc ccttaatctc
10502 2041 tccagtgatg ggaaaggaac agaagtaaga gaagttgtgc ttttaatgcc tcagtgtaca
10503 2101 ggatcagtgc cagcaggatc atccgcatcc ccgtttaaga acaagctgct aaggatgttt
10504 2161 gcagttctta ccctgcaggg ac
10505 //
10506
10507 LOCUS NM_001257373 1096 bp mRNA linear VRT 04-JAN-2017
10508 DEFINITION Gallus gallus mitochondrial ribosome associated GTPase 1 (MTG1),
10509 mRNA.
10510 ACCESSION NM_001257373 XM_003641467
10511 VERSION NM_001257373.1
10512 KEYWORDS RefSeq.
10513 SOURCE Gallus gallus (chicken)
10514 ORGANISM Gallus gallus
10515 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10516 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10517 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10518 Phasianidae; Phasianinae; Gallus.
10519 REFERENCE 1 (bases 1 to 1096)
10520 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
10521 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
10522 TITLE A comprehensive collection of chicken cDNAs
10523 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
10524 PUBMED 12445392
10525 COMMENT VALIDATED REFSEQ: This record has undergone validation or
10526 preliminary review. The reference sequence was derived from
10527 BU380401.1, CR389870.1, BU362947.1 and BU282820.1.
10528 On Apr 11, 2012 this sequence version replaced gi:363735154.
10529
10530 Sequence Note: This RefSeq record was created from transcript data
10531 from different strains because no single transcript from the same
10532 strain was available for the full length of the gene. The extent of
10533 this transcript is supported by transcript alignments and
10534 orthologous data.
10535
10536 ##Evidence-Data-START##
10537 Transcript exon combination :: CR389870.1, BU259549.1 [ECO:0000332]
10538 RNAseq introns :: single sample supports all introns
10539 SAMEA2201376 [ECO:0000348]
10540 ##Evidence-Data-END##
10541
10542 ##RefSeq-Attributes-START##
10543 gene product(s) localized to mito. :: inferred from homology
10544 ##RefSeq-Attributes-END##
10545 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10546 1-14 BU380401.1 1-14
10547 15-55 CR389870.1 14-54
10548 56-56 BU362947.1 54-54
10549 57-509 CR389870.1 56-508
10550 510-510 BU362947.1 508-508
10551 511-1089 CR389870.1 510-1088
10552 1090-1096 BU282820.1 756-762
10553 FEATURES Location/Qualifiers
10554 source 1..1096
10555 /organism="Gallus gallus"
10556 /mol_type="mRNA"
10557 /db_xref="taxon:9031"
10558 /chromosome="6"
10559 /map="6"
10560 /breed="Leghorn"
10561 gene 1..1096
10562 /gene="MTG1"
10563 /note="mitochondrial ribosome associated GTPase 1"
10564 /db_xref="CGNC:59226"
10565 /db_xref="GeneID:791224"
10566 CDS 16..1005
10567 /gene="MTG1"
10568 /note="mitochondrial GTPase 1 homolog"
10569 /codon_start=1
10570 /product="mitochondrial ribosome-associated GTPase 1"
10571 /protein_id="NP_001244302.1"
10572 /db_xref="CGNC:59226"
10573 /db_xref="GeneID:791224"
10574 /translation="MRRWVGALRAAATVASGPCLESGGFRTRFDFGSRDAASWFPGHM
10575 AKGLRQMRASLRRADCLVEVHDARIPLSGRNPVLQEVLGIRPHLLVLNKMDLADPRQQ
10576 SRVLEQLRQQGCSYVVFTDCQRDSNVKKIVPLVAKLVNSSPRYHRAESTEYSIMVIGV
10577 PNVGKSSLINSLRRLHLKKGKATAVGGEPGVTKAVLTRIQVCETPLVYLVDTPGVLPP
10578 KLADVETGMKLALCGAIRDHLVGEDIMADYLLYVLNQQQQFGYMELYGLPEASDNIRH
10579 VLKYVAVALGKTQKVKVLTGTGNVNMTMLDYSAAAYEFLRAFRAGRLGRLTLD"
10580 ORIGIN
10581 1 cgcaccggaa gtgtcatgag gcgctgggtg ggagcgctgc gggccgccgc caccgtcgcc
10582 61 tcagggccgt gcttggagtc cggcgggttc cgcacccgct tcgatttcgg cagccgcgat
10583 121 gcggcctcct ggttccctgg gcacatggcc aaagggctgc ggcagatgcg ggcctccctg
10584 181 cggcgtgccg actgcctcgt cgaagtgcac gacgctcgca tcccactgtc aggccgtaat
10585 241 cctgtgctgc aggaggtgct gggcatccgc ccgcatcttt tggtgctgaa caagatggac
10586 301 ctggctgacc cacgccagca gtcaagagtc ctggagcaac tgaggcagca gggatgctcg
10587 361 tatgttgtct tcactgattg tcagcgggac agcaatgtca agaagatcgt gcccctggtt
10588 421 gccaagctag tcaacagcag cccacgctac cacagggctg agagtactga gtacagcatc
10589 481 atggtgatcg gtgtgcccaa cgtaggcaaa tcatcgctta tcaactcttt gcggaggttg
10590 541 cacctcaaaa agggaaaagc cacagcagtg ggcggtgagc caggtgtcac caaggcggtg
10591 601 ctgacccgga tccaggtgtg cgagactccc ctggtgtatc tggtggacac gccaggtgtg
10592 661 ctgcccccaa agttggccga tgtggagacg gggatgaagc tggcattgtg tggagcgatc
10593 721 cgtgaccact tggtgggtga ggacatcatg gctgactacc tgctgtatgt actgaaccag
10594 781 cagcagcagt ttgggtacat ggagctctat ggactgcccg aggccagtga caacatcagg
10595 841 catgtgctga agtatgttgc ggtcgccctg ggcaagacgc agaaggtgaa ggtgctgaca
10596 901 ggcacaggga atgtcaacat gacgatgctc gactactcgg ctgctgccta tgagttcctg
10597 961 cgggccttcc gtgctgggcg cctgggtaga ctgacactgg actgagggtc ctggagtaga
10598 1021 gcaggacatc ccacatctcc gccagctcca ggtggtggtt tggtgtgatt aaagctgctt
10599 1081 tgttcctgga tgggtc
10600 //
10601
10602 LOCUS NM_001128828 6982 bp mRNA linear VRT 04-JAN-2017
10603 DEFINITION Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript
10604 variant 1, mRNA.
10605 ACCESSION NM_001128828 XM_425812
10606 VERSION NM_001128828.2
10607 KEYWORDS RefSeq.
10608 SOURCE Gallus gallus (chicken)
10609 ORGANISM Gallus gallus
10610 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10611 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10612 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10613 Phasianidae; Phasianinae; Gallus.
10614 REFERENCE 1 (bases 1 to 6982)
10615 AUTHORS Nakata D and Troy FA 2nd.
10616 TITLE Degree of polymerization (DP) of polysialic acid (polySia) on
10617 neural cell adhesion molecules (N-CAMS): development and
10618 application of a new strategy to accurately determine the DP of
10619 polySia chains on N-CAMS
10620 JOURNAL J. Biol. Chem. 280 (46), 38305-38316 (2005)
10621 PUBMED 16172115
10622 REMARK GeneRIF: analysis of polymerization of polysialic acid on neural
10623 cell adhesion molecules
10624 REFERENCE 2 (bases 1 to 6982)
10625 AUTHORS Milev P, Maurel P, Haring M, Margolis RK and Margolis RU.
10626 TITLE TAG-1/axonin-1 is a high-affinity ligand of neurocan,
10627 phosphacan/protein-tyrosine phosphatase-zeta/beta, and N-CAM
10628 JOURNAL J. Biol. Chem. 271 (26), 15716-15723 (1996)
10629 PUBMED 8663515
10630 REFERENCE 3 (bases 1 to 6982)
10631 AUTHORS Colwell G, Li B, Forrest D and Brackenbury R.
10632 TITLE Conserved regulatory elements in the promoter region of the N-CAM
10633 gene
10634 JOURNAL Genomics 14 (4), 875-882 (1992)
10635 PUBMED 1478668
10636 REFERENCE 4 (bases 1 to 6982)
10637 AUTHORS Rao Y, Wu XF, Gariepy J, Rutishauser U and Siu CH.
10638 TITLE Identification of a peptide sequence involved in homophilic binding
10639 in the neural cell adhesion molecule NCAM
10640 JOURNAL J. Cell Biol. 118 (4), 937-949 (1992)
10641 PUBMED 1380002
10642 REFERENCE 5 (bases 1 to 6982)
10643 AUTHORS Cunningham,B.A., Hemperly,J.J., Murray,B.A., Prediger,E.A.,
10644 Brackenbury,R. and Edelman,G.M.
10645 TITLE Neural cell adhesion molecule: structure, immunoglobulin-like
10646 domains, cell surface modulation, and alternative RNA splicing
10647 JOURNAL Science 236 (4803), 799-806 (1987)
10648 PUBMED 3576199
10649 REFERENCE 6 (bases 1 to 6982)
10650 AUTHORS Hemperly,J.J., Edelman,G.M. and Cunningham,B.A.
10651 TITLE cDNA clones of the neural cell adhesion molecule (N-CAM) lacking a
10652 membrane-spanning region consistent with evidence for membrane
10653 attachment via a phosphatidylinositol intermediate
10654 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83 (24), 9822-9826 (1986)
10655 PUBMED 3467341
10656 REMARK Erratum:[Proc Natl Acad Sci U S A 1987 May;84(9):3069]
10657 REFERENCE 7 (bases 1 to 6982)
10658 AUTHORS Cole,G.J., Loewy,A., Cross,N.V., Akeson,R. and Glaser,L.
10659 TITLE Topographic localization of the heparin-binding domain of the
10660 neural cell adhesion molecule N-CAM
10661 JOURNAL J. Cell Biol. 103 (5), 1739-1744 (1986)
10662 PUBMED 2430978
10663 REFERENCE 8 (bases 1 to 6982)
10664 AUTHORS Murray,B.A., Owens,G.C., Prediger,E.A., Crossin,K.L.,
10665 Cunningham,B.A. and Edelman,G.M.
10666 TITLE Cell surface modulation of the neural cell adhesion molecule
10667 resulting from alternative mRNA splicing in a tissue-specific
10668 developmental sequence
10669 JOURNAL J. Cell Biol. 103 (4), 1431-1439 (1986)
10670 PUBMED 3771645
10671 REFERENCE 9 (bases 1 to 6982)
10672 AUTHORS Hemperly,J.J., Murray,B.A., Edelman,G.M. and Cunningham,B.A.
10673 TITLE Sequence of a cDNA clone encoding the polysialic acid-rich and
10674 cytoplasmic domains of the neural cell adhesion molecule N-CAM
10675 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83 (9), 3037-3041 (1986)
10676 PUBMED 3458261
10677 REMARK Erratum:[Proc Natl Acad Sci U S A 1988 Mar;85(6):2008]
10678 COMMENT VALIDATED REFSEQ: This record has undergone validation or
10679 preliminary review. The reference sequence was derived from
10680 AADN04000117.1.
10681 On Apr 6, 2012 this sequence version replaced gi:193220937.
10682
10683 Transcript Variant: This variant (1) represents the longer
10684 transcript and encodes the longer protein (isoform 1).
10685
10686 Sequence Note: The RefSeq transcript and protein were derived from
10687 genomic sequence to make the sequence consistent with the reference
10688 genome assembly. The genomic coordinates used for the transcript
10689 record were based on alignments.
10690
10691 ##Evidence-Data-START##
10692 RNAseq introns :: mixed/partial sample support SAMEA2201357,
10693 SAMEA2201358 [ECO:0000350]
10694 ##Evidence-Data-END##
10695 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10696 1-242 AADN04000117.1 1215672-1215913 c
10697 243-317 AADN04000117.1 1179523-1179597 c
10698 318-536 AADN04000117.1 1177762-1177980 c
10699 537-680 AADN04000117.1 1177055-1177198 c
10700 681-818 AADN04000117.1 1176052-1176189 c
10701 819-936 AADN04000117.1 1175462-1175579 c
10702 937-1106 AADN04000117.1 1174938-1175107 c
10703 1107-1249 AADN04000117.1 1174679-1174821 c
10704 1250-1400 AADN04000117.1 1167323-1167473 c
10705 1401-1585 AADN04000117.1 1166565-1166749 c
10706 1586-1682 AADN04000117.1 1166116-1166212 c
10707 1683-1853 AADN04000117.1 1165618-1165788 c
10708 1854-1985 AADN04000117.1 1165055-1165186 c
10709 1986-2110 AADN04000117.1 1153742-1153866 c
10710 2111-2291 AADN04000117.1 1152847-1153027 c
10711 2292-2499 AADN04000117.1 1143238-1143445 c
10712 2500-2616 AADN04000117.1 1142932-1143048 c
10713 2617-3399 AADN04000117.1 1140940-1141722 c
10714 3400-6982 AADN04000117.1 1135018-1138600 c
10715 FEATURES Location/Qualifiers
10716 source 1..6982
10717 /organism="Gallus gallus"
10718 /mol_type="mRNA"
10719 /db_xref="taxon:9031"
10720 /chromosome="24"
10721 /map="24"
10722 /breed="Red Jungle Fowl"
10723 gene 1..6982
10724 /gene="NCAM1"
10725 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10726 /note="neural cell adhesion molecule 1"
10727 /db_xref="CGNC:5910"
10728 /db_xref="GeneID:428253"
10729 CDS 191..3520
10730 /gene="NCAM1"
10731 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10732 /EC_number="2.7.11.1"
10733 /note="isoform 1 precursor is encoded by transcript
10734 variant 1"
10735 /codon_start=1
10736 /product="neural cell adhesion molecule 1 isoform 1
10737 precursor"
10738 /protein_id="NP_001122300.2"
10739 /db_xref="CGNC:5910"
10740 /db_xref="GeneID:428253"
10741 /translation="MLPAAALPWTLFFLGAAASLQVDIVPSQGEISVGESKFFLCQVA
10742 GEAKYKDISWFSPNGEKLTPNQQRISVVRNDDFSSTLTIYNANIDDAGIYKCVVSSVE
10743 EGDSEATVNVKIFQKLMFKNAPTPQEFKEGDDAVIVCDVVSSLPPTIIWKHKGRDVIL
10744 KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPSVRARQ
10745 STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKK
10746 VDKSDEAEYICIAENKAGEQDATIHLKVFAKPKITYVENKTAMELEDQITLTCEASGD
10747 PIPSITWKTSTRNISNEEKTLDGRIVVRSHARVSSLTLKEIQYTDAGEYVCTASNTIG
10748 QDSQAMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAVISWFRDGQLLPSSNY
10749 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESSEFILVQADTPSSPSIDRV
10750 EPYSSTARVEFDEPEATGGVPILKYKAEWRALGEGEWHSRLYDAKEANVEGTITISGL
10751 KPETTYSVRLSAVNGKGVGEISLPSDFKTQPVREPSAPKLEGQMGEDGNSIKVNVIKQ
10752 DDGGSPIRHYLIKYKAKHSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVIAENQQGK
10753 SKPAHYAFRTSAQPTVIPASTSPTSGLGTAAIVGILIVIFVLLLVAVDVTCYFLNKCG
10754 LLMCIAVNLCGKSGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHTE
10755 PNETTPLTEPEHTADTAATVEDMLPSVTTGTTNSDTITETFATAQNSPTSETTTLTSS
10756 IAPPATAIPDSNAMSPGQATPAKAGASPVSPPPPSSTPKVAPLVDLSDTPSSAPATNN
10757 LSSSVLSNQGAVLSPSTVANMAETSKAAAGNKSAAPTPANLTSPPAPSEPKQEVSSTK
10758 SPEKEAAQPSTVKSPTETAKNPSNPKSEAASGGTTNPSQNEDFKMDEGTFKTPDIDLA
10759 KDVFAALGTTTPASVASGQARELASSTADSSVPAAPAKTEKTPVEDKSEVQATETKTP
10760 PAEVKTVPNEATQTNENESKA"
10761 sig_peptide 191..247
10762 /gene="NCAM1"
10763 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10764 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
10765 misc_feature 644..658
10766 /gene="NCAM1"
10767 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10768 /experiment="experimental evidence, no additional details
10769 recorded"
10770 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
10771 Region: Heparin-binding. {ECO:0000255}"
10772 misc_feature 671..685
10773 /gene="NCAM1"
10774 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10775 /experiment="experimental evidence, no additional details
10776 recorded"
10777 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
10778 Region: Heparin-binding. {ECO:0000255}"
10779 misc_feature 2324..2377
10780 /gene="NCAM1"
10781 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
10782 /experiment="experimental evidence, no additional details
10783 recorded"
10784 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
10785 transmembrane region"
10786 ORIGIN
10787 1 gtcacggcgg cggcgccggg aggcggccgg ggcgcagcgg gcggagcggg gacacgcgcg
10788 61 gagcggagcg gagcggcgcg aaggggacgc ggggcaaaaa cgggaagatc catccggagg
10789 121 gccgcgtggt gctccgcccg cacggaacgg ctatttcgga gcggcccctc tcgccccccc
10790 181 gccggctgcg atgctgcccg ccgccgcgct gccctggacg ttgttttttc tcggagccgc
10791 241 agcctctcta caagtggata ttgttccaag tcagggagag atcagcgttg gagaatccaa
10792 301 gttcttctta tgtcaagtgg caggggaagc caaatacaaa gacatttcct ggttttcccc
10793 361 taacggtgag aagctgacgc ccaaccaaca gcgcatctca gtggtgcgaa atgatgactt
10794 421 ctcctccacc ctcaccatct acaacgccaa cattgatgat gctggcatct ataaatgtgt
10795 481 tgtcagcagc gtggaggagg gagactctga agccaccgtc aatgtgaaaa ttttccaaaa
10796 541 gctcatgttc aagaatgccc ccactcctca ggaattcaag gaaggggatg atgctgtgat
10797 601 tgtgtgtgat gtggtcagct cgctgcctcc taccatcatc tggaaacaca aaggcaggga
10798 661 tgtcatccta aaaaaagatg ttcggtttat agtgctgtcc aacaactacc tgcagatccg
10799 721 gggaatcaag aaaacagatg aagggacgta ccgctgtgag ggccgcatcc tggctcgtgg
10800 781 ggagatcaac ttcaaagata ttcaggtcat tgtaaatgta cctccttctg tgcgtgccag
10801 841 gcagagcact atgaacgcca ctgccaacct cagccagtct gtcaccttag catgtgatgc
10802 901 tgatggcttt cctgagccaa ccatgacgtg gacaaaggat ggagagccaa tagagcagga
10803 961 ggataacgaa gagaaataca gttttaacta tgatgggtcc gagctgatca tcaagaaggt
10804 1021 ggataagagt gacgaagcag agtacatctg catcgctgag aacaaggctg gcgagcagga
10805 1081 tgccaccatt catctcaaag tctttgcaaa acccaaaatc acatatgtgg agaataaaac
10806 1141 agctatggag ctggaggatc agatcacact gacctgtgag gcctctgggg acccaatccc
10807 1201 ttccatcacg tggaaaactt ccacccggaa catcagcaat gaagagaaga ccctggatgg
10808 1261 gcgcatcgtg gtgcgcagcc acgcgcgggt atcgtccctg actctcaaag aaatccagta
10809 1321 cacagacgcc ggagagtacg tgtgcacggc cagcaacacc atcgggcagg actcacaggc
10810 1381 catgtacctc gaagtgcagt atgctcccaa gcttcagggc cctgtggctg tctatacctg
10811 1441 ggaagggaat caagtgaaca tcacctgtga ggtatttgct tatcccagtg ctgtcatctc
10812 1501 ctggttccga gatggacagc tgcttcccag ctcaaactac agcaacatca agatctacaa
10813 1561 cactccatca gcaagctacc tggaggtgac accagactct gaaaatgact ttggcaacta
10814 1621 caactgcact gctgtgaacc gcattggcca ggaatcctca gagttcattc ttgtgcaggc
10815 1681 ggatactccg tcctctcctt ctattgacag agtggagccc tactctagta ctgcccgtgt
10816 1741 ggagttcgat gagcctgaag ctactggtgg ggtgcccatc ctcaaataca aagcagagtg
10817 1801 gagagcactg ggtgaaggag aatggcactc aagattgtat gatgcaaaag aggcaaatgt
10818 1861 ggagggcacg atcactatca gtggcctgaa acctgagaca acctactcag tgagactgtc
10819 1921 tgcagtcaat ggcaagggtg tgggtgagat tagcctgcca tccgacttca agacacagcc
10820 1981 agttcgggaa cccagtgcac ccaaactgga agggcagatg ggagaagacg gaaactccat
10821 2041 caaagtgaac gttatcaagc aggatgatgg tggctcccca atcaggcatt acctgatcaa
10822 2101 atacaaagct aaacattcct cagaatggaa accagagatc agactgcctt ctggcagtga
10823 2161 ccacgtcatg ctcaagtctc tggactggaa tgcagagtat gaggtttatg tgatagctga
10824 2221 aaaccagcag gggaagtcca aacccgctca ctacgctttc cggacatctg ctcagcctac
10825 2281 tgtcatccca gccagcacta gccctacgtc aggcctgggg actgctgcca tcgtaggcat
10826 2341 tctcattgtt atctttgtgc tgctcctggt ggctgtggac gtcacctgct acttcctgaa
10827 2401 caaatgtggc ctgctcatgt gcattgctgt caacttatgt ggcaagtctg gaccaggagc
10828 2461 caagggcaaa gacatggagg agggcaaagc tgccttctcg aaagatgagt ccaaggagcc
10829 2521 tattgtggaa gtgcggactg aagaggagcg gacccccaac catgatgggg gaaaacacac
10830 2581 agagcccaac gagaccaccc cactaacaga accagagcac accgccgata ctgcagctac
10831 2641 tgttgaggac atgctgcctt ctgtaactac gggcaccact aactctgaca ctatcactga
10832 2701 aacttttgcc actgctcaga acagccccac gagcgagacc accaccctga cctccagtat
10833 2761 tgccccgcca gccacggcca ttcctgactc aaacgccatg tcgcctggcc aggctactcc
10834 2821 agccaaagcg ggagcctccc ctgtctctcc accaccaccc tcctctacgc ccaaagtggc
10835 2881 cccccttgtt gatctcagcg ataccccaag ctctgctcca gctactaata atttgtcttc
10836 2941 aagtgtcctg tccaaccaag gtgcagtgct gagccccagc actgttgcta acatggccga
10837 3001 gacctccaaa gcagcagctg gtaacaagtc agctgcccca acccctgcaa acctcactag
10838 3061 tcctccagct ccatcagagc ccaagcagga ggtctcaagc accaagagcc ccgagaaaga
10839 3121 agctgcgcag cccagtacag tgaagagccc aacagagaca gccaagaatc caagcaatcc
10840 3181 gaagagtgag gctgcttcag gcggcaccac aaacccctcc cagaatgagg actttaaaat
10841 3241 ggacgaaggg accttcaaga caccagacat tgatcttgca aaggatgttt ttgcagctct
10842 3301 tggcactact actcctgcca gtgtggctag tgggcaagct cgtgagcttg cttcttccac
10843 3361 tgcagacagc tctgtacctg ctgcacctgc aaagaccgag aaaaccccag tagaagacaa
10844 3421 atctgaagtg caagcaacgg aaactaagac acctccagca gaagtgaaga cggtccccaa
10845 3481 cgaagccaca caaacaaatg agaatgagag caaagcatga tcagcgacag atgaaaaacc
10846 3541 atggcagaac gacttcaccc aagcatttac aacacgaaac acaacacaca tctcattcct
10847 3601 ctagtgtctg ttgccttttt tttaaaaaac aaacaaacaa acaaaacaga aaatgcataa
10848 3661 atggggaggg gggggttctc tctttttttc tttttctttt tcttaagatt tttaggaagg
10849 3721 ttctatttgt tgtgtacttg cttttaaaaa gtaacacgtt ttaaaaacag ggttaaaccc
10850 3781 atcaccagat cgggggctca gctgtcccct ggtatgttca aacaagcaga attgcagaat
10851 3841 accacttaga gcatcgctga ggagctcaga gtcacccagt cgtagacgaa aggaaaaaaa
10852 3901 gagaaaagaa aaaagaagac cctgttcttt ccttggttag aatagtagat ttaaccactg
10853 3961 tactgcttgc ctgcttggta caggcggtac ttagtgaaca aagtccacaa tttattttta
10854 4021 tacttttcag tcgagtttga aatatgtaaa gcctcataaa taagttataa tttctgttca
10855 4081 ccttgtgttc agtatgcaaa gtgtcgtgag cattttgtgg ctgaattctg ttctcctcgt
10856 4141 tagacattga ttttggggtt tattattttt gttaggaaga atgccaaaat tgcagcttcg
10857 4201 ggggatgtat ttcaatttgc agtattcaga ctctacattt ctttaaattt tatgttaatt
10858 4261 tttgccaact tttgttctct ccagtgttta caattgacat ttttttaact tttgttgtgt
10859 4321 ttaaatgtat ttgtaaaata gctgcctttt ttttaaagta aatccagact ctagctacta
10860 4381 ggttagcagc atgcttgctt tgcaaaggga gacattttga aatatcgatg tttacagtag
10861 4441 tttccccctt tatctttttt aattattatt attattataa ttattattat tatttcttac
10862 4501 tggagtaaga aaaaagagta atgctggtct ttggtttgtt ttaggggggt ggggcgtggg
10863 4561 gaatattcca accacttgtc accaatcgag gtctgtatcc agcaatccac ataaacacac
10864 4621 ttcactttga acgagagagt tgctggagag agtttcctta tatacttaaa tttattaaga
10865 4681 gtgtaagtcc cttgctggac ctgggcctga atgcataaga aaaatatcat ctctgctttt
10866 4741 ttaggacatt cttctctttc cttcatggaa ccctcccaga gctttgagaa gcagaagagg
10867 4801 gattgtacag ttagggctgg gctggtcttg tctccactgt ttgactacat ccatttctct
10868 4861 gtagaatgtt gataactgcc atttcctttg accccagaaa ctgatttaaa agcaatgcct
10869 4921 ttccgcactt aaataaagtt tccttttgag gagtggtaac actaaaaaca gaacatcctg
10870 4981 ctctcatgtg ggtgatgttc atgagcagag ggtgcttggc agcatgcagg tgtccttact
10871 5041 cattgcaggg aagttggact agatgaccct taagggtccc ttccaaccca aacgattcta
10872 5101 tgactctcca taagacccct tctgcaaagt cagctccagc acattgtgtc tgataagtca
10873 5161 tccgtgtatg ctttgcatca tccaggccat gtatccatgg ctgagtgctt gggcatcagt
10874 5221 gccaacgctc ccattgatgt ccctgctctt ctcatcatgc ttttagcagt cagagaaagg
10875 5281 ggctgatgtc acacatgcgt tgttgtggtc gtcactggga gtcatggagt aacactgaga
10876 5341 cttcagggtg ggaagaagag aaggttgagc agcaggaagg cagaggaaga ccagcccatt
10877 5401 gtatagaggt gctccttctc tgggggtttt gctttgtttg tttttctttt attttccatt
10878 5461 cttttttttt ttttttttct actttagatc tgcaagcttg tgcactgtgg gtgcgtgact
10879 5521 tttagtgtga aacgtgtttt ttgtcatagt attgaaataa ttgaaaaaaa aaaaaagctt
10880 5581 caacatagtt tggatgtgga aggtgtagcg gataggtcag atttaaaata tatatattca
10881 5641 ggaaaaaaaa aaagagaaca acttctagga ggaacacaag cctttaaatg acaaacccga
10882 5701 gctgatgatg gcatcattgc atcgcgccat ggggacgagc agaagggtga tggggttggg
10883 5761 gagatcatgc ttggctcggg tgaactgagc cactatcgtt ggtgtgtcct tctgagtatg
10884 5821 cagtctttta cagtggcatc acatgatttc aaacagtgta aaacagtggt tttgtcattt
10885 5881 gctaagtgtg gggtttttgc attttttcct cagctcctgg ggatggaagt ggaggatggc
10886 5941 tggctatgca ggcacagaca ctcaggcaat accatcccag gcagaacagc agggcaggac
10887 6001 aggttcccac ttgagagcct tgtgtcagat tcagcccatg cttgacccat gacagcagcg
10888 6061 ttgatgtaag taaggcgaaa tttggtccgt ggtccctagg accttatata tcatgcctcc
10889 6121 ccgagcagca acaggagcaa acgctgctca gcgcagtgac ccggagtatg tccagtgcca
10890 6181 ctgatcagca cccattgggt ggcactgtgg tggctgtcac ccagactggt gtttctgcca
10891 6241 tgtaaggcca ccagcccagg gccccatcca gcacccggcc gtgtcacagt gcccggtacc
10892 6301 tgctgggttg tgtcctgtgg atggagcctc tgtgctgctc ccttagtgcc cctgtgacct
10893 6361 ccccatcccc agaaccctta gattaatttt ggagagtgtt tttatacttg cccttaatgg
10894 6421 agaataattt gttttaactt ataaatatcc cattcccaag gtagcttagg cttcattgct
10895 6481 tttatttaaa cctttgaaga gggaccaacc tgatgccgtt tgcgctgtat atgtttatat
10896 6541 atgtatccat gccatacata tatatatcta tatggcaact cagactgatc agcttctagt
10897 6601 tgtggagtga catttcatgc tgcaccatac gtaacgatga tgaggtaata gtgcatccag
10898 6661 ttgttcagct tttagagtgg aattttattt tcacactttt ctatggagcc ttcaaacccc
10899 6721 aggttttcac actaggctgt tttgatagtt gttctcagac ctccactgac atccttaccc
10900 6781 agcattccct acttttgggg gccttctatc ttgttaaaaa aacaaaaaaa caaaaaatct
10901 6841 ttttaccgag tgaaacatca gttccacctt tattcccatt ctcactggtg taaatactga
10902 6901 tactaactga ggattttgac tttgcattct gtcagaatac tgtgttcaaa taaaaattac
10903 6961 aaaaaaaaaa taccaacaaa aa
10904 //
10905
10906 LOCUS NM_001252284 2790 bp mRNA linear VRT 04-JAN-2017
10907 DEFINITION Gallus gallus myelin protein zero like 2 (MPZL2), mRNA.
10908 ACCESSION NM_001252284
10909 VERSION NM_001252284.1
10910 KEYWORDS RefSeq.
10911 SOURCE Gallus gallus (chicken)
10912 ORGANISM Gallus gallus
10913 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
10914 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
10915 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
10916 Phasianidae; Phasianinae; Gallus.
10917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
10918 NCBI review. The reference sequence was derived from
10919 AADN04000117.1.
10920
10921 Sequence Note: The RefSeq transcript and protein were derived from
10922 genomic sequence to make the sequence consistent with the reference
10923 genome assembly. The genomic coordinates used for the transcript
10924 record were based on alignments.
10925
10926 ##Evidence-Data-START##
10927 Transcript exon combination :: BU399092.1, BX932694.1 [ECO:0000332]
10928 RNAseq introns :: mixed/partial sample support
10929 SAMEA2201357, SAMEA2201358
10930 [ECO:0000350]
10931 ##Evidence-Data-END##
10932 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
10933 1-354 AADN04000117.1 800833-801186 c
10934 355-521 AADN04000117.1 798706-798872 c
10935 522-732 AADN04000117.1 797908-798118 c
10936 733-2790 AADN04000117.1 795605-797662 c
10937 FEATURES Location/Qualifiers
10938 source 1..2790
10939 /organism="Gallus gallus"
10940 /mol_type="mRNA"
10941 /db_xref="taxon:9031"
10942 /chromosome="24"
10943 /map="24"
10944 /breed="Red Jungle Fowl"
10945 gene 1..2790
10946 /gene="MPZL2"
10947 /gene_synonym="eva; EVA1"
10948 /note="myelin protein zero like 2"
10949 /db_xref="CGNC:51090"
10950 /db_xref="GeneID:419779"
10951 misc_feature 132..134
10952 /gene="MPZL2"
10953 /gene_synonym="eva; EVA1"
10954 /note="upstream in-frame stop codon"
10955 CDS 300..881
10956 /gene="MPZL2"
10957 /gene_synonym="eva; EVA1"
10958 /note="epithelial V-like antigen 1"
10959 /codon_start=1
10960 /product="myelin protein zero-like protein 2 precursor"
10961 /protein_id="NP_001239213.1"
10962 /db_xref="CGNC:51090"
10963 /db_xref="GeneID:419779"
10964 /translation="MPGPTWLGAVLVLGVQLRALWPVAAIEVYTSKEVYAVNGTSLRL
10965 KCTFSSSSPISPLLSVTWNFQPEDLSSHEPVFYYLKEPYTPSAGRFKGRITWDGHIER
10966 HDVSIVIWDLQPTDNGTFTCQVKNPRDIDGTIGEVRLRVVQKVNFSEIHFLAIAIGSA
10967 CGLMIIVVTLVIICRHRRKKQQEKMIEVADTEL"
10968 sig_peptide 300..374
10969 /gene="MPZL2"
10970 /gene_synonym="eva; EVA1"
10971 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
10972 ORIGIN
10973 1 ggatgattgc aacacaaaag agcaggggaa tatgggaggc agaagaaatt aatcttacct
10974 61 tgaaaatctg cctgctttac acgcagaagt gaaccgtctg actgccccac ctcaccttca
10975 121 gtgcagggca gtgacggggc aggaagacgt attgccttcc aggccaagct gagaaaaagg
10976 181 aatttactca accggcccgg gaaggctttg agaaactcat cttttatccg gttttcaaga
10977 241 gcctgaaaca aacttccccc tgtgctgctc agcccgcaga gcacggactt gtttccccga
10978 301 tgcctggccc cacctggctg ggggctgtgc tcgtccttgg ggtacagctc cgagcactgt
10979 361 ggcctgttgc agccatagaa gtttatactt ctaaggaggt gtatgctgtg aatggaacta
10980 421 gcctacggct caaatgcacc ttctccagca gcagccctat tagcccactg ctgtcagtga
10981 481 cctggaactt ccagcccgag gacctaagct ctcatgagcc agtattttat tatctcaagg
10982 541 agccctacac gccgtctgct ggacgattta aagggcgaat cacttgggat gggcatattg
10983 601 agcgtcatga tgtttccatc gttatctggg atttacagcc cactgacaat ggaacattca
10984 661 cctgccaagt gaagaaccca cgagacatcg atggcaccat tggagaagtg cgactcagag
10985 721 ttgtgcagaa agtgaatttc tcagaaatcc acttccttgc catagccatt gggtctgcat
10986 781 gtggtctgat gatcattgtg gtgacacttg tgattatctg tcggcatcgt cggaagaaac
10987 841 agcaagagaa gatgatcgag gtggcagaca ctgaactgta agcacaaaag gggagaggga
10988 901 gaaaggcttc tgggaaagct tgtcaaatat atcttcatgg gcattctgaa tcattggctt
10989 961 gggtcctata ttaagcatct acaatgcaaa actgccaaca taattagcaa taattggctg
10990 1021 cttacttgca gtcagaacag agccccaggg acgaatgaac tttggagtct tcattttgct
10991 1081 cttctacttt gaggtggctc cttactcaga gtagaagccc atacaaattc ctgttatata
10992 1141 ctatgtatgt tgtatgtagc tcagaacctc actgctgctc aggatatctg atgctgattt
10993 1201 tctttttttt tccttttttt attattgttt tgtcactttt ttcatagcag cagagaaaag
10994 1261 gagaagctga agaatattgg agagaaggaa atcactccat tagaagacta gaggtctctg
10995 1321 atagtatata caatgcaggt atctaatcaa acattctcta attaatgtgt tggtgttact
10996 1381 gcagactttc tagacagttt tatttacgta tttcacatcc attctgcagt cagcaggcca
10997 1441 cagtggccat aaatatgaac aactaagacc acagacacat gttgctcttg aggaaccttc
10998 1501 agaggaagac tgaaaactga ataggcggtc gtgacagagc ttaaccttaa tctctcttaa
10999 1561 ccataagagg gatttctcca ccttattgct gaggatcatt gcaggaaagc aattattgct
11000 1621 gctttccatg ttgtgcttgc tctgtggaga gaggaataaa ttccctttca ctagttttga
11001 1681 atatgctttt tgattcactt aatctttaat tccttataat cgctacagga agactgaaac
11002 1741 tctttccaga tttgctggcc ttactgaaat atttcagccc agtttttccc cattcaattt
11003 1801 ctgaggtcaa cagatgcttc ccccatgttt gttttcaaca ataatcatga gtaatgaatg
11004 1861 ttttgttttt cttccaatcc tccttctcag gtacttctaa agcagatggt gaaagcttgt
11005 1921 aattttggat cttagaacaa agctgaatta cagacgcctg atgctggaag tgtggtatcc
11006 1981 ctgctcaacc tgaaattctt gcaagaaaag agagtgacct taacataagt tgtaaagtgt
11007 2041 tatttccttc actgaagaac aacaggaaga ccttgcccca cgaacaggga gccgtcctta
11008 2101 atctccacag ctgccaaacg tgaacaaatt ggttgtgagg atgcaatgtc agccgatttg
11009 2161 aaccaaacgc cgagatgagt gactggatag atatttgctg tgtctgagca ggcacacgct
11010 2221 cgtgcacctt aaaaattgaa aggtaccttt gtgctgccag attattgtgt ctggtgtcac
11011 2281 ctaaaggaag accattaggt gagggatcag aggagctgct acaacgtact ttaagtcgct
11012 2341 ttgctactgt aagtggaaag tgttacagat aaggaatgtc tgctgtttcc tgttagggat
11013 2401 aactggacca gtgggtgtgt ttttcacgcc agtaggcttt gtccatggaa tagctgagaa
11014 2461 aacatcctcc cactggcaca gcactgtttc tctggatgtt gcttaaagcc ccacatagca
11015 2521 ccagcacatc ttacccctgt aaatccacct gtttaacaca ttccctgtat tttcatcgaa
11016 2581 cctcaagcaa acggaacccc gggtcactaa aaccactgag ctatttgggt gtttaaccaa
11017 2641 cactaaatca aaatatcagc ctgtttattc aaagagtaac tttatggctt tataactctt
11018 2701 gagtgtaaca tgctgaccaa gttatctgtt tgtacagttt tgttttctat cgtgtccatc
11019 2761 ataaataaac gcggtttgtg ggtagaagtg
11020 //
11021
11022 LOCUS NM_001006305 971 bp mRNA linear VRT 04-JAN-2017
11023 DEFINITION Gallus gallus NFU1 iron-sulfur cluster scaffold (NFU1), mRNA.
11024 ACCESSION NM_001006305 XM_417664
11025 VERSION NM_001006305.2
11026 KEYWORDS RefSeq.
11027 SOURCE Gallus gallus (chicken)
11028 ORGANISM Gallus gallus
11029 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11030 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11031 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11032 Phasianidae; Phasianinae; Gallus.
11033 REFERENCE 1 (bases 1 to 971)
11034 AUTHORS Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
11035 HS, Cho BW and Han JY.
11036 TITLE Analysis of chicken embryonic gonad expressed sequenced tags
11037 JOURNAL Anim. Genet. 37 (1), 85-86 (2006)
11038 PUBMED 16441308
11039 REFERENCE 2 (bases 1 to 971)
11040 AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
11041 Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
11042 P, Hayashizaki Y and Buerstedde JM.
11043 TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
11044 gene function analysis
11045 JOURNAL Genome Biol. 6 (1), R6 (2005)
11046 PUBMED 15642098
11047 REFERENCE 3 (bases 1 to 971)
11048 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
11049 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
11050 TITLE A comprehensive collection of chicken cDNAs
11051 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
11052 PUBMED 12445392
11053 COMMENT VALIDATED REFSEQ: This record has undergone validation or
11054 preliminary review. The reference sequence was derived from
11055 CN210054.1, CV862347.1 and BU403624.1.
11056 On Sep 27, 2011 this sequence version replaced gi:57529446.
11057
11058 ##Evidence-Data-START##
11059 Transcript exon combination :: AJ721119.1, BU330969.1 [ECO:0000332]
11060 RNAseq introns :: single sample supports all introns
11061 SAMEA2201357, SAMEA2201358
11062 [ECO:0000348]
11063 ##Evidence-Data-END##
11064
11065 ##RefSeq-Attributes-START##
11066 gene product(s) localized to mito. :: inferred from homology
11067 ##RefSeq-Attributes-END##
11068 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
11069 1-679 CN210054.1 1-679
11070 680-905 CV862347.1 613-838
11071 906-968 CV862347.1 839-901
11072 969-971 BU403624.1 705-707
11073 FEATURES Location/Qualifiers
11074 source 1..971
11075 /organism="Gallus gallus"
11076 /mol_type="mRNA"
11077 /db_xref="taxon:9031"
11078 /chromosome="22"
11079 /map="22"
11080 /breed="Leghorn"
11081 gene 1..971
11082 /gene="NFU1"
11083 /gene_synonym="HIRIP5"
11084 /note="NFU1 iron-sulfur cluster scaffold"
11085 /db_xref="CGNC:14"
11086 /db_xref="GeneID:419513"
11087 CDS 30..788
11088 /gene="NFU1"
11089 /gene_synonym="HIRIP5"
11090 /note="HIRA interacting protein 5"
11091 /codon_start=1
11092 /product="NFU1 iron-sulfur cluster scaffold homolog,
11093 mitochondrial"
11094 /protein_id="NP_001006305.2"
11095 /db_xref="CGNC:14"
11096 /db_xref="GeneID:419513"
11097 /translation="MAAARWLGAAAGLGGRICHTMLKGHNLTTQQPFHQLARRKQLLP
11098 SAVLHNTVRCMFIQTQDTPNPNSLKFIPGKEVLESRTMEFSSPAAAFCSPLARQLFRI
11099 EGVKSVFFGPDFITITKESEDLDWNLLKPDIYATIMDFFASGLPVLTEEAPRTDTAQS
11100 EEDDEVVLMIKELLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLK
11101 NGIQNMLQFYIPEVEGVEQVVDDDDDVEKEANST"
11102 ORIGIN
11103 1 gcggagcggc ggccgtgagg aacgccaaga tggcggctgc gcggtggctc ggcgcggctg
11104 61 cggggctggg cggccggatt tgtcacacga tgttaaaagg tcataacctg acaactcaac
11105 121 agcccttcca ccaacttgca aggaggaaac agcttcttcc atctgcagtg ttgcataata
11106 181 cagtaagatg catgtttatt caaactcagg acacaccaaa cccaaacagc ctgaagttta
11107 241 ttccaggcaa agaagtgctg gagtccagga ctatggagtt ttccagccca gctgcagcat
11108 301 tttgctcacc tctagcaagg cagttattca gaattgaagg agttaaaagc gttttctttg
11109 361 ggccagactt catcaccatc accaaggaga gtgaagacct ggattggaac ttgctgaaac
11110 421 cagatattta tgcaactata atggatttct ttgcctcagg tttacctgta cttactgaag
11111 481 aggcacctag gacagataca gctcagtcag aagaagacga tgaagttgtg ttaatgatta
11112 541 aagaactgct ggatacaaga ataaggccaa cagtgcaaga agatggtggt gatgttattt
11113 601 ataaaggctt tgaggatggc attgtgcagc tgaagttgca gggttcatgc accagctgtc
11114 661 ccagttccat catcaccctg aagaacggga tacagaacat gctccagttc tacatccctg
11115 721 aagtggaagg cgtggaacag gttgttgatg atgatgatga tgtggagaaa gaagcaaatt
11116 781 ctacgtgagc ttccatcatc cgtggccaaa tcagtattta tttcatgtac gtaaatcagc
11117 841 ctcgttctgt ggaacaacca aatctgcctt tctcatcaga aaaagagtca cacttccacc
11118 901 tgtgagagtg tctgctcagt gtcagcagcg tgttcactaa tttattaaat gctgtctgtt
11119 961 caaacaaaga a
11120 //
11121
11122 LOCUS NM_001024456 3708 bp mRNA linear VRT 04-JAN-2017
11123 DEFINITION Gallus gallus N-ethylmaleimide sensitive factor, vesicle fusing
11124 ATPase (NSF), mRNA.
11125 ACCESSION NM_001024456 XM_418094
11126 VERSION NM_001024456.1
11127 KEYWORDS RefSeq.
11128 SOURCE Gallus gallus (chicken)
11129 ORGANISM Gallus gallus
11130 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11131 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11132 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11133 Phasianidae; Phasianinae; Gallus.
11134 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
11135 NCBI review. The reference sequence was derived from CR406350.1.
11136 On Sep 21, 2011 this sequence version replaced gi:118102798.
11137
11138 ##Evidence-Data-START##
11139 Transcript exon combination :: CR406350.1 [ECO:0000332]
11140 RNAseq introns :: mixed/partial sample support
11141 SAMEA2201357, SAMEA2201358
11142 [ECO:0000350]
11143 ##Evidence-Data-END##
11144 FEATURES Location/Qualifiers
11145 source 1..3708
11146 /organism="Gallus gallus"
11147 /mol_type="mRNA"
11148 /db_xref="taxon:9031"
11149 /chromosome="27"
11150 /map="27"
11151 /breed="Leghorn"
11152 gene 1..3708
11153 /gene="NSF"
11154 /note="N-ethylmaleimide sensitive factor, vesicle fusing
11155 ATPase"
11156 /db_xref="CGNC:715"
11157 /db_xref="GeneID:419972"
11158 CDS 6..2228
11159 /gene="NSF"
11160 /EC_number="3.6.4.6"
11161 /codon_start=1
11162 /product="vesicle-fusing ATPase"
11163 /protein_id="NP_001019627.1"
11164 /db_xref="CGNC:715"
11165 /db_xref="GeneID:419972"
11166 /translation="MAGRPMQAARCPTDELSLTNCAVVNDTDFPSGQHVVVKTSPNHK
11167 YIFTLRTHPSVVPGNIAFSLPQRKWAGLSIGQEIDVSLYTFDKSKQCIATMTIEIDFL
11168 QKKNIDSNPYDTDKMAAEFIQQFNSQAFSVGQQLVFSFNDKLFGLLVKSMEGMDPSIL
11169 KGESGASKKQKIEVGLVFGNSQVAFEKAENSSLNLIGKSKTKENRQSIINPDWNFEKM
11170 GIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGCGKTLMARQIGKM
11171 LNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGVHIIIFDEIDAIC
11172 KQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVK
11173 MEIGLPDEKGRFQILHIHTVRMREHQLLAEDVDIAELAVETKNFSGAELEGLVRAAQS
11174 TAMNRHIKASTKVEVDMEKAESLRVTRGDFFASLENDIKPAFGTNQEDYASYIMNGII
11175 KWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK
11176 ICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQ
11177 ALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLMEALEL
11178 LGNFKDKERSTIAQNVKGKSVWIGIKKLLMLIEMSLQMDPEYRVKKFLALLREEGTVP
11179 "
11180 ORIGIN
11181 1 acaagatggc ggggcggcct atgcaagcag cacgatgtcc cactgatgaa ctgtcattaa
11182 61 cgaactgtgc ggtggtgaat gacacagact tcccatctgg acaacacgtt gtggtgaaga
11183 121 cttctcccaa tcacaaatac atcttcacac tgagaacaca tccctctgtt gttcctggca
11184 181 acatcgcctt cagcttgccc cagagaaaat gggctggact ttccatagga caagagatag
11185 241 acgtttccct gtacactttc gacaagtcta agcagtgtat tgccacgatg acgattgaga
11186 301 tagactttct gcagaagaag aacattgact ccaacccata tgacacagac aagatggctg
11187 361 ctgagttcat ccagcagttc aacagccagg ccttctctgt agggcagcag cttgtgttca
11188 421 gttttaacga caaacttttc ggcctgttgg taaagtccat ggaaggaatg gatcccagca
11189 481 tcctcaaagg agagtctgga gcaagcaaaa agcagaagat tgaggtgggt ttggtttttg
11190 541 gaaacagcca agtggccttt gaaaaagctg agaattcctc tctcaatctg attggtaaat
11191 601 caaagaccaa agagaaccgc cagtccatca tcaacccaga ctggaatttt gagaaaatgg
11192 661 gcattggggg cctcgacaaa gagttctcag atatcttccg acgagctttt gcttctcgag
11193 721 tttttccacc tgaaattgtg gagcaaatgg gctgcaagca tgtgaaaggc attctgctgt
11194 781 atggacctcc aggctgtggt aaaacgctta tggccagaca gattggcaag atgctgaatg
11195 841 ccagagaacc aaaagtggtc aacgggccag aaatcctcaa taaatacgtg ggcgagtctg
11196 901 aggccaacat ccgcaagctg tttgctgatg cagaagagga acaaagaagg cttggagcaa
11197 961 acagtggtgt tcatatcatc attttcgatg agattgatgc aatctgcaag cagcgaggaa
11198 1021 gcatggcagg aagcactgga gttcacgata ccgttgtcaa ccagctgctg tctaaaattg
11199 1081 atggagtgga gcaactcaat aacatcctgg tgattggaat gaccaacaga cctgacctga
11200 1141 ttgatgaagc tctgctgaga ccagggagac tggaggtgaa aatggagatt ggtttgccag
11201 1201 atgagaaggg tcgattccag attctccata tccacacagt aaggatgcgg gaacaccagc
11202 1261 tgctggctga agatgtggac attgcagaac tggcagttga gacaaaaaac ttcagtggtg
11203 1321 ctgaattaga aggtttagtt cgagctgctc agtctactgc aatgaacaga catatcaagg
11204 1381 ccagcaccaa agtggaagta gacatggaga aggcagaaag cttacgtgtg acaagaggag
11205 1441 acttctttgc atccttggag aatgatatca aaccagcatt tggaaccaac caggaagact
11206 1501 acgcgagtta tatcatgaat ggcattatta agtggggtga tccagtaacg agggtgttgg
11207 1561 atgatgggga gctgcttgtt caacaaacca agaacagtga ccgtactccg ctggttagcg
11208 1621 ttcttctaga aggtccccca cacagtggga agactgcatt agcagcaaag atagctgagg
11209 1681 aatccaactt ccctttcatc aagatctgtt ctcctgataa gatgattgga ttttcagaaa
11210 1741 cagccaaatg ccaggctatg aagaagatct ttgatgatgc atacaagtcc cagctcagct
11211 1801 gcgtcgttgt ggatgacatt gagagacttc tagattatgt tccaattggg ccacgttttt
11212 1861 ctaatctggt gttgcaagcc cttcttgtgc tgctgaagaa ggccccccct cagggtcgca
11213 1921 agctcctgat cattggaacc accagtcgca aagatgtcct gcaggaaatg gaaatgctga
11214 1981 atgctttcag caccacgatc catgtaccca acattgcaac aggggaacag ctgatggaag
11215 2041 ctttggagct cctgggtaac tttaaagata aggaacgcag caccattgca cagaacgtca
11216 2101 aagggaaatc tgtttggatc ggtatcaaga agctgctgat gctgatagag atgtcactac
11217 2161 aaatggatcc tgagtatcgg gtgaaaaaat tcttggctct tctgagagaa gaaggaacag
11218 2221 ttccctagac tgaagatgga ccaagtgcaa gatcagcagc tggaaaagtg accaacctgg
11219 2281 agaatataca ctgggatctt tactcttctg tgttcaacac actggacaaa gtgaaacact
11220 2341 cccctttttc caagaaccca atgtggaatt tgcatgttta gtgcaataca gtatctttat
11221 2401 tctttgtctt taatatacag atatcatgtg tcttctagaa cactgtgctt ctgtctctgt
11222 2461 gcaggcaagg ctgcgttctc atttgatttt agcatggggg aaatgttcta taagttttga
11223 2521 agcaacgctc acttatgtcc agcatccagt tactacagta ggaaagaaaa tgtgagttct
11224 2581 agtaaatcct gtggtgaagg cttattaaaa tactcctctg tgttctgatt tgatgaatgc
11225 2641 tttcttgttc ggttatgtca tcctatgcct cactgaacac tgagcagggc tgctaaccca
11226 2701 gagtcagtga ccacagtaat gaaacttcag aatttccaaa atgtaaatac ccattttctt
11227 2761 ttatgcccag gtgttttctg gctaatgata ataaggactg gaagaaggca gggaagtcta
11228 2821 ttgatcagaa caaaggaaaa acttcagaat ctggtatttt aaagcattga aacttgttct
11229 2881 caattcaaaa accggtttag tggtgctgat tccaacctga aagctctgta tgagtactct
11230 2941 gtatatgatg gttttggcat tagttggcct cactacatcc cagttttctg ccacattacc
11231 3001 aaaggatgaa gttcctcctt ggagatgaag ccaagctcta tggatgcacg agatgtgcat
11232 3061 tgccatgctt ttgcacttaa actaaggaat gtatcaaact ttgctatgtg gtctttcccc
11233 3121 aatagtcttt ttgcatcaat gaggtgctgt tatgatgact gcacgaggat actcccctgt
11234 3181 ggttccttgg ctccacatgt ttaataaggt tcatggaaca tacctcaatt tggtggggca
11235 3241 cgcaatcaaa gccatttatg aggtgttagt cagtgtagct tccttgactt gacaggacat
11236 3301 gctgttaagg gctagcagct tgtatccagc gaggtgttcc cagggaagga gggtgctttg
11237 3361 cgttttttca ggcccaaagg taaaggtact gcagtcctta ttgcatactt agggcaatca
11238 3421 gagtgtttca gtcactccac tctggtttct tttcctttgg cagtgctgtt gtattgtgat
11239 3481 gacattgcga gtcccagtgg ttattattcc ctctcattct gtgtatgatc ttgtgacttt
11240 3541 gtttgttcct ttctttcctc tgctagtccc tgtgacagca gcactcgtta acttatttca
11241 3601 gagtaaatga tgtaaacctt attgtgtcta tgtccagagc tatattgatg aataaatatc
11242 3661 ttgttcagtt gcacattatt ggattcaata aaaaaaagca caactgtg
11243 //
11244
11245 LOCUS NM_001242604 6232 bp mRNA linear VRT 04-JAN-2017
11246 DEFINITION Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript
11247 variant 2, mRNA.
11248 ACCESSION NM_001242604 XM_001234121 XM_015298042
11249 VERSION NM_001242604.1
11250 KEYWORDS RefSeq.
11251 SOURCE Gallus gallus (chicken)
11252 ORGANISM Gallus gallus
11253 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11254 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11255 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11256 Phasianidae; Phasianinae; Gallus.
11257 REFERENCE 1 (bases 1 to 6232)
11258 AUTHORS Nakata D and Troy FA 2nd.
11259 TITLE Degree of polymerization (DP) of polysialic acid (polySia) on
11260 neural cell adhesion molecules (N-CAMS): development and
11261 application of a new strategy to accurately determine the DP of
11262 polySia chains on N-CAMS
11263 JOURNAL J. Biol. Chem. 280 (46), 38305-38316 (2005)
11264 PUBMED 16172115
11265 REMARK GeneRIF: analysis of polymerization of polysialic acid on neural
11266 cell adhesion molecules
11267 REFERENCE 2 (bases 1 to 6232)
11268 AUTHORS Milev P, Maurel P, Haring M, Margolis RK and Margolis RU.
11269 TITLE TAG-1/axonin-1 is a high-affinity ligand of neurocan,
11270 phosphacan/protein-tyrosine phosphatase-zeta/beta, and N-CAM
11271 JOURNAL J. Biol. Chem. 271 (26), 15716-15723 (1996)
11272 PUBMED 8663515
11273 REFERENCE 3 (bases 1 to 6232)
11274 AUTHORS Colwell G, Li B, Forrest D and Brackenbury R.
11275 TITLE Conserved regulatory elements in the promoter region of the N-CAM
11276 gene
11277 JOURNAL Genomics 14 (4), 875-882 (1992)
11278 PUBMED 1478668
11279 REFERENCE 4 (bases 1 to 6232)
11280 AUTHORS Rao Y, Wu XF, Gariepy J, Rutishauser U and Siu CH.
11281 TITLE Identification of a peptide sequence involved in homophilic binding
11282 in the neural cell adhesion molecule NCAM
11283 JOURNAL J. Cell Biol. 118 (4), 937-949 (1992)
11284 PUBMED 1380002
11285 REFERENCE 5 (bases 1 to 6232)
11286 AUTHORS Cunningham,B.A., Hemperly,J.J., Murray,B.A., Prediger,E.A.,
11287 Brackenbury,R. and Edelman,G.M.
11288 TITLE Neural cell adhesion molecule: structure, immunoglobulin-like
11289 domains, cell surface modulation, and alternative RNA splicing
11290 JOURNAL Science 236 (4803), 799-806 (1987)
11291 PUBMED 3576199
11292 REFERENCE 6 (bases 1 to 6232)
11293 AUTHORS Hemperly,J.J., Edelman,G.M. and Cunningham,B.A.
11294 TITLE cDNA clones of the neural cell adhesion molecule (N-CAM) lacking a
11295 membrane-spanning region consistent with evidence for membrane
11296 attachment via a phosphatidylinositol intermediate
11297 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83 (24), 9822-9826 (1986)
11298 PUBMED 3467341
11299 REMARK Erratum:[Proc Natl Acad Sci U S A 1987 May;84(9):3069]
11300 REFERENCE 7 (bases 1 to 6232)
11301 AUTHORS Cole,G.J., Loewy,A., Cross,N.V., Akeson,R. and Glaser,L.
11302 TITLE Topographic localization of the heparin-binding domain of the
11303 neural cell adhesion molecule N-CAM
11304 JOURNAL J. Cell Biol. 103 (5), 1739-1744 (1986)
11305 PUBMED 2430978
11306 REFERENCE 8 (bases 1 to 6232)
11307 AUTHORS Murray,B.A., Owens,G.C., Prediger,E.A., Crossin,K.L.,
11308 Cunningham,B.A. and Edelman,G.M.
11309 TITLE Cell surface modulation of the neural cell adhesion molecule
11310 resulting from alternative mRNA splicing in a tissue-specific
11311 developmental sequence
11312 JOURNAL J. Cell Biol. 103 (4), 1431-1439 (1986)
11313 PUBMED 3771645
11314 REFERENCE 9 (bases 1 to 6232)
11315 AUTHORS Hemperly,J.J., Murray,B.A., Edelman,G.M. and Cunningham,B.A.
11316 TITLE Sequence of a cDNA clone encoding the polysialic acid-rich and
11317 cytoplasmic domains of the neural cell adhesion molecule N-CAM
11318 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83 (9), 3037-3041 (1986)
11319 PUBMED 3458261
11320 REMARK Erratum:[Proc Natl Acad Sci U S A 1988 Mar;85(6):2008]
11321 COMMENT VALIDATED REFSEQ: This record has undergone validation or
11322 preliminary review. The reference sequence was derived from
11323 AADN04000117.1.
11324 On or before Feb 10, 2016 this sequence version replaced
11325 gi:971431482, gi:118102015.
11326
11327 Transcript Variant: This variant (2) lacks several alternate
11328 in-frame exons compared to variant 1. The resulting protein
11329 (isoform 2) is shorter compared to isoform 1.
11330
11331 Sequence Note: The RefSeq transcript and protein were derived from
11332 genomic sequence to make the sequence consistent with the reference
11333 genome assembly. The genomic coordinates used for the transcript
11334 record were based on alignments.
11335
11336 ##Evidence-Data-START##
11337 RNAseq introns :: mixed/partial sample support SAMEA2201357,
11338 SAMEA2201358 [ECO:0000350]
11339 ##Evidence-Data-END##
11340 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
11341 1-242 AADN04000117.1 1215672-1215913 c
11342 243-317 AADN04000117.1 1179523-1179597 c
11343 318-536 AADN04000117.1 1177762-1177980 c
11344 537-680 AADN04000117.1 1177055-1177198 c
11345 681-818 AADN04000117.1 1176052-1176189 c
11346 819-936 AADN04000117.1 1175462-1175579 c
11347 937-1106 AADN04000117.1 1174938-1175107 c
11348 1107-1249 AADN04000117.1 1174679-1174821 c
11349 1250-1279 AADN04000117.1 1170826-1170855 c
11350 1280-1430 AADN04000117.1 1167323-1167473 c
11351 1431-1615 AADN04000117.1 1166565-1166749 c
11352 1616-1712 AADN04000117.1 1166116-1166212 c
11353 1713-1883 AADN04000117.1 1165618-1165788 c
11354 1884-2015 AADN04000117.1 1165055-1165186 c
11355 2016-2018 AADN04000117.1 1159682-1159684 c
11356 2019-2143 AADN04000117.1 1153742-1153866 c
11357 2144-2324 AADN04000117.1 1152847-1153027 c
11358 2325-2532 AADN04000117.1 1143238-1143445 c
11359 2533-2649 AADN04000117.1 1142932-1143048 c
11360 2650-6232 AADN04000117.1 1135018-1138600 c
11361 FEATURES Location/Qualifiers
11362 source 1..6232
11363 /organism="Gallus gallus"
11364 /mol_type="mRNA"
11365 /db_xref="taxon:9031"
11366 /chromosome="24"
11367 /map="24"
11368 gene 1..6232
11369 /gene="NCAM1"
11370 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11371 /note="neural cell adhesion molecule 1"
11372 /db_xref="CGNC:5910"
11373 /db_xref="GeneID:428253"
11374 CDS 191..2770
11375 /gene="NCAM1"
11376 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11377 /EC_number="2.7.11.1"
11378 /note="isoform 2 precursor is encoded by transcript
11379 variant 2"
11380 /codon_start=1
11381 /product="neural cell adhesion molecule 1 isoform 2
11382 precursor"
11383 /protein_id="NP_001229533.1"
11384 /db_xref="CGNC:5910"
11385 /db_xref="GeneID:428253"
11386 /translation="MLPAAALPWTLFFLGAAASLQVDIVPSQGEISVGESKFFLCQVA
11387 GEAKYKDISWFSPNGEKLTPNQQRISVVRNDDFSSTLTIYNANIDDAGIYKCVVSSVE
11388 EGDSEATVNVKIFQKLMFKNAPTPQEFKEGDDAVIVCDVVSSLPPTIIWKHKGRDVIL
11389 KKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPSVRARQ
11390 STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKK
11391 VDKSDEAEYICIAENKAGEQDATIHLKVFAKPKITYVENKTAMELEDQITLTCEASGD
11392 PIPSITWKTSTRNISNEEKASWTRPEKQETLDGRIVVRSHARVSSLTLKEIQYTDAGE
11393 YVCTASNTIGQDSQAMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSAVISWFR
11394 DGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESSEFILVQAD
11395 TPSSPSIDRVEPYSSTARVEFDEPEATGGVPILKYKAEWRALGEGEWHSRLYDAKEAN
11396 VEGTITISGLKPETTYSVRLSAVNGKGVGEISLPSDFKTQPVQGEPSAPKLEGQMGED
11397 GNSIKVNVIKQDDGGSPIRHYLIKYKAKHSSEWKPEIRLPSGSDHVMLKSLDWNAEYE
11398 VYVIAENQQGKSKPAHYAFRTSAQPTVIPASTSPTSGLGTAAIVGILIVIFVLLLVAV
11399 DVTCYFLNKCGLLMCIAVNLCGKSGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEEER
11400 TPNHDGGKHTEPNETTPLTEPEKTPVEDKSEVQATETKTPPAEVKTVPNEATQTNENE
11401 SKA"
11402 sig_peptide 191..247
11403 /gene="NCAM1"
11404 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11405 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
11406 misc_feature 644..658
11407 /gene="NCAM1"
11408 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11409 /experiment="experimental evidence, no additional details
11410 recorded"
11411 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
11412 Region: Heparin-binding. {ECO:0000255}"
11413 misc_feature 671..685
11414 /gene="NCAM1"
11415 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11416 /experiment="experimental evidence, no additional details
11417 recorded"
11418 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
11419 Region: Heparin-binding. {ECO:0000255}"
11420 misc_feature 2357..2410
11421 /gene="NCAM1"
11422 /gene_synonym="N-CAM; N-CAM-1; NACM; NCAM-1"
11423 /experiment="experimental evidence, no additional details
11424 recorded"
11425 /note="propagated from UniProtKB/Swiss-Prot (P13590.3);
11426 transmembrane region"
11427 ORIGIN
11428 1 gtcacggcgg cggcgccggg aggcggccgg ggcgcagcgg gcggagcggg gacacgcgcg
11429 61 gagcggagcg gagcggcgcg aaggggacgc ggggcaaaaa cgggaagatc catccggagg
11430 121 gccgcgtggt gctccgcccg cacggaacgg ctatttcgga gcggcccctc tcgccccccc
11431 181 gccggctgcg atgctgcccg ccgccgcgct gccctggacg ttgttttttc tcggagccgc
11432 241 agcctctcta caagtggata ttgttccaag tcagggagag atcagcgttg gagaatccaa
11433 301 gttcttctta tgtcaagtgg caggggaagc caaatacaaa gacatttcct ggttttcccc
11434 361 taacggtgag aagctgacgc ccaaccaaca gcgcatctca gtggtgcgaa atgatgactt
11435 421 ctcctccacc ctcaccatct acaacgccaa cattgatgat gctggcatct ataaatgtgt
11436 481 tgtcagcagc gtggaggagg gagactctga agccaccgtc aatgtgaaaa ttttccaaaa
11437 541 gctcatgttc aagaatgccc ccactcctca ggaattcaag gaaggggatg atgctgtgat
11438 601 tgtgtgtgat gtggtcagct cgctgcctcc taccatcatc tggaaacaca aaggcaggga
11439 661 tgtcatccta aaaaaagatg ttcggtttat agtgctgtcc aacaactacc tgcagatccg
11440 721 gggaatcaag aaaacagatg aagggacgta ccgctgtgag ggccgcatcc tggctcgtgg
11441 781 ggagatcaac ttcaaagata ttcaggtcat tgtaaatgta cctccttctg tgcgtgccag
11442 841 gcagagcact atgaacgcca ctgccaacct cagccagtct gtcaccttag catgtgatgc
11443 901 tgatggcttt cctgagccaa ccatgacgtg gacaaaggat ggagagccaa tagagcagga
11444 961 ggataacgaa gagaaataca gttttaacta tgatgggtcc gagctgatca tcaagaaggt
11445 1021 ggataagagt gacgaagcag agtacatctg catcgctgag aacaaggctg gcgagcagga
11446 1081 tgccaccatt catctcaaag tctttgcaaa acccaaaatc acatatgtgg agaataaaac
11447 1141 agctatggag ctggaggatc agatcacact gacctgtgag gcctctgggg acccaatccc
11448 1201 ttccatcacg tggaaaactt ccacccggaa catcagcaat gaagagaagg cttcgtggac
11449 1261 ccggcccgag aaacaagaga ccctggatgg gcgcatcgtg gtgcgcagcc acgcgcgggt
11450 1321 atcgtccctg actctcaaag aaatccagta cacagacgcc ggagagtacg tgtgcacggc
11451 1381 cagcaacacc atcgggcagg actcacaggc catgtacctc gaagtgcagt atgctcccaa
11452 1441 gcttcagggc cctgtggctg tctatacctg ggaagggaat caagtgaaca tcacctgtga
11453 1501 ggtatttgct tatcccagtg ctgtcatctc ctggttccga gatggacagc tgcttcccag
11454 1561 ctcaaactac agcaacatca agatctacaa cactccatca gcaagctacc tggaggtgac
11455 1621 accagactct gaaaatgact ttggcaacta caactgcact gctgtgaacc gcattggcca
11456 1681 ggaatcctca gagttcattc ttgtgcaggc ggatactccg tcctctcctt ctattgacag
11457 1741 agtggagccc tactctagta ctgcccgtgt ggagttcgat gagcctgaag ctactggtgg
11458 1801 ggtgcccatc ctcaaataca aagcagagtg gagagcactg ggtgaaggag aatggcactc
11459 1861 aagattgtat gatgcaaaag aggcaaatgt ggagggcacg atcactatca gtggcctgaa
11460 1921 acctgagaca acctactcag tgagactgtc tgcagtcaat ggcaagggtg tgggtgagat
11461 1981 tagcctgcca tccgacttca agacacagcc agttcaaggg gaacccagtg cacccaaact
11462 2041 ggaagggcag atgggagaag acggaaactc catcaaagtg aacgttatca agcaggatga
11463 2101 tggtggctcc ccaatcaggc attacctgat caaatacaaa gctaaacatt cctcagaatg
11464 2161 gaaaccagag atcagactgc cttctggcag tgaccacgtc atgctcaagt ctctggactg
11465 2221 gaatgcagag tatgaggttt atgtgatagc tgaaaaccag caggggaagt ccaaacccgc
11466 2281 tcactacgct ttccggacat ctgctcagcc tactgtcatc ccagccagca ctagccctac
11467 2341 gtcaggcctg gggactgctg ccatcgtagg cattctcatt gttatctttg tgctgctcct
11468 2401 ggtggctgtg gacgtcacct gctacttcct gaacaaatgt ggcctgctca tgtgcattgc
11469 2461 tgtcaactta tgtggcaagt ctggaccagg agccaagggc aaagacatgg aggagggcaa
11470 2521 agctgccttc tcgaaagatg agtccaagga gcctattgtg gaagtgcgga ctgaagagga
11471 2581 gcggaccccc aaccatgatg ggggaaaaca cacagagccc aacgagacca ccccactaac
11472 2641 agaaccagag aaaaccccag tagaagacaa atctgaagtg caagcaacgg aaactaagac
11473 2701 acctccagca gaagtgaaga cggtccccaa cgaagccaca caaacaaatg agaatgagag
11474 2761 caaagcatga tcagcgacag atgaaaaacc atggcagaac gacttcaccc aagcatttac
11475 2821 aacacgaaac acaacacaca tctcattcct ctagtgtctg ttgccttttt tttaaaaaac
11476 2881 aaacaaacaa acaaaacaga aaatgcataa atggggaggg gggggttctc tctttttttc
11477 2941 tttttctttt tcttaagatt tttaggaagg ttctatttgt tgtgtacttg cttttaaaaa
11478 3001 gtaacacgtt ttaaaaacag ggttaaaccc atcaccagat cgggggctca gctgtcccct
11479 3061 ggtatgttca aacaagcaga attgcagaat accacttaga gcatcgctga ggagctcaga
11480 3121 gtcacccagt cgtagacgaa aggaaaaaaa gagaaaagaa aaaagaagac cctgttcttt
11481 3181 ccttggttag aatagtagat ttaaccactg tactgcttgc ctgcttggta caggcggtac
11482 3241 ttagtgaaca aagtccacaa tttattttta tacttttcag tcgagtttga aatatgtaaa
11483 3301 gcctcataaa taagttataa tttctgttca ccttgtgttc agtatgcaaa gtgtcgtgag
11484 3361 cattttgtgg ctgaattctg ttctcctcgt tagacattga ttttggggtt tattattttt
11485 3421 gttaggaaga atgccaaaat tgcagcttcg ggggatgtat ttcaatttgc agtattcaga
11486 3481 ctctacattt ctttaaattt tatgttaatt tttgccaact tttgttctct ccagtgttta
11487 3541 caattgacat ttttttaact tttgttgtgt ttaaatgtat ttgtaaaata gctgcctttt
11488 3601 ttttaaagta aatccagact ctagctacta ggttagcagc atgcttgctt tgcaaaggga
11489 3661 gacattttga aatatcgatg tttacagtag tttccccctt tatctttttt aattattatt
11490 3721 attattataa ttattattat tatttcttac tggagtaaga aaaaagagta atgctggtct
11491 3781 ttggtttgtt ttaggggggt ggggcgtggg gaatattcca accacttgtc accaatcgag
11492 3841 gtctgtatcc agcaatccac ataaacacac ttcactttga acgagagagt tgctggagag
11493 3901 agtttcctta tatacttaaa tttattaaga gtgtaagtcc cttgctggac ctgggcctga
11494 3961 atgcataaga aaaatatcat ctctgctttt ttaggacatt cttctctttc cttcatggaa
11495 4021 ccctcccaga gctttgagaa gcagaagagg gattgtacag ttagggctgg gctggtcttg
11496 4081 tctccactgt ttgactacat ccatttctct gtagaatgtt gataactgcc atttcctttg
11497 4141 accccagaaa ctgatttaaa agcaatgcct ttccgcactt aaataaagtt tccttttgag
11498 4201 gagtggtaac actaaaaaca gaacatcctg ctctcatgtg ggtgatgttc atgagcagag
11499 4261 ggtgcttggc agcatgcagg tgtccttact cattgcaggg aagttggact agatgaccct
11500 4321 taagggtccc ttccaaccca aacgattcta tgactctcca taagacccct tctgcaaagt
11501 4381 cagctccagc acattgtgtc tgataagtca tccgtgtatg ctttgcatca tccaggccat
11502 4441 gtatccatgg ctgagtgctt gggcatcagt gccaacgctc ccattgatgt ccctgctctt
11503 4501 ctcatcatgc ttttagcagt cagagaaagg ggctgatgtc acacatgcgt tgttgtggtc
11504 4561 gtcactggga gtcatggagt aacactgaga cttcagggtg ggaagaagag aaggttgagc
11505 4621 agcaggaagg cagaggaaga ccagcccatt gtatagaggt gctccttctc tgggggtttt
11506 4681 gctttgtttg tttttctttt attttccatt cttttttttt ttttttttct actttagatc
11507 4741 tgcaagcttg tgcactgtgg gtgcgtgact tttagtgtga aacgtgtttt ttgtcatagt
11508 4801 attgaaataa ttgaaaaaaa aaaaaagctt caacatagtt tggatgtgga aggtgtagcg
11509 4861 gataggtcag atttaaaata tatatattca ggaaaaaaaa aaagagaaca acttctagga
11510 4921 ggaacacaag cctttaaatg acaaacccga gctgatgatg gcatcattgc atcgcgccat
11511 4981 ggggacgagc agaagggtga tggggttggg gagatcatgc ttggctcggg tgaactgagc
11512 5041 cactatcgtt ggtgtgtcct tctgagtatg cagtctttta cagtggcatc acatgatttc
11513 5101 aaacagtgta aaacagtggt tttgtcattt gctaagtgtg gggtttttgc attttttcct
11514 5161 cagctcctgg ggatggaagt ggaggatggc tggctatgca ggcacagaca ctcaggcaat
11515 5221 accatcccag gcagaacagc agggcaggac aggttcccac ttgagagcct tgtgtcagat
11516 5281 tcagcccatg cttgacccat gacagcagcg ttgatgtaag taaggcgaaa tttggtccgt
11517 5341 ggtccctagg accttatata tcatgcctcc ccgagcagca acaggagcaa acgctgctca
11518 5401 gcgcagtgac ccggagtatg tccagtgcca ctgatcagca cccattgggt ggcactgtgg
11519 5461 tggctgtcac ccagactggt gtttctgcca tgtaaggcca ccagcccagg gccccatcca
11520 5521 gcacccggcc gtgtcacagt gcccggtacc tgctgggttg tgtcctgtgg atggagcctc
11521 5581 tgtgctgctc ccttagtgcc cctgtgacct ccccatcccc agaaccctta gattaatttt
11522 5641 ggagagtgtt tttatacttg cccttaatgg agaataattt gttttaactt ataaatatcc
11523 5701 cattcccaag gtagcttagg cttcattgct tttatttaaa cctttgaaga gggaccaacc
11524 5761 tgatgccgtt tgcgctgtat atgtttatat atgtatccat gccatacata tatatatcta
11525 5821 tatggcaact cagactgatc agcttctagt tgtggagtga catttcatgc tgcaccatac
11526 5881 gtaacgatga tgaggtaata gtgcatccag ttgttcagct tttagagtgg aattttattt
11527 5941 tcacactttt ctatggagcc ttcaaacccc aggttttcac actaggctgt tttgatagtt
11528 6001 gttctcagac ctccactgac atccttaccc agcattccct acttttgggg gccttctatc
11529 6061 ttgttaaaaa aacaaaaaaa caaaaaatct ttttaccgag tgaaacatca gttccacctt
11530 6121 tattcccatt ctcactggtg taaatactga tactaactga ggattttgac tttgcattct
11531 6181 gtcagaatac tgtgttcaaa taaaaattac aaaaaaaaaa taccaacaaa aa
11532 //
11533
11534 LOCUS NM_001004378 1139 bp mRNA linear VRT 04-JAN-2017
11535 DEFINITION Gallus gallus receptor for activated C kinase 1 (RACK1), mRNA.
11536 ACCESSION NM_001004378 XM_415332
11537 VERSION NM_001004378.2
11538 KEYWORDS RefSeq.
11539 SOURCE Gallus gallus (chicken)
11540 ORGANISM Gallus gallus
11541 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11542 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11543 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11544 Phasianidae; Phasianinae; Gallus.
11545 REFERENCE 1 (bases 1 to 1139)
11546 AUTHORS Shiina T, Briles WE, Goto RM, Hosomichi K, Yanagiya K, Shimizu S,
11547 Inoko H and Miller MM.
11548 TITLE Extended gene map reveals tripartite motif, C-type lectin, and Ig
11549 superfamily type genes within a subregion of the chicken MHC-B
11550 affecting infectious disease
11551 JOURNAL J. Immunol. 178 (11), 7162-7172 (2007)
11552 PUBMED 17513765
11553 REFERENCE 2 (bases 1 to 1139)
11554 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
11555 Burnside J, Aggrey SE, Simon J and Cogburn LA.
11556 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
11557 from single and multiple tissue cDNA libraries and CAP3 assembly of
11558 a chicken gene index
11559 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
11560 PUBMED 16554550
11561 REFERENCE 3 (bases 1 to 1139)
11562 AUTHORS Ruby T, Bed'Hom B, Wittzell H, Morin V, Oudin A and Zoorob R.
11563 TITLE Characterisation of a cluster of TRIM-B30.2 genes in the chicken
11564 MHC B locus
11565 JOURNAL Immunogenetics 57 (1-2), 116-128 (2005)
11566 PUBMED 15744538
11567 REFERENCE 4 (bases 1 to 1139)
11568 AUTHORS Takezaki N, Figueroa F, Zaleska-Rutczynska Z, Takahata N and Klein
11569 J.
11570 TITLE The phylogenetic relationship of tetrapod, coelacanth, and lungfish
11571 revealed by the sequences of forty-four nuclear genes
11572 JOURNAL Mol. Biol. Evol. 21 (8), 1512-1524 (2004)
11573 PUBMED 15128875
11574 REFERENCE 5 (bases 1 to 1139)
11575 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
11576 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
11577 TITLE A comprehensive collection of chicken cDNAs
11578 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
11579 PUBMED 12445392
11580 REFERENCE 6 (bases 1 to 1139)
11581 AUTHORS Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J,
11582 Korn B and Buerstedde JM.
11583 TITLE A large database of chicken bursal ESTs as a resource for the
11584 analysis of vertebrate gene function
11585 JOURNAL Genome Res. 10 (12), 2062-2069 (2000)
11586 PUBMED 11116100
11587 REFERENCE 7 (bases 1 to 1139)
11588 AUTHORS Guillemot F, Billault A and Auffray C.
11589 TITLE Physical linkage of a guanine nucleotide-binding protein-related
11590 gene to the chicken major histocompatibility complex
11591 JOURNAL Proc. Natl. Acad. Sci. U.S.A. 86 (12), 4594-4598 (1989)
11592 PUBMED 2499885
11593 COMMENT VALIDATED REFSEQ: This record has undergone validation or
11594 preliminary review. The reference sequence was derived from
11595 AJ392770.1, CB017418.1, BU137661.1, M24193.1, CK608329.1 and
11596 AADN04000554.1.
11597 On Apr 29, 2011 this sequence version replaced gi:52138658.
11598
11599 Sequence Note: This RefSeq record was created from transcripts of
11600 different strains and genomic sequence data because no single
11601 transcript from the same strain was available for the full length
11602 of the gene. The extent of this transcript is supported by
11603 transcript alignments and orthologous data.
11604
11605 ##Evidence-Data-START##
11606 Transcript exon combination :: CN210840.1, CN210893.1 [ECO:0000332]
11607 RNAseq introns :: single sample supports all introns
11608 SAMEA2201357, SAMEA2201358
11609 [ECO:0000348]
11610 ##Evidence-Data-END##
11611 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
11612 1-360 AJ392770.1 1-360
11613 361-635 CB017418.1 2-276
11614 636-863 BU137661.1 379-606
11615 864-959 M24193.1 844-939
11616 960-1128 CK608329.1 15-183 c
11617 1129-1139 AADN04000554.1 50867-50877 c
11618 FEATURES Location/Qualifiers
11619 source 1..1139
11620 /organism="Gallus gallus"
11621 /mol_type="mRNA"
11622 /db_xref="taxon:9031"
11623 /chromosome="16"
11624 /map="16"
11625 /breed="Leghorn"
11626 gene 1..1139
11627 /gene="RACK1"
11628 /gene_synonym="C12-3; c12.3; GNB2L1"
11629 /note="receptor for activated C kinase 1"
11630 /db_xref="CGNC:61"
11631 /db_xref="GeneID:417044"
11632 misc_feature 40..42
11633 /gene="RACK1"
11634 /gene_synonym="C12-3; c12.3; GNB2L1"
11635 /note="upstream in-frame stop codon"
11636 CDS 103..1056
11637 /gene="RACK1"
11638 /gene_synonym="C12-3; c12.3; GNB2L1"
11639 /note="guanine nucleotide-binding protein subunit
11640 beta-2-like 1; guanine nucleotide-binding protein beta
11641 subunit 2-like 1; guanine nucleotide binding 12.3; Guanine
11642 nucleotide-binding protein beta subunit2-like 1; guanine
11643 nucleotide binding protein (G protein), beta polypeptide
11644 2-like 1; receptor of activated protein kinase C 1;
11645 guanine nucleotide-binding protein subunit beta-like
11646 protein 12.3; MHC B complex protein 12.3"
11647 /codon_start=1
11648 /product="receptor of activated protein C kinase 1"
11649 /protein_id="NP_001004378.1"
11650 /db_xref="CGNC:61"
11651 /db_xref="GeneID:417044"
11652 /translation="MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK
11653 LTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV
11654 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS
11655 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML
11656 WDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS
11657 TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR"
11658 misc_feature 106..108
11659 /gene="RACK1"
11660 /gene_synonym="C12-3; c12.3; GNB2L1"
11661 /experiment="experimental evidence, no additional details
11662 recorded"
11663 /note="N-acetylthreonine. {ECO:0000250}; propagated from
11664 UniProtKB/Swiss-Prot (P63247.1); acetylation site"
11665 misc_feature 139..234
11666 /gene="RACK1"
11667 /gene_synonym="C12-3; c12.3; GNB2L1"
11668 /experiment="experimental evidence, no additional details
11669 recorded"
11670 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11671 Region: WD 1"
11672 misc_feature 283..375
11673 /gene="RACK1"
11674 /gene_synonym="C12-3; c12.3; GNB2L1"
11675 /experiment="experimental evidence, no additional details
11676 recorded"
11677 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11678 Region: WD 2"
11679 misc_feature 409..501
11680 /gene="RACK1"
11681 /gene_synonym="C12-3; c12.3; GNB2L1"
11682 /experiment="experimental evidence, no additional details
11683 recorded"
11684 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11685 Region: WD 3"
11686 misc_feature 538..636
11687 /gene="RACK1"
11688 /gene_synonym="C12-3; c12.3; GNB2L1"
11689 /experiment="experimental evidence, no additional details
11690 recorded"
11691 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11692 Region: WD 4"
11693 misc_feature 670..762
11694 /gene="RACK1"
11695 /gene_synonym="C12-3; c12.3; GNB2L1"
11696 /experiment="experimental evidence, no additional details
11697 recorded"
11698 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11699 Region: WD 5"
11700 misc_feature 784..786
11701 /gene="RACK1"
11702 /gene_synonym="C12-3; c12.3; GNB2L1"
11703 /experiment="experimental evidence, no additional details
11704 recorded"
11705 /note="Phosphotyrosine. {ECO:0000250}; propagated from
11706 UniProtKB/Swiss-Prot (P63247.1); phosphorylation site"
11707 misc_feature 793..882
11708 /gene="RACK1"
11709 /gene_synonym="C12-3; c12.3; GNB2L1"
11710 /experiment="experimental evidence, no additional details
11711 recorded"
11712 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11713 Region: WD 6"
11714 misc_feature 943..1035
11715 /gene="RACK1"
11716 /gene_synonym="C12-3; c12.3; GNB2L1"
11717 /experiment="experimental evidence, no additional details
11718 recorded"
11719 /note="propagated from UniProtKB/Swiss-Prot (P63247.1);
11720 Region: WD 7"
11721 ORIGIN
11722 1 ccctctttct ctttccgcgc tggcggccat cgcgggcggt aggaccggac cgggccgggc
11723 61 cctttattga atccgccgcc atccctccgc cccgccgccg ccatgacgga gcagatgacc
11724 121 ctccgcggta ccctgaaggg ccacaatggg tgggtgacgc agatcgccac caccccgcag
11725 181 ttcccggaca tgattctctc cgcgtcgcgg gacaaaacca tcatcatgtg gaagctgacc
11726 241 cgagatgaga ccaactacgg gatcccgcag cgcgccctgc gcggccactc gcactttgtc
11727 301 agcgatgtgg tcatctcctc cgatgggcag tttgcgctgt cgggctcctg ggatggcacc
11728 361 ctgaggctgt gggacctcac cacaggaacc accacccgcc gctttgttgg ccacaccaag
11729 421 gatgtgctga gcgtcgcctt ctcctccgac aaccgccaga tcgtttcggg ctccagggac
11730 481 aaaaccatca aactctggaa cactttgggt gtctgcaaat acacggtgca ggacgagagc
11731 541 cactctgagt gggtttcctg tgtgcgcttc tcccccaaca gcagcaaccc catcattgtc
11732 601 tcctgtggct gggacaagct ggtgaaggtt tggaacttgg ctaactgcaa actgaagaca
11733 661 aaccacatcg gccacacggg atatctgaac acagtgactg tctcccctga tggctccctc
11734 721 tgtgcttctg gaggcaagga cggccaggcc atgctgtggg acctgaatga aggcaagcac
11735 781 ctgtacacgc tggatggagg ggacatcatc aatgcgctgt gcttcagccc caaccgctac
11736 841 tggctctgcg ctgccaccgg ccccagcatc aagatctggg acctggaagg caaaatcatt
11737 901 gtggatgagc tgaagcagga ggtgatcagc accagcagca aagctgagcc tccccagtgc
11738 961 acctctctgg cgtggtctgc agatgggcag acgctgtttg ctggctacac agataacctc
11739 1021 gtccgggtgt ggcaagtcac cattggaacc agatgaggat gtggtaaaaa cacacagatt
11740 1081 ttatgcacaa aactcaataa aagagcgctc tgttgagctc atggctgcat tatatccca
11741 //
11742
11743 LOCUS NM_001201399 548 bp mRNA linear VRT 04-JAN-2017
11744 DEFINITION Gallus gallus defensin beta 4A (DEFB4A), transcript variant 2,
11745 mRNA.
11746 ACCESSION NM_001201399
11747 VERSION NM_001201399.1
11748 KEYWORDS RefSeq.
11749 SOURCE Gallus gallus (chicken)
11750 ORGANISM Gallus gallus
11751 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11752 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11753 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11754 Phasianidae; Phasianinae; Gallus.
11755 REFERENCE 1 (bases 1 to 548)
11756 AUTHORS Cuperus T, Coorens M, van Dijk A and Haagsman HP.
11757 TITLE Avian host defense peptides
11758 JOURNAL Dev. Comp. Immunol. 41 (3), 352-369 (2013)
11759 PUBMED 23644014
11760 REMARK Review article
11761 REFERENCE 2 (bases 1 to 548)
11762 AUTHORS Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
11763 Lalmanach AC.
11764 TITLE Differential modulation of beta-defensin gene expression by
11765 Salmonella Enteritidis in intestinal epithelial cells from
11766 resistant and susceptible chicken inbred lines
11767 JOURNAL Dev. Comp. Immunol. 33 (9), 959-966 (2009)
11768 PUBMED 19539093
11769 REMARK GeneRIF: intestinal epithelium express beta-defensin antimicrobial
11770 peptides that may play a role in immunoprotection against
11771 Salmonella Enteritidis.
11772 REFERENCE 3 (bases 1 to 548)
11773 AUTHORS Kannan L, Rath NC, Liyanage R and Lay JO Jr.
11774 TITLE Direct screening identifies mature beta-defensin 2 in avian
11775 heterophils
11776 JOURNAL Poult. Sci. 88 (2), 372-379 (2009)
11777 PUBMED 19151352
11778 REMARK GeneRIF: peptides are 36 amino acids long including a highly
11779 conserved region with 6 invariant cysteines forming the 3 disulfide
11780 bonds characteristic of defensins
11781 REFERENCE 4 (bases 1 to 548)
11782 AUTHORS Ahanda ML, Ruby T, Wittzell H, Bed'Hom B, Chausse AM, Morin V,
11783 Oudin A, Chevalier C, Young JR and Zoorob R.
11784 TITLE Non-coding RNAs revealed during identification of genes involved in
11785 chicken immune responses
11786 JOURNAL Immunogenetics 61 (1), 55-70 (2009)
11787 PUBMED 19009289
11788 REFERENCE 5 (bases 1 to 548)
11789 AUTHORS Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
11790 Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
11791 Lehrer,R.I.
11792 TITLE Avian beta-defensin nomenclature: a community proposed update
11793 JOURNAL Immunol. Lett. 110 (1), 86-89 (2007)
11794 PUBMED 17467809
11795 REFERENCE 6 (bases 1 to 548)
11796 AUTHORS Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
11797 TITLE Effects of age, egg-laying activity, and Salmonella-inoculation on
11798 the expressions of gallinacin mRNA in the vagina of the hen oviduct
11799 JOURNAL J. Reprod. Dev. 52 (2), 211-218 (2006)
11800 PUBMED 16394622
11801 REMARK GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
11802 laying hens increases with age but decreases in the regressed
11803 oviduct during the non-laying phase, and may increase in response
11804 to Salmonella enteritidis (SE) and lipopolysaccharide
11805 REFERENCE 7 (bases 1 to 548)
11806 AUTHORS Bar-Shira E and Friedman A.
11807 TITLE Development and adaptations of innate immunity in the
11808 gastrointestinal tract of the newly hatched chick
11809 JOURNAL Dev. Comp. Immunol. 30 (10), 930-941 (2006)
11810 PUBMED 16430960
11811 REMARK GeneRIF: Authors use expression of beta-defensins GAL1 and GLA2 to
11812 postulate in situ maturation of heterophils in hatchling gut
11813 tissue.
11814 REFERENCE 8 (bases 1 to 548)
11815 AUTHORS Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
11816 Zhang G.
11817 TITLE A genome-wide screen identifies a single beta-defensin gene cluster
11818 in the chicken: implications for the origin and evolution of
11819 mammalian defensins
11820 JOURNAL BMC Genomics 5 (1), 56 (2004)
11821 PUBMED 15310403
11822 REMARK GeneRIF: The chicken genome encodes only beta-defensins. The 13
11823 chicken beta-defensin genes are clustered densely within a 86-Kb
11824 distance on the chromosome 3q3.5-q3.7. The deduced peptides share
11825 the characteristic defensin motif.
11826 Publication Status: Online-Only
11827 REFERENCE 9 (bases 1 to 548)
11828 AUTHORS Brockus CW, Jackwood MW and Harmon BG.
11829 TITLE Characterization of beta-defensin prepropeptide mRNA from chicken
11830 and turkey bone marrow
11831 JOURNAL Anim. Genet. 29 (4), 283-289 (1998)
11832 PUBMED 9745666
11833 REFERENCE 10 (bases 1 to 548)
11834 AUTHORS Harwig SS, Swiderek KM, Kokryakov VN, Tan L, Lee TD, Panyutich EA,
11835 Aleshina GM, Shamova OV and Lehrer RI.
11836 TITLE Gallinacins: cysteine-rich antimicrobial peptides of chicken
11837 leukocytes
11838 JOURNAL FEBS Lett. 342 (3), 281-285 (1994)
11839 PUBMED 8150085
11840 COMMENT VALIDATED REFSEQ: This record has undergone validation or
11841 preliminary review. The reference sequence was derived from
11842 CF250963.1, AADN04000288.1, DQ858325.1 and AF033336.1.
11843
11844 Transcript Variant: This variant (2) differs in the 5' UTR compared
11845 to variant 1. Both variants 1 and 2 encode the same protein.
11846
11847 Sequence Note: This RefSeq record was created from transcripts of
11848 different strains and genomic sequence data because no single
11849 transcript from the same strain was available for the full length
11850 of the gene. The extent of this transcript is supported by
11851 transcript alignments and orthologous data.
11852
11853 ##Evidence-Data-START##
11854 Transcript exon combination :: CF250963.1 [ECO:0000332]
11855 RNAseq introns :: single sample supports all introns
11856 SAMEA2201383, SAMEA2812691
11857 [ECO:0000348]
11858 ##Evidence-Data-END##
11859 COMPLETENESS: complete on the 3' end.
11860 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
11861 1-157 CF250963.1 3-159
11862 158-158 AADN04000288.1 322558-322558 c
11863 159-200 CF250963.1 161-202
11864 201-201 DQ858325.1 50-50
11865 202-411 CF250963.1 204-413
11866 412-548 AF033336.1 287-423
11867 FEATURES Location/Qualifiers
11868 source 1..548
11869 /organism="Gallus gallus"
11870 /mol_type="mRNA"
11871 /db_xref="taxon:9031"
11872 /chromosome="3"
11873 /map="3"
11874 /breed="xinghua"
11875 gene 1..548
11876 /gene="DEFB4A"
11877 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
11878 /note="defensin beta 4A"
11879 /db_xref="CGNC:49507"
11880 /db_xref="GeneID:395840"
11881 misc_feature 128..130
11882 /gene="DEFB4A"
11883 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
11884 /note="upstream in-frame stop codon"
11885 CDS 152..346
11886 /gene="DEFB4A"
11887 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
11888 /note="gallinacin-2; antimicrobial peptide 2;
11889 beta-defensin 2 antimicrobial peptide; avian beta-defensin
11890 2"
11891 /codon_start=1
11892 /product="gallinacin-2 precursor"
11893 /protein_id="NP_001188328.1"
11894 /db_xref="CGNC:49507"
11895 /db_xref="GeneID:395840"
11896 /translation="MRILYLLFSLLFLALQASPGLSSPRRDMLFCKGGSCHFGGCPSH
11897 LIKVGSCFGFRSCCKWPWNA"
11898 sig_peptide 152..217
11899 /gene="DEFB4A"
11900 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
11901 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
11902 mat_peptide 236..343
11903 /gene="DEFB4A"
11904 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
11905 /product="Gallinacin-2"
11906 /experiment="experimental evidence, no additional details
11907 recorded"
11908 /note="propagated from UniProtKB/Swiss-Prot (P46158.2)"
11909 ORIGIN
11910 1 aaagccctct ggagggaaga gaccaagagg tgttctggtt tggcttttgg gctcatctaa
11911 61 tatccgctca gaagactgta gattccaggg actgcctgcc acatacattt cttcttcctt
11912 121 ttccctgtag cagctcagca gatctgcagc catgaggatt ctttacctgc ttttctctct
11913 181 cctcttcctg gcactccagg cttctccagg gttgtcttcg ccccggcggg acatgctgtt
11914 241 ctgtaaagga gggtcctgcc actttggagg gtgtcccagc catctaatca aagtcggaag
11915 301 ctgcttcggg ttccgttcct gctgcaaatg gccttggaat gcataaacac ttcatgagtc
11916 361 cattcaagag ctttgaaaat ttcttccagg catgtgcttt aaatgctaca gcaaagcctc
11917 421 agcagcaaga agacccctct catgtgttaa tgcaatatgt tttgtgttgt agagtaaata
11918 481 caaatatctt ctgcactgcc tttcttcctc ttgaataaat tgtcattgca tagcaaaaaa
11919 541 aaaaaaaa
11920 //
11921
11922 LOCUS NM_204992 484 bp mRNA linear VRT 04-JAN-2017
11923 DEFINITION Gallus gallus defensin beta 4A (DEFB4A), transcript variant 1,
11924 mRNA.
11925 ACCESSION NM_204992
11926 VERSION NM_204992.2
11927 KEYWORDS RefSeq.
11928 SOURCE Gallus gallus (chicken)
11929 ORGANISM Gallus gallus
11930 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
11931 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
11932 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
11933 Phasianidae; Phasianinae; Gallus.
11934 REFERENCE 1 (bases 1 to 484)
11935 AUTHORS Cuperus T, Coorens M, van Dijk A and Haagsman HP.
11936 TITLE Avian host defense peptides
11937 JOURNAL Dev. Comp. Immunol. 41 (3), 352-369 (2013)
11938 PUBMED 23644014
11939 REMARK Review article
11940 REFERENCE 2 (bases 1 to 484)
11941 AUTHORS Derache C, Esnault E, Bonsergent C, Le Vern Y, Quere P and
11942 Lalmanach AC.
11943 TITLE Differential modulation of beta-defensin gene expression by
11944 Salmonella Enteritidis in intestinal epithelial cells from
11945 resistant and susceptible chicken inbred lines
11946 JOURNAL Dev. Comp. Immunol. 33 (9), 959-966 (2009)
11947 PUBMED 19539093
11948 REMARK GeneRIF: intestinal epithelium express beta-defensin antimicrobial
11949 peptides that may play a role in immunoprotection against
11950 Salmonella Enteritidis.
11951 REFERENCE 3 (bases 1 to 484)
11952 AUTHORS Kannan L, Rath NC, Liyanage R and Lay JO Jr.
11953 TITLE Direct screening identifies mature beta-defensin 2 in avian
11954 heterophils
11955 JOURNAL Poult. Sci. 88 (2), 372-379 (2009)
11956 PUBMED 19151352
11957 REMARK GeneRIF: peptides are 36 amino acids long including a highly
11958 conserved region with 6 invariant cysteines forming the 3 disulfide
11959 bonds characteristic of defensins
11960 REFERENCE 4 (bases 1 to 484)
11961 AUTHORS Ahanda ML, Ruby T, Wittzell H, Bed'Hom B, Chausse AM, Morin V,
11962 Oudin A, Chevalier C, Young JR and Zoorob R.
11963 TITLE Non-coding RNAs revealed during identification of genes involved in
11964 chicken immune responses
11965 JOURNAL Immunogenetics 61 (1), 55-70 (2009)
11966 PUBMED 19009289
11967 REFERENCE 5 (bases 1 to 484)
11968 AUTHORS Lynn,D.J., Higgs,R., Lloyd,A.T., O'Farrelly,C., Herve-Grepinet,V.,
11969 Nys,Y., Brinkman,F.S., Yu,P.L., Soulier,A., Kaiser,P., Zhang,G. and
11970 Lehrer,R.I.
11971 TITLE Avian beta-defensin nomenclature: a community proposed update
11972 JOURNAL Immunol. Lett. 110 (1), 86-89 (2007)
11973 PUBMED 17467809
11974 REFERENCE 6 (bases 1 to 484)
11975 AUTHORS Yoshimura Y, Ohashi H, Subedi K, Nishibori M and Isobe N.
11976 TITLE Effects of age, egg-laying activity, and Salmonella-inoculation on
11977 the expressions of gallinacin mRNA in the vagina of the hen oviduct
11978 JOURNAL J. Reprod. Dev. 52 (2), 211-218 (2006)
11979 PUBMED 16394622
11980 REMARK GeneRIF: mRNA expression of Gal-1, -2 and -3 in the vagina of
11981 laying hens increases with age but decreases in the regressed
11982 oviduct during the non-laying phase, and may increase in response
11983 to Salmonella enteritidis (SE) and lipopolysaccharide
11984 REFERENCE 7 (bases 1 to 484)
11985 AUTHORS Bar-Shira E and Friedman A.
11986 TITLE Development and adaptations of innate immunity in the
11987 gastrointestinal tract of the newly hatched chick
11988 JOURNAL Dev. Comp. Immunol. 30 (10), 930-941 (2006)
11989 PUBMED 16430960
11990 REMARK GeneRIF: Authors use expression of beta-defensins GAL1 and GLA2 to
11991 postulate in situ maturation of heterophils in hatchling gut
11992 tissue.
11993 REFERENCE 8 (bases 1 to 484)
11994 AUTHORS Xiao Y, Hughes AL, Ando J, Matsuda Y, Cheng JF, Skinner-Noble D and
11995 Zhang G.
11996 TITLE A genome-wide screen identifies a single beta-defensin gene cluster
11997 in the chicken: implications for the origin and evolution of
11998 mammalian defensins
11999 JOURNAL BMC Genomics 5 (1), 56 (2004)
12000 PUBMED 15310403
12001 REMARK GeneRIF: The chicken genome encodes only beta-defensins. The 13
12002 chicken beta-defensin genes are clustered densely within a 86-Kb
12003 distance on the chromosome 3q3.5-q3.7. The deduced peptides share
12004 the characteristic defensin motif.
12005 Publication Status: Online-Only
12006 REFERENCE 9 (bases 1 to 484)
12007 AUTHORS Brockus CW, Jackwood MW and Harmon BG.
12008 TITLE Characterization of beta-defensin prepropeptide mRNA from chicken
12009 and turkey bone marrow
12010 JOURNAL Anim. Genet. 29 (4), 283-289 (1998)
12011 PUBMED 9745666
12012 REFERENCE 10 (bases 1 to 484)
12013 AUTHORS Harwig SS, Swiderek KM, Kokryakov VN, Tan L, Lee TD, Panyutich EA,
12014 Aleshina GM, Shamova OV and Lehrer RI.
12015 TITLE Gallinacins: cysteine-rich antimicrobial peptides of chicken
12016 leukocytes
12017 JOURNAL FEBS Lett. 342 (3), 281-285 (1994)
12018 PUBMED 8150085
12019 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12020 preliminary review. The reference sequence was derived from
12021 CF250963.1, AF033336.1, DQ858325.1 and BQ484799.1.
12022 On Jan 19, 2011 this sequence version replaced gi:45384507.
12023
12024 Transcript Variant: This variant (1) represents the shorter
12025 transcript. Both variants 1 and 2 encode the same protein.
12026
12027 Sequence Note: This RefSeq record was created from transcripts of
12028 different strains because no single transcript from the same strain
12029 was available for the full length of the gene. The extent of this
12030 transcript is supported by transcript alignments and orthologous
12031 data.
12032
12033 ##Evidence-Data-START##
12034 Transcript exon combination :: BQ484799.1, BU449525.1 [ECO:0000332]
12035 RNAseq introns :: single sample supports all introns
12036 SAMEA2201357, SAMEA2201358
12037 [ECO:0000348]
12038 ##Evidence-Data-END##
12039 COMPLETENESS: complete on the 3' end.
12040 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12041 1-60 CF250963.1 3-62
12042 61-136 AF033336.1 1-76
12043 137-137 DQ858325.1 50-50
12044 138-299 AF033336.1 78-239
12045 300-300 BQ484799.1 281-281
12046 301-484 AF033336.1 240-423
12047 FEATURES Location/Qualifiers
12048 source 1..484
12049 /organism="Gallus gallus"
12050 /mol_type="mRNA"
12051 /db_xref="taxon:9031"
12052 /chromosome="3"
12053 /map="3"
12054 /breed="xinghua"
12055 gene 1..484
12056 /gene="DEFB4A"
12057 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
12058 /note="defensin beta 4A"
12059 /db_xref="CGNC:49507"
12060 /db_xref="GeneID:395840"
12061 misc_feature 58..60
12062 /gene="DEFB4A"
12063 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
12064 /note="upstream in-frame stop codon"
12065 CDS 88..282
12066 /gene="DEFB4A"
12067 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
12068 /note="gallinacin-2; antimicrobial peptide 2;
12069 beta-defensin 2 antimicrobial peptide; avian beta-defensin
12070 2"
12071 /codon_start=1
12072 /product="gallinacin-2 precursor"
12073 /protein_id="NP_990323.2"
12074 /db_xref="CGNC:49507"
12075 /db_xref="GeneID:395840"
12076 /translation="MRILYLLFSLLFLALQASPGLSSPRRDMLFCKGGSCHFGGCPSH
12077 LIKVGSCFGFRSCCKWPWNA"
12078 sig_peptide 88..153
12079 /gene="DEFB4A"
12080 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
12081 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
12082 mat_peptide 172..279
12083 /gene="DEFB4A"
12084 /gene_synonym="AvBD2; GAL 2; gal-2; GAL2"
12085 /product="Gallinacin-2"
12086 /experiment="experimental evidence, no additional details
12087 recorded"
12088 /note="propagated from UniProtKB/Swiss-Prot (P46158.2)"
12089 ORIGIN
12090 1 aaagccctct ggagggaaga gaccaagagg tgttctggtt tggcttttgg gctcatctaa
12091 61 tatccgcagc tcagcagatc tgcagccatg aggattcttt acctgctttt ctctctcctc
12092 121 ttcctggcac tccaggcttc tccagggttg tcttcgcccc ggcgggacat gctgttctgt
12093 181 aaaggagggt cctgccactt tggagggtgt cccagccatc taatcaaagt cggaagctgc
12094 241 ttcgggttcc gttcctgctg caaatggcct tggaatgcat aaacacttca tgagtccatt
12095 301 caagagcttt gaaaatttct tccaggcatg tgctttaaat gctacagcaa agcctcagca
12096 361 gcaagaagac ccctctcatg tgttaatgca atatgttttg tgttgtagag taaatacaaa
12097 421 tatcttctgc actgcctttc ttcctcttga ataaattgtc attgcatagc aaaaaaaaaa
12098 481 aaaa
12099 //
12100
12101 LOCUS NM_001199613 934 bp mRNA linear VRT 04-JAN-2017
12102 DEFINITION Gallus gallus anterior gradient 3, protein disulphide isomerase
12103 family member (AGR3), mRNA.
12104 ACCESSION NM_001199613 XM_418699
12105 VERSION NM_001199613.1
12106 KEYWORDS RefSeq.
12107 SOURCE Gallus gallus (chicken)
12108 ORGANISM Gallus gallus
12109 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12110 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12111 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12112 Phasianidae; Phasianinae; Gallus.
12113 REFERENCE 1 (bases 1 to 934)
12114 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
12115 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
12116 TITLE A comprehensive collection of chicken cDNAs
12117 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
12118 PUBMED 12445392
12119 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12120 preliminary review. The reference sequence was derived from
12121 AADN04000095.1 and BU228146.1.
12122 On Dec 11, 2010 this sequence version replaced gi:118085898.
12123
12124 Sequence Note: This RefSeq record was created from transcripts from
12125 different strains and genomic sequence data because no single
12126 transcript from the same strain was available for the full length
12127 of the gene. The extent of this transcript is supported by
12128 transcript alignments and orthologous data.
12129
12130 ##Evidence-Data-START##
12131 RNAseq introns :: single sample supports all introns SAMN03354478,
12132 SAMN03354485 [ECO:0000348]
12133 ##Evidence-Data-END##
12134 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12135 1-106 AADN04000095.1 235528-235633
12136 107-209 BU228146.1 16-118
12137 210-210 AADN04000095.1 238485-238485
12138 211-593 BU228146.1 120-502
12139 594-934 AADN04000095.1 241999-242339
12140 FEATURES Location/Qualifiers
12141 source 1..934
12142 /organism="Gallus gallus"
12143 /mol_type="mRNA"
12144 /db_xref="taxon:9031"
12145 /chromosome="2"
12146 /map="2"
12147 /breed="Red Jungle Fowl"
12148 gene 1..934
12149 /gene="AGR3"
12150 /note="anterior gradient 3, protein disulphide isomerase
12151 family member"
12152 /db_xref="CGNC:13935"
12153 /db_xref="GeneID:420597"
12154 CDS 1..498
12155 /gene="AGR3"
12156 /note="anterior gradient protein 3 homolog; anterior
12157 gradient homolog 3"
12158 /codon_start=1
12159 /product="anterior gradient protein 3 precursor"
12160 /protein_id="NP_001186542.1"
12161 /db_xref="CGNC:13935"
12162 /db_xref="GeneID:420597"
12163 /translation="MLHSTLALSLLLIAVSSNLAMAIKKEKRTPQTLSRGWGDEITWV
12164 QTYEEGLYQAKKSNKPLMVIHHLEDCQYCQALKKAFAENEEIQEMAQDNFIMLNLMHE
12165 TTDKNLSPDGQYVPRIMFIDPSLTVRADITGRYSNRLYTYEPQDIPFLIENMKKALRL
12166 IQTEL"
12167 sig_peptide 1..66
12168 /gene="AGR3"
12169 /inference="COORDINATES: ab initio prediction:SignalP:4.0"
12170 ORIGIN
12171 1 atgctccatt caacattggc cttgtctctc ctgctaattg cagtctcatc caacctcgct
12172 61 atggcaatca aaaaggaaaa aagaacacct cagacgctat caagaggctg gggagatgaa
12173 121 ataacctggg tacaaactta tgaagaaggg ctttatcaag caaaaaaaag taacaagcca
12174 181 ctgatggtca ttcatcattt ggaagactgt caatactgcc aagcactgaa gaaagctttt
12175 241 gctgaaaatg aagagataca agaaatggcg caagataact tcattatgct gaatctcatg
12176 301 catgaaacca cagataaaaa cctgtcacct gatggacaat acgtgcctcg aatcatgttc
12177 361 atagacccat ctctcacggt gagagctgat atcacaggaa gatactctaa tcggctgtac
12178 421 acttacgaac cacaagacat accattctta atagaaaaca tgaagaaagc acttcgcctc
12179 481 attcagacag aactgtaatc aacagtgaaa tgatcatagc ctctagaagg cgaagctgca
12180 541 ccaagaattc caacattcta aaatatttta tttagcctct ttctctgcta tctatttgaa
12181 601 ctcttaccaa gcaggtaaac cagatttcat gagaaagtta tatgtatgat ttgaagagga
12182 661 aatataggag actatcatta ccatttggga aacagagaag aaatctatca aacagtttga
12183 721 agcagagtca gctacctgaa taattgaaag tgatggttta aggtgcaagc aactttgagt
12184 781 tgtatattat caattgaact gtagctttat tgtcagctac aacttccaat caagagctat
12185 841 agccaatact tcatgtctat ttacaataca tgatgtaagt tattagctac atcttacctc
12186 901 ctatttttta tttcatgtag cttgtaaatc ttta
12187 //
12188
12189 LOCUS NM_001199429 2333 bp mRNA linear VRT 04-JAN-2017
12190 DEFINITION Gallus gallus nephrocystin 1 (NPHP1), mRNA.
12191 ACCESSION NM_001199429 XM_419298
12192 VERSION NM_001199429.1
12193 KEYWORDS RefSeq.
12194 SOURCE Gallus gallus (chicken)
12195 ORGANISM Gallus gallus
12196 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12197 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12198 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12199 Phasianidae; Phasianinae; Gallus.
12200 REFERENCE 1 (bases 1 to 2333)
12201 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
12202 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
12203 TITLE A comprehensive collection of chicken cDNAs
12204 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
12205 PUBMED 12445392
12206 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12207 preliminary review. The reference sequence was derived from
12208 CN384177.1, AADN04000266.1, BU374887.1, BX935485.2, BX931832.2,
12209 BU434903.1 and BX271340.3.
12210 On Dec 9, 2010 this sequence version replaced gi:118087540.
12211
12212 Sequence Note: This RefSeq record was created from transcript and
12213 genomic sequence data because no single transcript from the same
12214 strain was available for the full length of the gene. The extent of
12215 this transcript is supported by transcript alignments and
12216 orthologous data.
12217
12218 ##Evidence-Data-START##
12219 RNAseq introns :: mixed/partial sample support SAMEA2201357,
12220 SAMEA2201358 [ECO:0000350]
12221 ##Evidence-Data-END##
12222 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12223 1-30 CN384177.1 1-30
12224 31-133 AADN04000266.1 617897-617999 c
12225 134-524 CN384177.1 134-524
12226 525-702 BU374887.1 104-281
12227 703-929 BX935485.2 1-227
12228 930-938 BX931832.2 510-518
12229 939-2132 BX935485.2 237-1430
12230 2133-2308 BU434903.1 498-673
12231 2309-2333 BX271340.3 583-607
12232 FEATURES Location/Qualifiers
12233 source 1..2333
12234 /organism="Gallus gallus"
12235 /mol_type="mRNA"
12236 /db_xref="taxon:9031"
12237 /chromosome="3"
12238 /map="3"
12239 /breed="Leghorn"
12240 gene 1..2333
12241 /gene="NPHP1"
12242 /gene_synonym="nephrocystin-1"
12243 /note="nephrocystin 1"
12244 /db_xref="CGNC:6212"
12245 /db_xref="GeneID:421223"
12246 misc_feature 50..52
12247 /gene="NPHP1"
12248 /gene_synonym="nephrocystin-1"
12249 /note="upstream in-frame stop codon"
12250 CDS 179..2224
12251 /gene="NPHP1"
12252 /gene_synonym="nephrocystin-1"
12253 /note="nephronophthisis 1 (juvenile)"
12254 /codon_start=1
12255 /product="nephrocystin-1"
12256 /protein_id="NP_001186358.1"
12257 /db_xref="CGNC:6212"
12258 /db_xref="GeneID:421223"
12259 /translation="MTGRRARSPLQRVQRQSRELRAQVEALRGEGADAAVGRRAALRQ
12260 RCFQLQKLVDENINTLHSLKKADEPAPVGNYNQRKEEEEKLLLKLSQQLQKFCHILDQ
12261 DNVATNDTVSEGRQKDPQREDKVKEEAESADDNGESSEEGESEETDEEDEDKLLDDPD
12262 VKECIAVGNFNAQQDGDLTFTKGEVLLIHDKKADGWWVAENSKGERGLVPRTYLAVHN
12263 EDEENQEESDEHIEVVDETADGTEIRKRTDSHWSAVRKAITESDTVEILATMGAVPTG
12264 FRLSTLSQLLEEGNQFRASYFLQPKLTPSQLAFKDLVWDSEKNTICPIPTRVSLIVTL
12265 CSCKTIPLPAASIQVLSRHVRLCLFDGNRVLSNIHTVRATWQPKNPQMWTFSPRVTGI
12266 LPSLLDGDCFVRSNSLSSDIGLLLELGITYIRNSTGERRELSCGWAFQKLFTSDGMPV
12267 PSKMYELLLNGGTPYERGVEVDPSLSRRAGSGVFHQLISLKKQPVLVVKLRSLSTQSK
12268 DILNLLPETLIGSMCYIHLLIFYRQILGDALLRDRINMQSAELICNPILATFPQLVDQ
12269 PDLMDALRSAWADRERTLKRSEKRDREFLKSVFILVYHDSAFPLLRSTLLPSYKWAEE
12270 ESEASRWRVIADFLRKSQEKDGALQSLLSAENTHTAFDISELAYDFLGETRKNNPTV"
12271 ORIGIN
12272 1 accgcgcggg ggtgaccgag cagcgcgctg gcggcacgaa cgggagcatt aaatcagtgc
12273 61 ttgtacgttg ggctcgcagc gtgtttctac accccgcccg cacaccgggc tcgggcccag
12274 121 agcgcgcggg ctcccggaag tgacgtcatt tccgagcgcc gcccgttgcc tagcgaccat
12275 181 gacggggcgg cgggcgcgca gcccgctgca gcgagtgcag cgacagagcc gggagctgcg
12276 241 ggcacaggtg gaagcgctgc ggggagaggg cgcggacgca gccgtcgggc ggcgagcggc
12277 301 cctgaggcag agatgttttc agctgcagaa actggtggat gagaatataa atactcttca
12278 361 tagtttgaaa aaagctgacg agcctgcacc tgtggggaac tataatcaga ggaaagaaga
12279 421 agaagaaaag ctattgctaa agttgtccca gcagctgcag aaattttgtc atatcttgga
12280 481 tcaggataat gtggctacaa atgacacagt gagcgaggga cgtcagaaag atcctcaaag
12281 541 agaagacaaa gttaaagaag aggctgagag tgctgatgac aatggagaaa gcagtgagga
12282 601 aggagaaagt gaagaaacag atgaggaaga tgaggataaa ttgttggatg atcctgatgt
12283 661 taaagaatgc attgcagtgg gaaactttaa tgcacagcag gacggggatc tcacatttac
12284 721 gaaaggtgaa gtcctgctta tacatgataa gaaggcggat ggctggtggg tagccgagaa
12285 781 ctcaaaaggg gagagaggcc tcgtgcctag aacctatctt gcggtccata atgaagatga
12286 841 agaaaaccaa gaggaaagtg atgaacacat agaagtggtg gatgaaacag cagatggtac
12287 901 tgaaattaga aaaagaacag actctcactg gagcgctgta agaaaagcta tcaccgagag
12288 961 tgacacagta gagatattgg caaccatggg agctgttcct acaggattcc gtctatccac
12289 1021 actttcccag ctcttagaag aaggtaatca gttcagagca agttacttct tgcagcctaa
12290 1081 acttactcca tcccagctgg cttttaaaga tttggtgtgg gactctgaaa aaaatactat
12291 1141 ctgtcctata ccaactcgag tatccctgat tgtaactcta tgtagctgta aaacgattcc
12292 1201 tctcccagca gccagtattc aggttctcag tagacacgtt cgactctgtc tattcgatgg
12293 1261 caatcgggta ctgagtaaca ttcatacagt gagagctacg tggcaaccta aaaaccctca
12294 1321 aatgtggacc ttttctccaa gggtaacagg cattttaccc agcttactgg atggtgactg
12295 1381 ctttgtcagg tccaattcct tatcttcaga cattggttta ctacttgaac ttggcatcac
12296 1441 ttacattcgc aactcaacag gtgaacgacg agagctaagc tgtggctggg catttcagaa
12297 1501 gctttttact tctgatggaa tgcctgttcc ttccaaaatg tatgagctgc tattaaatgg
12298 1561 tggtactcct tatgagagag gtgttgaggt tgacccatca ctatcaagga gagcaggcag
12299 1621 tggtgttttt catcagctta tatcactcaa gaagcagcca gtgcttgtag tgaaactgag
12300 1681 gtcattaagc acacagtcaa aggacatcct gaatttgtta ccagaaacat taattggcag
12301 1741 tatgtgctac atccatctct tgatatttta tcgacaaata cttggtgatg cactcctgag
12302 1801 agacagaata aacatgcaaa gtgcagaatt aatctgtaat cctattttag caacttttcc
12303 1861 tcaactcgtg gatcagccag acctgatgga tgcactgcgg agtgcttggg cggacagaga
12304 1921 aagaactttg aagagatcag aaaagagaga tcgagaattc ctgaagtctg tgttcatcct
12305 1981 ggtgtaccat gactcagcct tccctctcct ccggtccact ttgctcccca gctacaagtg
12306 2041 ggcagaggag gagtccgaag cgtctcgctg gagagtgatt gctgacttcc tgagaaagag
12307 2101 ccaagagaaa gatggtgccc ttcagtctct gctgtccgca gaaaacactc acacagcctt
12308 2161 tgacatctca gagctggcct atgatttctt gggagaaacg aggaaaaata atcccacagt
12309 2221 atgaatggat tgtaggataa caatatagat aaatttttac caaagagaaa ttatgtgtac
12310 2281 tgtctgaatt gcaagaaata ttttcacaca ttaaaaataa cattttgagg gag
12311 //
12312
12313 LOCUS NM_001195561 781 bp mRNA linear VRT 04-JAN-2017
12314 DEFINITION Gallus gallus prolyl-tRNA synthetase associated domain containing
12315 1, pseudogene (PRORSD1P), mRNA.
12316 ACCESSION NM_001195561 XM_419287
12317 VERSION NM_001195561.1
12318 KEYWORDS RefSeq.
12319 SOURCE Gallus gallus (chicken)
12320 ORGANISM Gallus gallus
12321 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12322 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12323 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12324 Phasianidae; Phasianinae; Gallus.
12325 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12326 preliminary review. The reference sequence was derived from
12327 AADN04000361.1.
12328 On Sep 17, 2010 this sequence version replaced gi:118087490.
12329
12330 Sequence Note: The RefSeq transcript and protein were derived from
12331 genomic sequence to make the sequence consistent with the reference
12332 genome assembly. The genomic coordinates used for the transcript
12333 record were based on alignments.
12334
12335 ##Evidence-Data-START##
12336 Transcript exon combination :: BX929534.2, BU227122.1 [ECO:0000332]
12337 RNAseq introns :: single sample supports all introns
12338 SAMEA2201357, SAMEA2201358
12339 [ECO:0000348]
12340 ##Evidence-Data-END##
12341 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12342 1-102 AADN04000361.1 689096-689197 c
12343 103-781 AADN04000361.1 688074-688752 c
12344 FEATURES Location/Qualifiers
12345 source 1..781
12346 /organism="Gallus gallus"
12347 /mol_type="mRNA"
12348 /db_xref="taxon:9031"
12349 /chromosome="3"
12350 /map="3"
12351 /breed="Red Jungle Fowl"
12352 gene 1..781
12353 /gene="PRORSD1P"
12354 /gene_synonym="PRORSD1"
12355 /note="prolyl-tRNA synthetase associated domain containing
12356 1, pseudogene"
12357 /db_xref="CGNC:51437"
12358 /db_xref="GeneID:421212"
12359 CDS 16..540
12360 /gene="PRORSD1P"
12361 /gene_synonym="PRORSD1"
12362 /codon_start=1
12363 /product="PrdX-deacylase domain 1"
12364 /protein_id="NP_001182490.1"
12365 /db_xref="CGNC:51437"
12366 /db_xref="GeneID:421212"
12367 /translation="MAAAPGLREALEQRLRDLGIAATTTEHPEVFTVEEMMAHVQHLK
12368 GGHSKNLFLKDKKRKEFWLVTVLHDRQVDLNHLAKKLGVGSGNLRFADENAMLEKLQV
12369 GQGCATPLALFCDHGDVRLVLDAGFLEGGHEKVYFHPMTNGATMGLSPEDFLKFVKST
12370 GHDPIVVHFDEDIK"
12371 ORIGIN
12372 1 cgggaaagtg gtggcatggc ggcggcgccg gggctgcggg aggcgctgga gcagcggttg
12373 61 cgggatttgg gcatcgctgc caccaccacg gagcacccgg aggtgttcac ggttgaagaa
12374 121 atgatggccc acgtccaaca cttgaaagga gggcacagta aaaacctttt ccttaaagac
12375 181 aaaaagagga aagagttctg gctggtgact gtcctgcacg acaggcaggt ggatttaaac
12376 241 catctggcaa aaaaacttgg cgttggaagt ggaaacctga gatttgctga tgaaaacgcc
12377 301 atgctggaga agctccaggt gggccaaggc tgtgccacac cgctggctct gttctgtgac
12378 361 cacggagatg tgaggttggt gctggatgcc ggcttcctgg agggcggcca tgaaaaggtg
12379 421 tattttcatc caatgacaaa tggtgcgacc atgggcttaa gccctgagga cttcctgaag
12380 481 tttgtgaaat cgacaggcca cgatccaatc gtcgtgcatt ttgatgaaga cattaaatag
12381 541 ggtcacatgg ctcggtgttg atgttatagc gcaaaactgg tgggagtctc gtgataaata
12382 601 cagcttggaa gaacagggct gctcttttgt acagtgtaac atttagtgta agaaaatact
12383 661 acacttgggt tactgaaaat tcaacagaat attcttgaga agatgtctgc aatctgccag
12384 721 catccagcat gatgaaaagg cattatataa ataataatat gttaataaaa tgcataaagt
12385 781 g
12386 //
12387
12388 LOCUS NM_001195424 3105 bp mRNA linear VRT 04-JAN-2017
12389 DEFINITION Gallus gallus ubiquitin conjugating enzyme E2 E3 (UBE2E3), mRNA.
12390 ACCESSION NM_001195424 XM_421975
12391 VERSION NM_001195424.1
12392 KEYWORDS RefSeq.
12393 SOURCE Gallus gallus (chicken)
12394 ORGANISM Gallus gallus
12395 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12396 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12397 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12398 Phasianidae; Phasianinae; Gallus.
12399 REFERENCE 1 (bases 1 to 3105)
12400 AUTHORS Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R,
12401 Burnside J, Aggrey SE, Simon J and Cogburn LA.
12402 TITLE Chicken genomics resource: sequencing and annotation of 35,407 ESTs
12403 from single and multiple tissue cDNA libraries and CAP3 assembly of
12404 a chicken gene index
12405 JOURNAL Physiol. Genomics 25 (3), 514-524 (2006)
12406 PUBMED 16554550
12407 REFERENCE 2 (bases 1 to 3105)
12408 AUTHORS Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong
12409 WT, Tickle C, Brown WR, Wilson SA and Hubbard SJ.
12410 TITLE A comprehensive collection of chicken cDNAs
12411 JOURNAL Curr. Biol. 12 (22), 1965-1969 (2002)
12412 PUBMED 12445392
12413 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12414 preliminary review. The reference sequence was derived from
12415 AADN04000048.1, CD217623.1, BU110886.1 and DR431499.1.
12416 On Sep 10, 2010 this sequence version replaced gi:118093495.
12417
12418 Sequence Note: This RefSeq record was created from transcript and
12419 genomic sequence data to make the sequence consistent with the
12420 reference genome assembly. The genomic coordinates used for the
12421 transcript record were based on transcript alignments.
12422
12423 ##Evidence-Data-START##
12424 Transcript exon combination :: BU442557.1, BU365019.1 [ECO:0000332]
12425 RNAseq introns :: single sample supports all introns
12426 SAMEA2201366 [ECO:0000348]
12427 ##Evidence-Data-END##
12428 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12429 1-4 AADN04000048.1 6785597-6785600 c
12430 5-267 CD217623.1 129-391
12431 268-691 BU110886.1 173-596
12432 692-3088 AADN04000048.1 6730619-6733015 c
12433 3089-3105 DR431499.1 3-19 c
12434 FEATURES Location/Qualifiers
12435 source 1..3105
12436 /organism="Gallus gallus"
12437 /mol_type="mRNA"
12438 /db_xref="taxon:9031"
12439 /chromosome="7"
12440 /map="7"
12441 /breed="Red Jungle Fowl"
12442 gene 1..3105
12443 /gene="UBE2E3"
12444 /gene_synonym="yeast)"
12445 /note="ubiquitin conjugating enzyme E2 E3"
12446 /db_xref="CGNC:14325"
12447 /db_xref="GeneID:424122"
12448 CDS 13..636
12449 /gene="UBE2E3"
12450 /gene_synonym="yeast)"
12451 /EC_number="6.3.2.19"
12452 /note="ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog,
12453 yeast)"
12454 /codon_start=1
12455 /product="ubiquitin-conjugating enzyme E2 E3"
12456 /protein_id="NP_001182353.1"
12457 /db_xref="CGNC:14325"
12458 /db_xref="GeneID:424122"
12459 /translation="MSSDRQRSDDESPSTSSGSSDADQRDPPAPEPEEQEERKPSATQ
12460 QKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPG
12461 SVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTIS
12462 KVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT"
12463 STS 839..1133
12464 /gene="UBE2E3"
12465 /gene_synonym="yeast)"
12466 /standard_name="T03564"
12467 /db_xref="UniSTS:72354"
12468 ORIGIN
12469 1 aagttcccca cgatgtccag tgacaggcag aggtcggacg atgagagccc cagtaccagc
12470 61 agcggcagct cagacgccga ccagagggac cccccggcac ctgaacctga ggagcaggag
12471 121 gaaaggaaac cctctgccac ccaacagaag aagaacacca aactctccag caaaactact
12472 181 gctaagctat ctactagtgc taaaagaatc cagaaggagc tagctgaaat aactcttgat
12473 241 cctcctccta actgcagtgc cggccctaaa ggagataaca tttatgaatg gagatcaact
12474 301 atacttggac ctccgggttc tgtatatgag gggggcgttt ttttcctgga tatcacattt
12475 361 tcatctgact atccattcaa gccaccaaag gttactttcc gcaccagaat ttatcactgc
12476 421 aacatcaaca gtcagggagt catctgtctg gatatcctga aggacaactg gagccctgct
12477 481 ttgactattt caaaggtcct gctgtctatt tgttctcttt tgacagactg caacccggct
12478 541 gatcctctgg ttggaagcat agccactcag tatctgacca acagagcaga acatgacagg
12479 601 atagccagac agtggaccaa gagatatgca acataaacaa caaactactt gtgcagtgtg
12480 661 aaggtgcaga aggcaacttt acagtgtgca acaaatcttt atagccttta caatacggac
12481 721 ttctgtgtat atgttatact gattctactc tgcttttatc cttttgaaga ctgggatact
12482 781 gcctcccaaa aaggtaaatg ctatcaagag tagaaatttg tagctgtaga ttagttatgt
12483 841 ttaaaatgcc tacttgcaag tcttgcttct ttgggatatc aaaatgtatt ttgtgatgta
12484 901 ctaaggatac tgttcctgaa gtcaaccaaa tattatagtg cattttagcc taattcatta
12485 961 tctgtatgaa gttattaaag gtagctgtag attactagga attatgtcat ttgtattaaa
12486 1021 cccagatcta tttccaatat gtggtacatg ctgttgtgga aactgtttta acttttacct
12487 1081 ttgtcagttt gtaatgaaag gatttccttt ttccctttgt agctcagaga gcacccagtg
12488 1141 tatcatctca aacacaataa acatgttccc caaggagtag tttctttgtt ttcctatttt
12489 1201 aaattaatat ttgaaaaaat ttaattatag taacaaggca gggctaatgt atcacagatc
12490 1261 cctgtggata atctttaaat taatatacat aagcaaaggc ttgctattaa atgtttaatg
12491 1321 cacacctgtg gattgtgtaa gttttccctg ggttttttgg tttgatttgg ttttattttt
12492 1381 acagaacaaa tgccattccc atattttcct taactgctca gctctttttc aagttgcaat
12493 1441 gagagcaccg catatgcttc ctccaaaagc taatgtagct ggttgcttca gggccagacc
12494 1501 tgttcttgta atagatggcc tggtcttgct acaaactcct ttttgcagga ccagagccca
12495 1561 gttacagata gtctggtgct tttgtgtcag agtaaagcaa gtcaggcttg ctaatctgga
12496 1621 gaaccacagt tgtccactga aaatggtctt ccaaagcatg gttaaacact agtctgtcca
12497 1681 gaagagaaag gagtagaata aacttcatca gatttttatg acagaaaaaa accagttgtg
12498 1741 ggggaaatta acctttgtta ctgaaaatgc aagatgtaaa acttttagac tacttttccc
12499 1801 cctcacctct tcactttctg gcgtggaaat ttttgtaaca tctgtaagta atgaagatgc
12500 1861 agctttatag cacatacagt ggaatcacca atagttttat aattcagctt ttgtaggttg
12501 1921 ccagtcacac catcgattat acaaaaagag atttgatccc tttaaatgat ttttaaaatt
12502 1981 acacctgatt ttcaagttta ctgtcccctt tactacctgg tgtttttgga gataatgtag
12503 2041 cacttccatc agtaggatgc tctgctcact taatatatga aaaatgaatg ttaagtttaa
12504 2101 ataataaagc aatagaaaaa atgttaaaga ttaaatctaa agttagccat cactatatag
12505 2161 atccctgttt tttgtatcac aacctttgat catgaattgt ccaccctact ttaaatattt
12506 2221 ctacagattc ctgaaggtgg cttgaagaac tgcgtatccc aaatatctca acctagaagc
12507 2281 cagtctctct tggtagctac aagatagctt tagacttcag gttataaagt gcaaaaggga
12508 2341 atgagaaaca ggggatctgg caggtgaata tgcctaagtc gggtaacaga ctaatgccag
12509 2401 gaaatgaagt gctggaaatc actgctgatg gtgaccagag tttctcattg tgtcgttgaa
12510 2461 catgtgagaa atagcacaga ttggcaaagc aacaaggggc tatcgcatcc gggctggaca
12511 2521 tctacggtct gctcactgct gtccagtagt gcactgctgt gctgcgcagt gctcgtacac
12512 2581 cactccggtg actttccagt gaagagcaaa ctatgtattt catgtgttaa ttatgttgcc
12513 2641 tacagaattt acagatattt atatcatgaa ataatatggt ataaagaaag acaggtttta
12514 2701 attctaattt taatgtattt tgtttttgta ttgtactgac aacttcatct actgaggtgt
12515 2761 acaaatgtga tgcctcgtca gtgttgcccc atcttgcctt ccttgcaatt ggatccttta
12516 2821 cactgaattc tcatcctttt tcttctcttt tttttccttt ctttctttct ttcttttttt
12517 2881 ttttttttgt tgttgttggt ttgtcatcat tctgttcttt tttaatgtag tttttttgtg
12518 2941 tgtaaatttt atatttactg aagtaaaggt tgtttttgtg taaacattta aactttaaga
12519 3001 aagaaaaaag aaaagctaat tttgtttctc aagttctctc tgctaaaaca tgcagtagaa
12520 3061 agaaatttgt attgttaaat aaatcaatta gttgttaaat gcgaa
12521 //
12522
12523 LOCUS NM_001111014 4041 bp mRNA linear VRT 04-JAN-2017
12524 DEFINITION Gallus gallus glutamate ionotropic receptor AMPA type subunit 2
12525 (GRIA2), transcript variant 2, mRNA.
12526 ACCESSION NM_001111014
12527 VERSION NM_001111014.2
12528 KEYWORDS RefSeq.
12529 SOURCE Gallus gallus (chicken)
12530 ORGANISM Gallus gallus
12531 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12532 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12533 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12534 Phasianidae; Phasianinae; Gallus.
12535 REFERENCE 1 (bases 1 to 4041)
12536 AUTHORS Yoon YJ, White SL, Ni X, Gokin AP and Martin-Caraballo M.
12537 TITLE Downregulation of GluA2 AMPA receptor subunits reduces the
12538 dendritic arborization of developing spinal motoneurons
12539 JOURNAL PLoS ONE 7 (11), E49879 (2012)
12540 PUBMED 23226228
12541 REMARK GeneRIF: Increased GluA2 expression and changes in the Ca(2+)
12542 permeability of AMPA receptors regulate the dendritic arborization
12543 of spinal cord motoneurons during embryonic development.
12544 REFERENCE 2 (bases 1 to 4041)
12545 AUTHORS Ni X, Sullivan GJ and Martin-Caraballo M.
12546 TITLE Developmental characteristics of AMPA receptors in chick lumbar
12547 motoneurons
12548 JOURNAL Dev Neurobiol 67 (11), 1419-1432 (2007)
12549 PUBMED 17497695
12550 REMARK GeneRIF: These findings raise the possibility that Ca2+ influx
12551 through Ca(2+)-permeable AMPA receptors plays an important role
12552 during early embryonic development in chick spinal motoneurons.
12553 REFERENCE 3 (bases 1 to 4041)
12554 AUTHORS Migues PV, Cammarota M, Kavanagh J, Atkinson R, Powis DA and Rostas
12555 JA.
12556 TITLE Maturational changes in the subunit composition of AMPA receptors
12557 and the functional consequences of their activation in chicken
12558 forebrain
12559 JOURNAL Dev. Neurosci. 29 (3), 232-240 (2007)
12560 PUBMED 17047319
12561 REMARK GeneRIF: Ca(2+) uptake in response to AMPA receptor activation
12562 decreases dramatically during maturation in chicken brain
12563 microslices without a change in tissue AMPA receptor content
12564 REFERENCE 4 (bases 1 to 4041)
12565 AUTHORS Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
12566 HS, Cho BW and Han JY.
12567 TITLE Analysis of chicken embryonic gonad expressed sequenced tags
12568 JOURNAL Anim. Genet. 37 (1), 85-86 (2006)
12569 PUBMED 16441308
12570 REFERENCE 5 (bases 1 to 4041)
12571 AUTHORS Mendieta J, Gago F and Ramirez G.
12572 TITLE Binding of 5'-GMP to the GluR2 AMPA receptor: insight from targeted
12573 molecular dynamics simulations
12574 JOURNAL Biochemistry 44 (44), 14470-14476 (2005)
12575 PUBMED 16262247
12576 REMARK GeneRIF: Results show that 5'GMP appears to be a false agonist
12577 rather than a competitive antagonist of the GluR2 receptor.
12578 REFERENCE 6 (bases 1 to 4041)
12579 AUTHORS Aruscavage PJ and Bass BL.
12580 TITLE A phylogenetic analysis reveals an unusual sequence conservation
12581 within introns involved in RNA editing
12582 JOURNAL RNA 6 (2), 257-269 (2000)
12583 PUBMED 10688364
12584 REFERENCE 7 (bases 1 to 4041)
12585 AUTHORS Ravindranathan A, Parks TN and Rao MS.
12586 TITLE Flip and flop isoforms of chick brain AMPA receptor subunits:
12587 cloning and analysis of expression patterns
12588 JOURNAL Neuroreport 7 (15-17), 2707-2711 (1996)
12589 PUBMED 8981452
12590 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12591 preliminary review. The reference sequence was derived from
12592 X89508.1, U59706.1, CV862778.1, CR385667.1, DR431149.1 and
12593 CR353879.1.
12594 On Jun 4, 2010 this sequence version replaced gi:161377424.
12595
12596 Transcript Variant: This variant (2) uses an alternate exon in the
12597 3' coding region compared to transcript variant 1, and encodes an
12598 isoform (2, also known as flop isoform) that is the same length as
12599 isoform 1, but with few amino acid differences. RNA editing
12600 (CAG->CGG) changes Gln607Arg.
12601
12602 ##Evidence-Data-START##
12603 RNAseq introns :: single sample supports all introns SAMEA2201363,
12604 SAMEA2201366 [ECO:0000348]
12605 ##Evidence-Data-END##
12606
12607 ##RefSeq-Attributes-START##
12608 undergoes RNA editing :: PMID: 10688364
12609 ##RefSeq-Attributes-END##
12610 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12611 1-2504 X89508.1 1-2504
12612 2505-2793 U59706.1 415-703
12613 2794-2880 X89508.1 2794-2880
12614 2881-3398 CV862778.1 172-689
12615 3399-3744 CR385667.1 444-789
12616 3745-3882 DR431149.1 710-847
12617 3883-4041 CR353879.1 112-270
12618 FEATURES Location/Qualifiers
12619 source 1..4041
12620 /organism="Gallus gallus"
12621 /mol_type="mRNA"
12622 /db_xref="taxon:9031"
12623 /chromosome="4"
12624 /map="4"
12625 /breed="Leghorn"
12626 gene 1..4041
12627 /gene="GRIA2"
12628 /gene_synonym="GLUR2"
12629 /note="glutamate ionotropic receptor AMPA type subunit 2"
12630 /db_xref="CGNC:7152"
12631 /db_xref="GeneID:414894"
12632 CDS 216..2867
12633 /gene="GRIA2"
12634 /gene_synonym="GLUR2"
12635 /note="isoform 2 precursor is encoded by transcript
12636 variant 2; AMPA glutamate receptor 2; AMPA receptor
12637 GluR2/B; glutamate receptor B flip isoform; glutamate
12638 receptor, ionotropic, AMPA 2"
12639 /codon_start=1
12640 /product="glutamate receptor 2 isoform 2 precursor"
12641 /protein_id="NP_001104484.1"
12642 /db_xref="CGNC:7152"
12643 /db_xref="GeneID:414894"
12644 /translation="MQKIMHISVCLAPVLWGLIWGAHSNSIQIGGLFPRGADQEYSAF
12645 RVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKKSVNTITS
12646 FCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWTKFAYLYDSDRGLST
12647 LQAVLDSAAEKKWQVTAINVGNINNDRKDETYRSLFQDLEVKKERRVILDCERDKVND
12648 IVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSGFQIVDYDDPLVSKFIQR
12649 WSTLEEKEYPGAHTSTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANP
12650 AVPWGHGVEIERALKQVQVEGLTGNIKFDQNGKRINFTINVMELKSTGPRKIGYWSEV
12651 DKMVVNPLDGPLGNESSGLENKTIIVTTILESPYVMMKKNHEMLEGNDRYEGYCVDLA
12652 TEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREE
12653 VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR
12654 FSPYEWHTEEFEDGRETQTNESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGG
12655 VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR
12656 SKIAVFDKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD
12657 TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGG
12658 GDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNIN
12659 PTSSQNSQNFATYKEGYNVYGIESVKI"
12660 sig_peptide 216..278
12661 /gene="GRIA2"
12662 /gene_synonym="GLUR2"
12663 mat_peptide 279..2864
12664 /gene="GRIA2"
12665 /gene_synonym="GLUR2"
12666 /product="glutamate receptor 2 isoform 2"
12667 misc_feature 2035
12668 /gene="GRIA2"
12669 /gene_synonym="GLUR2"
12670 /note="RNA editing at nt 2035 (CAG->CGG) changes
12671 Gln607Arg; Region: RNA editing site"
12672 STS 2869..3118
12673 /gene="GRIA2"
12674 /gene_synonym="GLUR2"
12675 /standard_name="SHGC-67298"
12676 /db_xref="UniSTS:89435"
12677 ORIGIN
12678 1 agagcggcgg aggcagctcg ggaacggtgt ctcccgctcg cggtgcccgg cctcggcctc
12679 61 gcctccctgc ccagggtctg ctcgcagccc ccggccgctc gaccggcgtg cggaggatcg
12680 121 aattcggcgg cggcggagga aggaaggaaa gaaagaagga aggaagaaag aagcgccgtt
12681 181 tctgtggctt tgtggatgct ctccttttcc tggaaatgca aaagattatg catatttctg
12682 241 tctgcctggc tcccgtgttg tggggactga tctggggggc ccattccaac agcatacaga
12683 301 tcggggggct gttcccgagg ggcgccgacc aggagtacag cgcgttccgg gtgggcatgg
12684 361 tgcagttctc cacctccgag ttcaggctca ctccccacat cgacaacctg gaggttgcca
12685 421 acagcttcgc cgtcaccaac gccttctgct cccagttttc cagaggagtc tttgctattt
12686 481 ttggattcta tgataagaag tctgtaaaca ccataacatc cttctgtggg actcttcatg
12687 541 tctccttcat aactccgagc ttcccgacag atggaacaca cccatttgtc attcagatga
12688 601 gacctgacct caagggagct ctccttagtt tgattgaata ctatcagtgg accaagtttg
12689 661 catatttata tgacagcgac agagggttat caacattgca agctgtgctg gattctgcag
12690 721 ctgaaaagaa gtggcaagtg actgctatca atgtaggaaa tattaacaat gacagaaaag
12691 781 atgaaaccta ccgttctcta tttcaagatc tagaagtgaa aaaggaaagg agagtgattt
12692 841 tggactgtga gcgtgataaa gtcaacgaca ttgttgatca ggtcatcaca attggtaaac
12693 901 atgttaaagg ataccattat attattgcaa atctgggatt tactgatgga gatttatcca
12694 961 aaattcagtt tggaggagct aatgtctcag gatttcagat agttgactat gatgatcctt
12695 1021 tggtgtcaaa atttatacaa cgttggtcaa cactggagga aaaagaatat cctggtgcac
12696 1081 acactagtac aataaagtat acatctgctc tgacctatga tgctgtgcaa gtgatgacag
12697 1141 aagctttccg taatttgcgt aaacagagga ttgagatctc cagaagagga aatgctggag
12698 1201 attgtcttgc aaatccagct gtaccctggg gtcatggtgt agaaatagaa agggcattga
12699 1261 aacaggttca ggtggaaggt ctaacaggga atataaagtt tgatcagaat ggaaagagaa
12700 1321 tcaattttac gataaatgtc atggaactca aaagtactgg ccctcggaag attggatatt
12701 1381 ggagtgaagt ggacaaaatg gttgtgaatc cacttgatgg ccctcttgga aatgaatctt
12702 1441 caggactaga aaataagact attattgtca ccactatttt ggagtcccca tatgttatga
12703 1501 tgaagaaaaa tcatgaaatg cttgaaggaa atgatcgata tgagggctat tgtgtggacc
12704 1561 tagctacaga aattgctaag cactgtggat tcaaatataa gctcacaatt gttggggatg
12705 1621 gcaagtatgg ggcaagggat gcagatacga aaatatggaa tgggatggtt ggagaacttg
12706 1681 tttatgggaa agctgatatt gcaattgctc cattaactat aacattggtg agagaagagg
12707 1741 tgattgactt ctcaaagccc tttatgagcc tggggatatc aataatgatc aagaaacctc
12708 1801 agaagtccaa gccaggagtg ttttcatttc ttgatccatt agcatatgaa atctggatgt
12709 1861 gcattgtttt tgcctacatt ggggtcagtg tagttttatt cctggtcagc agatttagtc
12710 1921 cgtacgagtg gcacacagag gaatttgaag atggaagaga aacacagact aatgaatcaa
12711 1981 ctaatgagtt tgggatattt aatagtctct ggttttccct gggtgccttt atgcggcaag
12712 2041 gatgcgatat ttcgccaaga tccctgtctg ggcgcattgt tggaggtgtg tggtggttct
12713 2101 ttaccctcat cataatctca tcctacacgg ctaacttagc tgccttcctg acggttgaga
12714 2161 ggatggtgtc tcccattgaa agtgcagagg atctttccaa gcaaacagaa attgcatatg
12715 2221 ggacattaga ttctggctcc actaaagagt tttttaggag atctaaaatt gcagtgtttg
12716 2281 ataaaatgtg gacctatatg aaaagtgcag agccatctgt gtttgtgagg actacagcag
12717 2341 aaggggtagc tcgagtacgg aagtccaaag gaaaatatgc ctacttgttg gagtcaacca
12718 2401 tgaatgagta catcgaacaa aggaaaccct gtgataccat gaaagttggt gggaatttgg
12719 2461 attccaaagg ctacggcatc gccacaccta aaggatcctc attaagaaat gcggttaacc
12720 2521 tcgcagtact aaaactgaat gaacaaggcc tgttggacaa attgaaaaac aaatggtggt
12721 2581 acgacaaagg agagtgcggc agcgggggag gtgattccaa ggagaagacc agtgccctca
12722 2641 gtctgagcaa cgtggcagga gtcttctata ttctcgtcgg gggacttggc ttggcaatgc
12723 2701 tggtggcttt gattgagttc tgttacaagt cgagagctga ggcgaagaga atgaaggtgg
12724 2761 caaagaacgc acagaatatt aacccaactt cctcacagaa ttcacagaat tttgcaactt
12725 2821 ataaggaagg ttacaacgta tatggaatcg aaagtgttaa aatttagggg atgaccttga
12726 2881 atgatgccat gaggagcaag gcaaggctgt cgatttcagg aagtactgga gaaaatggac
12727 2941 atgttatggc tccagaattt ccaaaagcag tgcatgcagt accttatgtg agtcctggca
12728 3001 tgagaatgaa tgtcagtgtg actgatctct cgtgattgat aagaaccttt tgagtgcctt
12729 3061 acacaatggt tttcttgtgc gtttattgtc aaagtggtga gaggcatcca gtatcttgaa
12730 3121 gacttttctt tcagccaaga attcttacat ttgtggagtt catcttggat tataatgaat
12731 3181 gattaattca aaacacaaca ccattttcta cacaacttca agatgaagct tgactgacat
12732 3241 gcacagctaa catggaagta ctgtattcta actgaagtcg ttgtacaggc aacacaccag
12733 3301 tttctgcagc caccgttgtt agttccttgg ttcatattga cttaagcaca cttgacatca
12734 3361 attgcatcaa gatgtgacat gttttataag aaaaaaaaga aaaagaaaca tttaaaaatg
12735 3421 aaaaaaaata tttttaggta ttttcacaaa caaaaactgg cttttaaata aatttgcttc
12736 3481 cataatggtt acatatgaca gataaaaaga aacaaaggaa tctagactgc ggggaagtgg
12737 3541 aatattgaaa caaggcttaa ggcatccgtt ccatattttt caaagccaaa tatgtaatgt
12738 3601 tgagaagaga agaaataata attaggaggt tcaaatcttg taatttagta ttgttattaa
12739 3661 aattttgctg tatatcctat tctttaacat ttggtgttaa tatcaaatta cttggcaatg
12740 3721 cttgacattt gaaataaact ttttctatgg ttttatttgc aagtgttcca ttaattttac
12741 3781 tagctacagt tagattataa agagtctaaa atgtaaaagg acactgtcaa ggttgggtta
12742 3841 atattttaga ttctgacagt gtcgctattc ccagctcatt tgaatcagtt cagctttttt
12743 3901 ttctgtggat gaacccaagc tgtgatgctc aaatacgcat tttgaactct gaagaacaag
12744 3961 gttgctctgg gttggagtgg tacttcatac cagcacatga ggagtcagac aggtgctgat
12745 4021 tcagaatcca gctcctctta a
12746 //
12747
12748 LOCUS NM_001001775 4041 bp mRNA linear VRT 04-JAN-2017
12749 DEFINITION Gallus gallus glutamate ionotropic receptor AMPA type subunit 2
12750 (GRIA2), transcript variant 1, mRNA.
12751 ACCESSION NM_001001775 XM_420381
12752 VERSION NM_001001775.3
12753 KEYWORDS RefSeq.
12754 SOURCE Gallus gallus (chicken)
12755 ORGANISM Gallus gallus
12756 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12757 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12758 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12759 Phasianidae; Phasianinae; Gallus.
12760 REFERENCE 1 (bases 1 to 4041)
12761 AUTHORS Yoon YJ, White SL, Ni X, Gokin AP and Martin-Caraballo M.
12762 TITLE Downregulation of GluA2 AMPA receptor subunits reduces the
12763 dendritic arborization of developing spinal motoneurons
12764 JOURNAL PLoS ONE 7 (11), E49879 (2012)
12765 PUBMED 23226228
12766 REMARK GeneRIF: Increased GluA2 expression and changes in the Ca(2+)
12767 permeability of AMPA receptors regulate the dendritic arborization
12768 of spinal cord motoneurons during embryonic development.
12769 REFERENCE 2 (bases 1 to 4041)
12770 AUTHORS Ni X, Sullivan GJ and Martin-Caraballo M.
12771 TITLE Developmental characteristics of AMPA receptors in chick lumbar
12772 motoneurons
12773 JOURNAL Dev Neurobiol 67 (11), 1419-1432 (2007)
12774 PUBMED 17497695
12775 REMARK GeneRIF: These findings raise the possibility that Ca2+ influx
12776 through Ca(2+)-permeable AMPA receptors plays an important role
12777 during early embryonic development in chick spinal motoneurons.
12778 REFERENCE 3 (bases 1 to 4041)
12779 AUTHORS Migues PV, Cammarota M, Kavanagh J, Atkinson R, Powis DA and Rostas
12780 JA.
12781 TITLE Maturational changes in the subunit composition of AMPA receptors
12782 and the functional consequences of their activation in chicken
12783 forebrain
12784 JOURNAL Dev. Neurosci. 29 (3), 232-240 (2007)
12785 PUBMED 17047319
12786 REMARK GeneRIF: Ca(2+) uptake in response to AMPA receptor activation
12787 decreases dramatically during maturation in chicken brain
12788 microslices without a change in tissue AMPA receptor content
12789 REFERENCE 4 (bases 1 to 4041)
12790 AUTHORS Shin JH, Kim H, Lim D, Jeon M, Han BK, Park TS, Kim JK, Lillehoj
12791 HS, Cho BW and Han JY.
12792 TITLE Analysis of chicken embryonic gonad expressed sequenced tags
12793 JOURNAL Anim. Genet. 37 (1), 85-86 (2006)
12794 PUBMED 16441308
12795 REFERENCE 5 (bases 1 to 4041)
12796 AUTHORS Mendieta J, Gago F and Ramirez G.
12797 TITLE Binding of 5'-GMP to the GluR2 AMPA receptor: insight from targeted
12798 molecular dynamics simulations
12799 JOURNAL Biochemistry 44 (44), 14470-14476 (2005)
12800 PUBMED 16262247
12801 REMARK GeneRIF: Results show that 5'GMP appears to be a false agonist
12802 rather than a competitive antagonist of the GluR2 receptor.
12803 REFERENCE 6 (bases 1 to 4041)
12804 AUTHORS Aruscavage PJ and Bass BL.
12805 TITLE A phylogenetic analysis reveals an unusual sequence conservation
12806 within introns involved in RNA editing
12807 JOURNAL RNA 6 (2), 257-269 (2000)
12808 PUBMED 10688364
12809 REFERENCE 7 (bases 1 to 4041)
12810 AUTHORS Ravindranathan A, Parks TN and Rao MS.
12811 TITLE Flip and flop isoforms of chick brain AMPA receptor subunits:
12812 cloning and analysis of expression patterns
12813 JOURNAL Neuroreport 7 (15-17), 2707-2711 (1996)
12814 PUBMED 8981452
12815 COMMENT VALIDATED REFSEQ: This record has undergone validation or
12816 preliminary review. The reference sequence was derived from
12817 X89508.1, U59706.1, CV862778.1, CR385667.1, DR431149.1 and
12818 CR353879.1.
12819 On Jun 4, 2010 this sequence version replaced gi:161377422.
12820
12821 Transcript Variant: This variant (1) encodes isoform 1 (also known
12822 as flip isoform). RNA editing (CAG->CGG) changes Gln607Arg.
12823
12824 ##Evidence-Data-START##
12825 Transcript exon combination :: X89508.1 [ECO:0000332]
12826 RNAseq introns :: single sample supports all introns
12827 SAMEA2201363, SAMEA2201366
12828 [ECO:0000348]
12829 ##Evidence-Data-END##
12830
12831 ##RefSeq-Attributes-START##
12832 undergoes RNA editing :: PMID: 10688364
12833 ##RefSeq-Attributes-END##
12834 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
12835 1-2504 X89508.1 1-2504
12836 2505-2506 U59706.1 415-416
12837 2507-2880 X89508.1 2507-2880
12838 2881-3398 CV862778.1 172-689
12839 3399-3744 CR385667.1 444-789
12840 3745-3882 DR431149.1 710-847
12841 3883-4041 CR353879.1 112-270
12842 FEATURES Location/Qualifiers
12843 source 1..4041
12844 /organism="Gallus gallus"
12845 /mol_type="mRNA"
12846 /db_xref="taxon:9031"
12847 /chromosome="4"
12848 /map="4"
12849 /breed="Leghorn"
12850 gene 1..4041
12851 /gene="GRIA2"
12852 /gene_synonym="GLUR2"
12853 /note="glutamate ionotropic receptor AMPA type subunit 2"
12854 /db_xref="CGNC:7152"
12855 /db_xref="GeneID:414894"
12856 CDS 216..2867
12857 /gene="GRIA2"
12858 /gene_synonym="GLUR2"
12859 /note="isoform 1 precursor is encoded by transcript
12860 variant 1; AMPA glutamate receptor 2; AMPA receptor
12861 GluR2/B; glutamate receptor B flip isoform; glutamate
12862 receptor, ionotropic, AMPA 2"
12863 /codon_start=1
12864 /product="glutamate receptor 2 isoform 1 precursor"
12865 /protein_id="NP_001001775.2"
12866 /db_xref="CGNC:7152"
12867 /db_xref="GeneID:414894"
12868 /translation="MQKIMHISVCLAPVLWGLIWGAHSNSIQIGGLFPRGADQEYSAF
12869 RVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKKSVNTITS
12870 FCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWTKFAYLYDSDRGLST
12871 LQAVLDSAAEKKWQVTAINVGNINNDRKDETYRSLFQDLEVKKERRVILDCERDKVND
12872 IVDQVITIGKHVKGYHYIIANLGFTDGDLSKIQFGGANVSGFQIVDYDDPLVSKFIQR
12873 WSTLEEKEYPGAHTSTIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANP
12874 AVPWGHGVEIERALKQVQVEGLTGNIKFDQNGKRINFTINVMELKSTGPRKIGYWSEV
12875 DKMVVNPLDGPLGNESSGLENKTIIVTTILESPYVMMKKNHEMLEGNDRYEGYCVDLA
12876 TEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREE
12877 VIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR
12878 FSPYEWHTEEFEDGRETQTNESTNEFGIFNSLWFSLGAFMRQGCDISPRSLSGRIVGG
12879 VWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR
12880 SKIAVFDKMWTYMKSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCD
12881 TMKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKD
12882 SGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNIN
12883 PTSSQNSQNFATYKEGYNVYGIESVKI"
12884 sig_peptide 216..278
12885 /gene="GRIA2"
12886 /gene_synonym="GLUR2"
12887 mat_peptide 279..2864
12888 /gene="GRIA2"
12889 /gene_synonym="GLUR2"
12890 /product="glutamate receptor 2 isoform 1"
12891 misc_feature 2035
12892 /gene="GRIA2"
12893 /gene_synonym="GLUR2"
12894 /note="RNA editing at nt 2035 (CAG->CGG) changes
12895 Gln607Arg; Region: RNA editing site"
12896 STS 2869..3118
12897 /gene="GRIA2"
12898 /gene_synonym="GLUR2"
12899 /standard_name="SHGC-67298"
12900 /db_xref="UniSTS:89435"
12901 ORIGIN
12902 1 agagcggcgg aggcagctcg ggaacggtgt ctcccgctcg cggtgcccgg cctcggcctc
12903 61 gcctccctgc ccagggtctg ctcgcagccc ccggccgctc gaccggcgtg cggaggatcg
12904 121 aattcggcgg cggcggagga aggaaggaaa gaaagaagga aggaagaaag aagcgccgtt
12905 181 tctgtggctt tgtggatgct ctccttttcc tggaaatgca aaagattatg catatttctg
12906 241 tctgcctggc tcccgtgttg tggggactga tctggggggc ccattccaac agcatacaga
12907 301 tcggggggct gttcccgagg ggcgccgacc aggagtacag cgcgttccgg gtgggcatgg
12908 361 tgcagttctc cacctccgag ttcaggctca ctccccacat cgacaacctg gaggttgcca
12909 421 acagcttcgc cgtcaccaac gccttctgct cccagttttc cagaggagtc tttgctattt
12910 481 ttggattcta tgataagaag tctgtaaaca ccataacatc cttctgtggg actcttcatg
12911 541 tctccttcat aactccgagc ttcccgacag atggaacaca cccatttgtc attcagatga
12912 601 gacctgacct caagggagct ctccttagtt tgattgaata ctatcagtgg accaagtttg
12913 661 catatttata tgacagcgac agagggttat caacattgca agctgtgctg gattctgcag
12914 721 ctgaaaagaa gtggcaagtg actgctatca atgtaggaaa tattaacaat gacagaaaag
12915 781 atgaaaccta ccgttctcta tttcaagatc tagaagtgaa aaaggaaagg agagtgattt
12916 841 tggactgtga gcgtgataaa gtcaacgaca ttgttgatca ggtcatcaca attggtaaac
12917 901 atgttaaagg ataccattat attattgcaa atctgggatt tactgatgga gatttatcca
12918 961 aaattcagtt tggaggagct aatgtctcag gatttcagat agttgactat gatgatcctt
12919 1021 tggtgtcaaa atttatacaa cgttggtcaa cactggagga aaaagaatat cctggtgcac
12920 1081 acactagtac aataaagtat acatctgctc tgacctatga tgctgtgcaa gtgatgacag
12921 1141 aagctttccg taatttgcgt aaacagagga ttgagatctc cagaagagga aatgctggag
12922 1201 attgtcttgc aaatccagct gtaccctggg gtcatggtgt agaaatagaa agggcattga
12923 1261 aacaggttca ggtggaaggt ctaacaggga atataaagtt tgatcagaat ggaaagagaa
12924 1321 tcaattttac gataaatgtc atggaactca aaagtactgg ccctcggaag attggatatt
12925 1381 ggagtgaagt ggacaaaatg gttgtgaatc cacttgatgg ccctcttgga aatgaatctt
12926 1441 caggactaga aaataagact attattgtca ccactatttt ggagtcccca tatgttatga
12927 1501 tgaagaaaaa tcatgaaatg cttgaaggaa atgatcgata tgagggctat tgtgtggacc
12928 1561 tagctacaga aattgctaag cactgtggat tcaaatataa gctcacaatt gttggggatg
12929 1621 gcaagtatgg ggcaagggat gcagatacga aaatatggaa tgggatggtt ggagaacttg
12930 1681 tttatgggaa agctgatatt gcaattgctc cattaactat aacattggtg agagaagagg
12931 1741 tgattgactt ctcaaagccc tttatgagcc tggggatatc aataatgatc aagaaacctc
12932 1801 agaagtccaa gccaggagtg ttttcatttc ttgatccatt agcatatgaa atctggatgt
12933 1861 gcattgtttt tgcctacatt ggggtcagtg tagttttatt cctggtcagc agatttagtc
12934 1921 cgtacgagtg gcacacagag gaatttgaag atggaagaga aacacagact aatgaatcaa
12935 1981 ctaatgagtt tgggatattt aatagtctct ggttttccct gggtgccttt atgcggcaag
12936 2041 gatgcgatat ttcgccaaga tccctgtctg ggcgcattgt tggaggtgtg tggtggttct
12937 2101 ttaccctcat cataatctca tcctacacgg ctaacttagc tgccttcctg acggttgaga
12938 2161 ggatggtgtc tcccattgaa agtgcagagg atctttccaa gcaaacagaa attgcatatg
12939 2221 ggacattaga ttctggctcc actaaagagt tttttaggag atctaaaatt gcagtgtttg
12940 2281 ataaaatgtg gacctatatg aaaagtgcag agccatctgt gtttgtgagg actacagcag
12941 2341 aaggggtagc tcgagtacgg aagtccaaag gaaaatatgc ctacttgttg gagtcaacca
12942 2401 tgaatgagta catcgaacaa aggaaaccct gtgataccat gaaagttggt gggaatttgg
12943 2461 attccaaagg ctacggcatc gccacaccta aaggatcctc attaagaacc ccagtaaatc
12944 2521 ttgcagtatt gaaactcagt gagcaaggcg tcttagacaa gctgaaaaac aaatggtggt
12945 2581 acgataaagg tgaatgtgga gccaaggact ctggaagtaa ggagaagacc agtgccctca
12946 2641 gtctgagcaa cgtggcagga gtcttctata ttctcgtcgg gggacttggc ttggcaatgc
12947 2701 tggtggcttt gattgagttc tgttacaagt cgagagctga ggcgaagaga atgaaggtgg
12948 2761 caaagaacgc acagaatatt aacccaactt cctcacagaa ttcacagaat tttgcaactt
12949 2821 ataaggaagg ttacaacgta tatggaatcg aaagtgttaa aatttagggg atgaccttga
12950 2881 atgatgccat gaggagcaag gcaaggctgt cgatttcagg aagtactgga gaaaatggac
12951 2941 atgttatggc tccagaattt ccaaaagcag tgcatgcagt accttatgtg agtcctggca
12952 3001 tgagaatgaa tgtcagtgtg actgatctct cgtgattgat aagaaccttt tgagtgcctt
12953 3061 acacaatggt tttcttgtgc gtttattgtc aaagtggtga gaggcatcca gtatcttgaa
12954 3121 gacttttctt tcagccaaga attcttacat ttgtggagtt catcttggat tataatgaat
12955 3181 gattaattca aaacacaaca ccattttcta cacaacttca agatgaagct tgactgacat
12956 3241 gcacagctaa catggaagta ctgtattcta actgaagtcg ttgtacaggc aacacaccag
12957 3301 tttctgcagc caccgttgtt agttccttgg ttcatattga cttaagcaca cttgacatca
12958 3361 attgcatcaa gatgtgacat gttttataag aaaaaaaaga aaaagaaaca tttaaaaatg
12959 3421 aaaaaaaata tttttaggta ttttcacaaa caaaaactgg cttttaaata aatttgcttc
12960 3481 cataatggtt acatatgaca gataaaaaga aacaaaggaa tctagactgc ggggaagtgg
12961 3541 aatattgaaa caaggcttaa ggcatccgtt ccatattttt caaagccaaa tatgtaatgt
12962 3601 tgagaagaga agaaataata attaggaggt tcaaatcttg taatttagta ttgttattaa
12963 3661 aattttgctg tatatcctat tctttaacat ttggtgttaa tatcaaatta cttggcaatg
12964 3721 cttgacattt gaaataaact ttttctatgg ttttatttgc aagtgttcca ttaattttac
12965 3781 tagctacagt tagattataa agagtctaaa atgtaaaagg acactgtcaa ggttgggtta
12966 3841 atattttaga ttctgacagt gtcgctattc ccagctcatt tgaatcagtt cagctttttt
12967 3901 ttctgtggat gaacccaagc tgtgatgctc aaatacgcat tttgaactct gaagaacaag
12968 3961 gttgctctgg gttggagtgg tacttcatac cagcacatga ggagtcagac aggtgctgat
12969 4021 tcagaatcca gctcctctta a
12970 //
12971
12972 LOCUS NM_001167726 3766 bp mRNA linear VRT 04-JAN-2017
12973 DEFINITION Gallus gallus REL proto-oncogene, NF-kB subunit (REL), mRNA.
12974 ACCESSION NM_001167726 XM_419277
12975 VERSION NM_001167726.1
12976 KEYWORDS RefSeq.
12977 SOURCE Gallus gallus (chicken)
12978 ORGANISM Gallus gallus
12979 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
12980 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
12981 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
12982 Phasianidae; Phasianinae; Gallus.
12983 REFERENCE 1 (bases 1 to 3766)
12984 AUTHORS Gupta N, Delrow J, Drawid A, Sengupta AM, Fan G and Gelinas C.
12985 TITLE Repression of B-cell linker (BLNK) and B-cell adaptor for
12986 phosphoinositide 3-kinase (BCAP) is important for lymphocyte
12987 transformation by rel proteins
12988 JOURNAL Cancer Res. 68 (3), 808-814 (2008)
12989 PUBMED 18245482
12990 REFERENCE 2 (bases 1 to 3766)
12991 AUTHORS Agudo D, Gomez-Esquer F, Diaz-Gil G, Martinez-Arribas F, Delcan J,
12992 Schneider J, Palomar MA and Linares R.
12993 TITLE Proteomic analysis of the Gallus gallus embryo at stage-29 of
12994 development
12995 JOURNAL Proteomics 5 (18), 4946-4957 (2005)
12996 PUBMED 16287166
12997 REMARK Erratum:[Proteomics. 2006 Apr;6(7):2326. Agudo Garcillan, David
12998 [corrected to Agudo, David]]
12999 REFERENCE 3 (bases 1 to 3766)
13000 AUTHORS Phelps CB and Ghosh G.
13001 TITLE Discreet mutations from c-Rel to v-Rel alter kappaB DNA
13002 recognition, IkappaBalpha binding, and dimerization: implications
13003 for v-Rel oncogenicity
13004 JOURNAL Oncogene 23 (6), 1229-1238 (2004)
13005 PUBMED 14961076
13006 REMARK GeneRIF: Alterations between v-Rel and c-Rel locate within the Rel
13007 homology region (RHR) of the family that might confer functional
13008 differences.
13009 REFERENCE 4 (bases 1 to 3766)
13010 AUTHORS Huang DB, Chen YQ, Ruetsche M, Phelps CB and Ghosh G.
13011 TITLE X-ray crystal structure of proto-oncogene product c-Rel bound to
13012 the CD28 response element of IL-2
13013 JOURNAL Structure 9 (8), 669-678 (2001)
13014 PUBMED 11587641
13015 REFERENCE 5 (bases 1 to 3766)
13016 AUTHORS You M, Ku PT, Hrdlickova R and Bose HR Jr.
13017 TITLE ch-IAP1, a member of the inhibitor-of-apoptosis protein family, is
13018 a mediator of the antiapoptotic activity of the v-Rel oncoprotein
13019 JOURNAL Mol. Cell. Biol. 17 (12), 7328-7341 (1997)
13020 PUBMED 9372964
13021 REFERENCE 6 (bases 1 to 3766)
13022 AUTHORS Kabrun N, Bumstead N, Hayman MJ and Enrietto PJ.
13023 TITLE Characterization of a novel promoter insertion in the c-rel locus
13024 JOURNAL Mol. Cell. Biol. 10 (9), 4788-4794 (1990)
13025 PUBMED 2167440
13026 REFERENCE 7 (bases 1 to 3766)
13027 AUTHORS Capobianco AJ, Simmons DL and Gilmore TD.
13028 TITLE Cloning and expression of a chicken c-rel cDNA: unlike p59v-rel,
13029 p68c-rel is a cytoplasmic protein in chicken embryo fibroblasts
13030 JOURNAL Oncogene 5 (3), 257-265 (1990)
13031 PUBMED 2179815
13032 REFERENCE 8 (bases 1 to 3766)
13033 AUTHORS Hannink M and Temin HM.
13034 TITLE Transactivation of gene expression by nuclear and cytoplasmic rel
13035 proteins
13036 JOURNAL Mol. Cell. Biol. 9 (10), 4323-4336 (1989)
13037 PUBMED 2555689
13038 COMMENT VALIDATED REFSEQ: This record has undergone validation or
13039 preliminary review. The reference sequence was derived from
13040 AJ445799.1, M26381.1 and AADN04000360.1.
13041 On Nov 18, 2009 this sequence version replaced gi:118087506.
13042
13043 Sequence Note: This RefSeq record was created from transcript and
13044 genomic sequence data to make the sequence consistent with the
13045 reference genome assembly. The genomic coordinates used for the
13046 transcript record were based on transcript alignments.
13047
13048 ##Evidence-Data-START##
13049 RNAseq introns :: single sample supports all introns SAMEA2201357,
13050 SAMEA2201361 [ECO:0000348]
13051 ##Evidence-Data-END##
13052 COMPLETENESS: complete on the 3' end.
13053 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
13054 1-687 AJ445799.1 2-688
13055 688-1059 M26381.1 567-938
13056 1060-1062 AADN04000360.1 406936-406938 c
13057 1063-1340 M26381.1 942-1219
13058 1341-3766 AADN04000360.1 403578-406003 c
13059 FEATURES Location/Qualifiers
13060 source 1..3766
13061 /organism="Gallus gallus"
13062 /mol_type="mRNA"
13063 /db_xref="taxon:9031"
13064 /chromosome="3"
13065 /map="3"
13066 gene 1..3766
13067 /gene="REL"
13068 /gene_synonym="p68-c-rel"
13069 /note="REL proto-oncogene, NF-kB subunit"
13070 /db_xref="CGNC:5934"
13071 /db_xref="GeneID:396500"
13072 CDS 113..1909
13073 /gene="REL"
13074 /gene_synonym="p68-c-rel"
13075 /note="C-Rel proto-oncogene protein; C-Rel protein; p68;
13076 v-rel avian reticuloendotheliosis viral oncogene homolog"
13077 /codon_start=1
13078 /product="proto-oncogene c-Rel"
13079 /protein_id="NP_001161198.1"
13080 /db_xref="CGNC:5934"
13081 /db_xref="GeneID:396500"
13082 /translation="MAGISEPYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNK
13083 TFPSIQILNYFGKVKIRTTLVTKNEPYKPHPHDLVGKDCRDGYYEAEFGPERRVLSFQ
13084 NLGIQCVKKKDLKESISLRISKKINPFNVPEEQLHNIDEYDLNVVRLCFQAFLPDEHG
13085 NYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFLLCDKVQKDDIEVR
13086 FVLDNWEAKGSFSQADVHRQVAIVFRTPPFLRDITEPITVKMQLRRPSDQEVSEPMDF
13087 RYLPDEKDPYGNKAKRQRSTLAWQKLIQDCGSAVTERPKAVPIPTVNPEGKLIKKEPN
13088 MFSPTLMLPGLGTLTSSSQMYPPCSQMPHQPAQLGPGKQDTLPSCWQQLFSSSPSASS
13089 LLSMHPHNSFTAEVPQPSAQGSSSLPAFHDNPLNWPDEKDSSFYRNFGSTNGMGAAMV
13090 SAADMQSASSNSIVHATHQASATAASIVNMETNDMNCTSLNFEKYTQVLNVSNHRQQL
13091 HQAPAACPPVAAPGSTPFSSQPNLADTAVYNSFLDQEVISDSRLSTNPLQNHQNSLTL
13092 TDNQFYDTDGVHTDELYQSFQLDTNILQSYNH"
13093 misc_feature 908..910
13094 /gene="REL"
13095 /gene_synonym="p68-c-rel"
13096 /experiment="experimental evidence, no additional details
13097 recorded"
13098 /note="Phosphoserine, by PKA. {ECO:0000255}; propagated
13099 from UniProtKB/Swiss-Prot (P16236.2); phosphorylation
13100 site"
13101 misc_feature 977..994
13102 /gene="REL"
13103 /gene_synonym="p68-c-rel"
13104 /experiment="experimental evidence, no additional details
13105 recorded"
13106 /note="propagated from UniProtKB/Swiss-Prot (P16236.2);
13107 Region: Nuclear localization signal. {ECO:0000255}"
13108 ORIGIN
13109 1 gagtagggtg gtgagcgggt ggagaggcag ggttgagccc gtttgtgcga ggtgcgggcc
13110 61 cggagggcag tccgcggcgg cagggcccga gcagcgacgc ggagctgtca gcatggcggg
13111 121 tatctcagag ccctacattg aaatatttga acaacccagg caaaggggca tgcgtttcag
13112 181 atacaaatgt gaaggaagat cagcaggtag cattccagga gaacacagta ctgacaacaa
13113 241 caagacattc ccatctatac agattctgaa ctattttgga aaagtcaaaa taagaactac
13114 301 attggtaaca aagaatgaac cctacaagcc acaccctcat gatctagttg gaaaagactg
13115 361 cagagatggc tactatgaag cagagtttgg gcctgaacgt cgagtcctgt cttttcagaa
13116 421 tttgggaatt caatgtgtga agaagaaaga cctgaaagaa tcaatttctt tgcgaatctc
13117 481 aaagaagatc aaccccttta atgtgcctga agaacagctg cacaacatcg atgaatatga
13118 541 tctcaacgtt gtccgcctct gtttccaagc tttcctccct gatgaacatg gcaactacac
13119 601 attagctctt cctcctttga tttccaaccc aatctatgac aacagagctc ccaacacagc
13120 661 agaactgaga atttgccgtg tgaataagaa ctgtggaagt gtaaagggag gagatgaaat
13121 721 ttttcttctg tgtgataaag ttcaaaaaga tgacatagaa gtcagatttg tcttggacaa
13122 781 ctgggaggca aaaggctcct tctcccaagc tgatgttcat cgccaggttg caattgtgtt
13123 841 cagaacaccg ccattcctca gagacatcac agaacccatc acggtgaaga tgcagttacg
13124 901 aagaccttca gaccaggaag tcagtgaacc aatggatttc agatacctac cagatgaaaa
13125 961 ggatccatat ggtaacaaag caaaaaggca aagatcaacg ctggcctggc aaaagctcat
13126 1021 acaggactgt ggatcagctg tgacagagag gccaaaagca gttccaatcc ccactgtcaa
13127 1081 ccctgaagga aagctgatta agaaagaacc aaatatgttt tcacctacac tgatgctgcc
13128 1141 tgggctagga acgctgacga gctccagcca gatgtaccct ccatgcagcc agatgcccca
13129 1201 ccagcctgcg cagcttggcc ctggaaagca ggacacactc ccttcctgct ggcagcagct
13130 1261 gttcagctcc tccccttcag ccagcagcct gctcagcatg cacccgcaca acagcttcac
13131 1321 agcagaagtg cctcagccca gtgctcaggg cagtagctct ctcccagctt tccacgataa
13132 1381 cccactgaac tggcctgatg agaaggattc cagtttttac aggaattttg gcagcacaaa
13133 1441 tgggatggga gcagcgatgg tgtcagctgc ggatatgcag agtgcttcca gtaacagcat
13134 1501 cgtccatgcc actcatcagg ccagtgccac tgctgcgagc atcgtgaaca tggagaccaa
13135 1561 tgacatgaac tgcactagtc tcaactttga aaagtatact caggtgttaa atgtaagcaa
13136 1621 ccacaggcag cagctccatc aggcacctgc agcatgtcca cctgtggcag cccctggcag
13137 1681 cactcccttc agttcacaac caaatttagc tgatacagca gtttacaaca gctttctaga
13138 1741 ccaagaagtt ataagtgatt caagactatc aaccaaccct ctccagaacc atcagaacag
13139 1801 ccttaccctt acagataacc agttctatga caccgatggt gtccacactg atgagctcta
13140 1861 tcagtctttc cagttagata caaacatatt acaaagctat aaccattgag ccggcactag
13141 1921 gctgaggtag gcacacagag ctttacgaag gagtaactca cccttctgct ttctctttca
13142 1981 gaatgctact gtgtaaatct cacggtgtaa cttaaagttt tttatatata tatatatatc
13143 2041 cgtcagcccc caaactgttg cccttgaaga agcatttgag gtgttgtacc ttcaaagctc
13144 2101 ttaaacattt ttatggtgtt ggaaaaagga attacttaaa gcattgggaa gaaaagctgg
13145 2161 tatcttcaga agggtcaaat tttcaataat tcacagggtt aatactgttt ggaaataaaa
13146 2221 cattttgcta tggaaattaa attaacattt caaaaggaca aactaggaaa aaactgcatg
13147 2281 tgggcactct agttcagact cacctaacat ttatgtttta ttcaacttgc ttgaaagatt
13148 2341 taggtttctt accctctttc gcataaaata tttttctcct aaaacaaaat catgcattga
13149 2401 tttttttttt ctatatttca ccgcattcca tttgctttca aggcaaattt actctaaaga
13150 2461 aatttaatga ctatgtcatt gttagatatg ttttaaagac cggaaggttt gagtttttaa
13151 2521 atagtccagc tctcttgtaa atgcatcact gcacaaaaga atgagcagaa agtaaggact
13152 2581 tctctgcact tcatcccaag tgcactattt taaatgataa aaccctgttg ctttaggaat
13153 2641 ggagcatgct gttatttctc tggaatttgt tttttttctt tgtgtgtgtg tgtgtgtgtg
13154 2701 tgtgtagcca tgatgtgcat tttattttga actgcagaaa tgtattgagc cgaagcacct
13155 2761 acctggtcct tcctcagatg gcccagcagt ttcctgctat gcaagtgact gctgaagggc
13156 2821 tcaggtctgg ctccctagca cccctcacag gaggaggtga aatgcagccc actcccagtg
13157 2881 cgttgtatga acagtgtgag gctgttccaa tcagtgtcaa ttaaaaacag cctccagtcc
13158 2941 gcggtatcaa gaaccagaac ttcctctctt ctgctagctt cccagtctcc actctgaggc
13159 3001 ctgaggtgtg agatgtccag tgacacctcg cataggtatc tggctaggta aggcactcaa
13160 3061 gtctgcatta tagggctttg ctattttatt actaatgtac gaagcaacac agcaagaaac
13161 3121 atactggtgt atttatttat acagctggtt attgtggcag ataaggctta agaaccttat
13162 3181 ttttactgtc tggctatcta aaaatgcacc ctggaaaaaa gcaataaata gcacacttgg
13163 3241 atacataggg aacagaaacc gcaaccacaa gacaaaaagc cacttgagat gtacagtcat
13164 3301 ataccagata gaaaggaact ccaaaaacct ccgtggttta agggaaagca gtaattactc
13165 3361 aaatgcagta attcactgca tgcagagcaa tgaggtgctg cagctgtaat gcattatatc
13166 3421 aattacacgg gtctgacaga atgggctctt ccacactgta caaatgaagt caggaaaact
13167 3481 gttccctgta accccatgta cccaactcca cacagcagtt tttcctcact tctgcagcac
13168 3541 acctttccag aagcatgaaa gagatacaga gaacgcttgc aatgtgtcgt ttattcagtt
13169 3601 cttcctttta agttctcaat gtttaagttt attgaatgta aacattttct ttatagaagg
13170 3661 ctctttatag cacaatttgt ttttacagta taattaaata ttttcaaaat tctgtttttc
13171 3721 tttgtaaaca agttggtttg gtaattaaag aactggttat actgaa
13172 //
13173
13174 LOCUS NM_001167759 2041 bp mRNA linear VRT 04-JAN-2017
13175 DEFINITION Gallus gallus RAD52 homolog, DNA repair protein (RAD52), transcript
13176 variant 1, mRNA.
13177 ACCESSION NM_001167759 XM_416383
13178 VERSION NM_001167759.1
13179 KEYWORDS RefSeq.
13180 SOURCE Gallus gallus (chicken)
13181 ORGANISM Gallus gallus
13182 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
13183 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
13184 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
13185 Phasianidae; Phasianinae; Gallus.
13186 REFERENCE 1 (bases 1 to 2041)
13187 AUTHORS Froman DP, Kirby JD and Rhoads DD.
13188 TITLE An expressed sequence tag analysis of the chicken reproductive
13189 tract transcriptome
13190 JOURNAL Poult. Sci. 85 (8), 1438-1441 (2006)
13191 PUBMED 16903475
13192 REFERENCE 2 (bases 1 to 2041)
13193 AUTHORS Adachi N, Iiizumi S and Koyama H.
13194 TITLE Evidence for a role of vertebrate Rad52 in the repair of
13195 topoisomerase II-mediated DNA damage
13196 JOURNAL DNA Cell Biol. 24 (6), 388-393 (2005)
13197 PUBMED 15941391
13198 REMARK GeneRIF: Chicken cells lacking Rad52 do exhibit increased
13199 sensitivity to the topoisomerase II inhibitor VP-16, demonstrating
13200 a major DNA repair defect associated with loss of Rad52 in
13201 vertebrate cells.
13202 REFERENCE 3 (bases 1 to 2041)
13203 AUTHORS Bezzubova OY, Schmidt H, Ostermann K, Heyer WD and Buerstedde JM.
13204 TITLE Identification of a chicken RAD52 homologue suggests conservation
13205 of the RAD52 recombination pathway throughout the evolution of
13206 higher eukaryotes
13207 JOURNAL Nucleic Acids Res. 21 (25), 5945-5949 (1993)
13208 PUBMED 8290357
13209 COMMENT VALIDATED REFSEQ: This record has undergone validation or
13210 preliminary review. The reference sequence was derived from
13211 DT655931.1, AADN04000024.1, BX929422.1 and U01047.1.
13212 On Nov 18, 2009 this sequence version replaced gi:118082976.
13213
13214 Transcript Variant: This variant (1) represents the longer
13215 transcript and encodes the longer isoform (1).
13216
13217 Sequence Note: This RefSeq record was created from transcript and
13218 genomic sequence data to make the sequence consistent with the
13219 reference genome assembly. The genomic coordinates used for the
13220 transcript record were based on transcript alignments.
13221
13222 ##Evidence-Data-START##
13223 CDS exon combination :: U01047.1 [ECO:0000331]
13224 RNAseq introns :: mixed/partial sample support SAMEA2201357,
13225 SAMEA2201358 [ECO:0000350]
13226 ##Evidence-Data-END##
13227 COMPLETENESS: complete on the 3' end.
13228 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
13229 1-101 DT655931.1 17-117
13230 102-102 AADN04000024.1 1801317-1801317
13231 103-423 DT655931.1 119-439
13232 424-632 BX929422.1 460-668
13233 633-727 AADN04000024.1 1806972-1807066
13234 728-1610 U01047.1 738-1620
13235 1611-2041 AADN04000024.1 1809810-1810240
13236 FEATURES Location/Qualifiers
13237 source 1..2041
13238 /organism="Gallus gallus"
13239 /mol_type="mRNA"
13240 /db_xref="taxon:9031"
13241 /chromosome="1"
13242 /map="1"
13243 /breed="Leghorn"
13244 gene 1..2041
13245 /gene="RAD52"
13246 /note="RAD52 homolog, DNA repair protein"
13247 /db_xref="CGNC:9834"
13248 /db_xref="GeneID:418152"
13249 CDS 22..1290
13250 /gene="RAD52"
13251 /note="isoform 1 is encoded by transcript variant 1; DNA
13252 repair protein RAD52 homolog"
13253 /codon_start=1
13254 /product="DNA repair protein RAD52 homolog isoform 1"
13255 /protein_id="NP_001161231.1"
13256 /db_xref="CGNC:9834"
13257 /db_xref="GeneID:418152"
13258 /translation="MPERQGKDSESHVSSSCTSTSNSVACFGQYQYTANEYQAIQHAL
13259 RQKLGPEYISSRQAGGGQKVCYIEGHKVISLANEMFGFNGWAHSVTQQNVDFVDLNNG
13260 RFYVGVCAFVKVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALKCFG
13261 NALGNCILDKDYLQAVNKLPRQMPPELDLVKTKRQDYEPEIEKARYDGCLERQNPGWR
13262 QQCETAPTCKPTHTEASGVTEDQKQPSSSGNTDSPAVECDATYQRKLRQKQLQQQFWE
13263 QMEKRRQVKEVTPSSKQATANPPVKHSTPAAVQQELAIEEEFFADDLELWDISLETTD
13264 LNKLMCHKAAGSPAAQQPPETPHRRHQMTTRNRTPQRMHYHKPPVRFAQLQPSAALTS
13265 NSHGANQRTPAEHSPYRRSQSWKKRRLEPT"
13266 ORIGIN
13267 1 cggcccggcc tgacccaggg gatgcctgaa aggcaaggga aggacagtga aagccatgtc
13268 61 agcagcagct gtaccagcac cagcaactca gttgcttgct ttggacagta tcaatataca
13269 121 gcaaatgaat atcaagccat ccagcatgct cttcgtcaga aactgggtcc agagtatatc
13270 181 agcagtcggc aagctggggg aggacaaaag gtctgttaca ttgagggtca caaggtaatc
13271 241 agtctggcca atgagatgtt tggcttcaat ggctgggctc attcagtcac tcaacagaat
13272 301 gttgactttg ttgatctcaa caacggcagg ttctatgtgg gggtctgtgc attcgtgaaa
13273 361 gtgcagctta aggacggctc ataccatgaa gatgtgggct atggagtcag tgaaggcttg
13274 421 aagtccaagg ccttgtcctt agaaaaggca agaaaggagg cagtaacaga tggactgaag
13275 481 agggcgctca agtgctttgg gaatgctctt gggaactgca tcctagacaa agactaccta
13276 541 caagcagtta ataagcttcc acgtcagatg ccccctgagt tagatctggt gaaaactaaa
13277 601 agacaggact atgagcctga aatagagaaa gcaaggtacg acggctgttt ggaaaggcag
13278 661 aacccaggat ggagacaaca gtgtgaaacg gcaccaactt gtaagcccac tcacacagag
13279 721 gcttccggag tgacagaaga tcagaagcag ccaagcagtt ctggaaatac agattcccca
13280 781 gctgttgagt gtgatgccac gtatcagcgg aaactgcgac aaaagcagct gcagcaacag
13281 841 ttctgggaac agatggaaaa gagacgtcag gttaaggaag ttactcccag cagcaaacag
13282 901 gcaacagcca atcctcctgt aaaacacagc actccggcag cagtacagca ggaactggca
13283 961 atagaagaag agttctttgc agatgatctt gaactctggg acatttcctt ggagaccacc
13284 1021 gaccttaaca agttgatgtg tcacaaagca gcaggctcac cagcagcaca gcagcccccc
13285 1081 gagacgcccc acagacgtca ccagatgaca actcgtaaca ggacgcctca gagaatgcat
13286 1141 tatcacaaac cgcctgtgag gtttgcacag ttgcagccat ctgctgctct cacaagcaac
13287 1201 agccacggtg ccaaccaacg cacaccagca gagcacagcc cttacaggag aagtcaaagc
13288 1261 tggaagaagc ggaggctaga acccacatag gacacgtggt ggcatcatta cctacatgct
13289 1321 ggattacatc ataagactgc agttggctgc tcaaagtacg tgaggaagct tcatctatta
13290 1381 atagattgtc ctaaagcaac acagaatagc cagagagaca cagccagcaa gaacttcatg
13291 1441 tgctttgggt ttattacata gtccagattt ttttttctat aaacacacaa tcatttgtgc
13292 1501 tcctgcacaa ctcgtggctg ttttacaaat aatttgcctg agaattgtag cataagtaaa
13293 1561 ccttcaaatg agatgccata gcttcttccc tgctcagtgt tgcatttagg cgtacagaaa
13294 1621 agtttttttc caataaaacg aggacagggt gggctgtggc cccaggaaag cacactgacc
13295 1681 gcagtctccc attccctcgg gccgtttgca gctgtggcag cctctgcctc acatgcagca
13296 1741 cggctgcctg cccagaggct gcacaagcag gggcagagca ttgccctgac acggctctgc
13297 1801 ctcacctcaa ccctcaagca cgcggcattc ccagcagcag cagcagcaca tccacctgtg
13298 1861 cccacgcagc acggggtcag gaacacgcgg ggactgctat tgaggggtac atacagcatc
13299 1921 taagtgctgg tttggacctt ttgtgaaatg aatgagagct gcaatcttat acttttagtg
13300 1981 ttttaaatca gcttttactc ctttttaaca caagaataaa cactaaatgt ggacagacaa
13301 2041 a
13302 //
13303
13304 LOCUS NM_001167758 2038 bp mRNA linear VRT 04-JAN-2017
13305 DEFINITION Gallus gallus RAD52 homolog, DNA repair protein (RAD52), transcript
13306 variant 2, mRNA.
13307 ACCESSION NM_001167758
13308 VERSION NM_001167758.1
13309 KEYWORDS RefSeq.
13310 SOURCE Gallus gallus (chicken)
13311 ORGANISM Gallus gallus
13312 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
13313 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
13314 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
13315 Phasianidae; Phasianinae; Gallus.
13316 REFERENCE 1 (bases 1 to 2038)
13317 AUTHORS Froman DP, Kirby JD and Rhoads DD.
13318 TITLE An expressed sequence tag analysis of the chicken reproductive
13319 tract transcriptome
13320 JOURNAL Poult. Sci. 85 (8), 1438-1441 (2006)
13321 PUBMED 16903475
13322 REFERENCE 2 (bases 1 to 2038)
13323 AUTHORS Adachi N, Iiizumi S and Koyama H.
13324 TITLE Evidence for a role of vertebrate Rad52 in the repair of
13325 topoisomerase II-mediated DNA damage
13326 JOURNAL DNA Cell Biol. 24 (6), 388-393 (2005)
13327 PUBMED 15941391
13328 REMARK GeneRIF: Chicken cells lacking Rad52 do exhibit increased
13329 sensitivity to the topoisomerase II inhibitor VP-16, demonstrating
13330 a major DNA repair defect associated with loss of Rad52 in
13331 vertebrate cells.
13332 REFERENCE 3 (bases 1 to 2038)
13333 AUTHORS Bezzubova OY, Schmidt H, Ostermann K, Heyer WD and Buerstedde JM.
13334 TITLE Identification of a chicken RAD52 homologue suggests conservation
13335 of the RAD52 recombination pathway throughout the evolution of
13336 higher eukaryotes
13337 JOURNAL Nucleic Acids Res. 21 (25), 5945-5949 (1993)
13338 PUBMED 8290357
13339 COMMENT VALIDATED REFSEQ: This record has undergone validation or
13340 preliminary review. The reference sequence was derived from
13341 DT655931.1, AADN04000024.1 and BX929422.1.
13342
13343 Transcript Variant: This variant (2) uses an alternate in-frame
13344 splice site in the 3' coding region, compared to variant 1. This
13345 results in a shorter protein (isoform 2), compared to isoform 1.
13346
13347 Sequence Note: This RefSeq record was created from transcript and
13348 genomic sequence data to make the sequence consistent with the
13349 reference genome assembly. The genomic coordinates used for the
13350 transcript record were based on transcript alignments.
13351
13352 ##Evidence-Data-START##
13353 CDS exon combination :: BX929422.1 [ECO:0000331]
13354 RNAseq introns :: mixed/partial sample support SAMEA2201357,
13355 SAMEA2201358 [ECO:0000350]
13356 ##Evidence-Data-END##
13357 COMPLETENESS: complete on the 3' end.
13358 PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
13359 1-101 DT655931.1 17-117
13360 102-102 AADN04000024.1 1801317-1801317
13361 103-423 DT655931.1 119-439
13362 424-632 BX929422.1 460-668
13363 633-633 AADN04000024.1 1806972-1806972
13364 634-1607 BX929422.1 670-1643
13365 1608-2038 AADN04000024.1 1809810-1810240
13366 FEATURES Location/Qualifiers
13367 source 1..2038
13368 /organism="Gallus gallus"
13369 /mol_type="mRNA"
13370 /db_xref="taxon:9031"
13371 /chromosome="1"
13372 /map="1"
13373 /breed="Leghorn"
13374 gene 1..2038
13375 /gene="RAD52"
13376 /note="RAD52 homolog, DNA repair protein"
13377 /db_xref="CGNC:9834"
13378 /db_xref="GeneID:418152"
13379 CDS 22..1287
13380 /gene="RAD52"
13381 /note="isoform 2 is encoded by transcript variant 2; DNA
13382 repair protein RAD52 homolog"
13383 /codon_start=1
13384 /product="DNA repair protein RAD52 homolog isoform 2"
13385 /protein_id="NP_001161230.1"
13386 /db_xref="CGNC:9834"
13387 /db_xref="GeneID:418152"
13388 /translation="MPERQGKDSESHVSSSCTSTSNSVACFGQYQYTANEYQAIQHAL
13389 RQKLGPEYISSRQAGGGQKVCYIEGHKVISLANEMFGFNGWAHSVTQQNVDFVDLNNG
13390 RFYVGVCAFVKVQLKDGSYHEDVGYGVSEGLKSKALSLEKARKEAVTDGLKRALKCFG
13391 NALGNCILDKDYLQAVNKLPRQMPPELDLVKTKRQDYEPEIEKARYDGCLERQNPGWR
13392 QQCETAPTCKPTHTEASGVTEDQKQPSSSGNTDSPAVECDATYQRKLRQKQLQQQFWE
13393 QMEKRRQVKEVTPSSKQATANPPVKHSTPAAVQQELAIEEEFFADDLELWDISLETTD
13394 LNKLMCHKAAGSPAAQQPPETPHRRHQMTTRNRTPQRMHYHKPPVRFAQLQPSAALTS
13395 NSHGANQRTPEHSPYRRSQSWKKRRLEPT"
13396 ORIGIN
13397 1 cggcccggcc tgacccaggg gatgcctgaa aggcaaggga aggacagtga aagccatgtc
13398 61 agcagcagct gtaccagcac cagcaactca gttgcttgct ttggacagta tcaatataca
13399 121 gcaaatgaat atcaagccat ccagcatgct cttcgtcaga aactgggtcc agagtatatc
13400 181 agcagtcggc aagctggggg aggacaaaag gtctgttaca ttgagggtca caaggtaatc
13401 241 agtctggcca atgagatgtt tggcttcaat ggctgggctc attcagtcac tcaacagaat
13402 301 gttgactttg ttgatctcaa caacggcagg ttctatgtgg gggtctgtgc attcgtgaaa
13403 361 gtgcagctta aggacggctc ataccatgaa gatgtgggct atggagtcag tgaaggcttg
13404 421 aagtccaagg ccttgtcctt agaaaaggca agaaaggagg cagtaacaga tggactgaag
13405 481 agggcgctca agtgctttgg gaatgctctt gggaactgca tcctagacaa agactaccta
13406 541 caagcagtta ataagcttcc acgtcagatg ccccctgagt tagatctggt gaaaactaaa
13407 601 agacaggact atgagcctga aatagagaaa gcaaggtacg acggctgttt ggaaaggcag
13408 661 aacccaggat ggagacaaca gtgtgaaacg gcaccaactt gtaagcccac tcacacagag
13409 721 gcttccggag tgacagaaga tcagaagcag ccaagcagtt ctggaaatac agattcccca
13410 781 gctgttgagt gtgatgccac gtatcagcgg aaactgcgac aaaagcagct gcagcaacag
13411 841 ttctgggaac agatggaaaa gagacgtcag gttaaggaag ttactcccag cagcaaacag
13412 901 gcaacagcca atcctcctgt aaaacacagc actccggcag cagtacagca ggaactggca
13413 961 atagaagaag agttctttgc agatgatctt gaactctggg acatttcctt ggagaccacc
13414 1021 gaccttaaca agttgatgtg tcacaaagca gcaggctcac cagcagcaca gcagcccccc
13415 1081 gagacgcccc acagacgtca ccagatgaca actcgtaaca ggacgcctca gagaatgcat
13416 1141 tatcacaaac cgcctgtgag gtttgcacag ttgcagccat ctgctgctct cacaagcaac
13417 1201 agccacggtg ccaaccaacg cacaccagag cacagccctt acaggagaag tcaaagctgg
13418 1261 aagaagcgga ggctagaacc cacataggac acgtggtggc atcattacct acatgctgga
13419 1321 ttacatcata agactgcagt tggctgctca aagtacgtga ggaagcttca tctattaata
13420 1381 gattgtccta aagcaacaca gaatagccag agagacacag ccagcaagaa cttcatgtgc
13421 1441 tttgggttta ttacatagtc cagatttttt tttctataaa cacacaatca tttgtgctcc
13422 1501 tgcacaactc gtggctgttt tacaaataat ttgcctgaga attgtagcat aagtaaacct
13423 1561 tcaaatgaga tgccatagct tcttccctgc tcagtgttgc atttaggcgt acagaaaagt
13424 1621 ttttttccaa taaaacgagg acagggtggg ctgtggcccc aggaaagcac actgaccgca
13425 1681 gtctcccatt ccctcgggcc gtttgcagct gtggcagcct ctgcctcaca tgcagcacgg
13426 1741 ctgcctgccc agaggctgca caagcagggg cagagcattg ccctgacacg gctctgcctc
13427 1801 acctcaaccc tcaagcacgc ggcattccca gcagcagcag cagcacatcc acctgtgccc
13428 1861 acgcagcacg gggtcaggaa cacgcgggga ctgctattga ggggtacata cagcatctaa
13429 1921 gtgctggttt ggaccttttg tgaaatgaat gagagctgca atcttatact tttagtgttt
13430 1981 taaatcagct tttactcctt tttaacacaa gaataaacac taaatgtgga cagacaaa
13431 //
13432
13433 LOCUS NM_001163651 1280 bp mRNA linear VRT 04-JAN-2017
13434 DEFINITION Gallus gallus progestin and adipoQ receptor family member 7
13435 (PAQR7), mRNA.
13436 ACCESSION NM_001163651 XM_423259
13437 VERSION NM_001163651.1
13438 KEYWORDS RefSeq.
13439 SOURCE Gallus gallus (chicken)
13440 ORGANISM Gallus gallus
13441 Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
13442 Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
13443 Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
13444 Phasianidae; Phasianinae; Gallus.
13445 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
13446 NCBI review. The reference sequence was derived from GQ203624.1.
13447 On Jul 28, 2009 this sequence version replaced gi:118101610.
13448
13449 ##Evidence-Data-START##
13450 Transcript exon combination :: GQ203624.1, BU239975.1 [ECO:0000332]
13451 RNAseq introns :: single sample supports all introns
13452 SAMEA2201368, SAMEA2201371
13453 [ECO:0000348]
13454 ##Evidence-Data-END##
13455 FEATURES Location/Qualifiers
13456 source 1..1280
13457 /organism="Gallus gallus"
13458 /mol_type="mRNA"
13459 /db_xref="taxon:9031"
13460 /chromosome="23"
13461 /map="23"
13462 gene 1..1280
13463 /gene="PAQR7"
13464 /note="progestin and adipoQ receptor family member 7"
13465 /db_xref="CGNC:7361"
13466 /db_xref="GeneID:425505"
13467 misc_feature 138..140
13468 /gene="PAQR7"
13469 /note="upstream in-frame stop codon"
13470 CDS 189..1229
13471 /gene="PAQR7"
13472 /note="progestin and adipoQ receptor family member VII,
13473 membrane progestin receptor alpha variant 2; progestin and
13474 adipoQ receptor family member VII, membrane progestin
13475 receptor alpha variant 3"
13476 /codon_start=1
13477 /product="membrane progestin receptor alpha"
13478 /protein_id="NP_001157123.1"
13479 /db_xref="CGNC:7361"
13480 /db_xref="GeneID:425505"
13481 /translation="MAAVVAEKLSRLFISVRQVPQLLAPPVPTTVSSSEVPRVFWKPY
13482 IHTGYRPVHQTWRYYFSTLFQQHNEAINVWTHLVATLILLLRFQQLSQRVDFGQDPHA
13483 QPLLIIITASITYLTFSTLAHLLQAKSEFWHYSFFFMDYVGVAIYQYGSALVHYYYAI
13484 EPSWHEKIQGFFMPTAALLAWLSCAGSCYAKFRYHQSAGLLGRLCQEMPSGLAYLLDI
13485 SPVVHRICTASPAERTDPALLYHKCQVLFFLIGAFFFSHPYPEKLLPGKCYFFGQSHQ
13486 IFHVFLVLCTLAQIEAVVLDYESRRHIYSSLQGDLAHHFSALCVFTVTCSVLTAAYMA
13487 RKVRDKLSFKED"
13488 ORIGIN
13489 1 gagactccgt cggaatcggt gctccgggga gagctccgca gcttttcctg gctgagctat
13490 61 acttgaagcg actgaacttg gcaggagctg gggcttaaag cagcaccgga gctgggctgg
13491 121 tttcttccca acttgtctga gcaagagcag gtgctttgga gcaacgagag ctgcggtgcg
13492 181 gctgtgccat ggcagcggtg gtggcagaga agctcagccg cctcttcatc agcgtgcgcc
13493 241 aggtccccca gctgctggcc cccccggtgc ccaccaccgt cagcagctcc gaggtgccga
13494 301 gggttttctg gaagccttac atccacaccg gctaccgccc ggtgcaccaa acctggcgct
13495 361 attacttctc gacgctcttc cagcaacaca acgaagccat caacgtgtgg acccacctgg
13496 421 tggccacgct gatcctgctg ctgcgcttcc agcagctctc ccagagggtg gattttgggc
13497 481 aggacccgca cgcccagccg ctcctcatca tcatcacggc atccatcacc tacctgacgt
13498 541 tcagcacgct cgctcacctc ctgcaggcta agtccgagtt ctggcactac agcttcttct
13499 601 tcatggacta cgtgggggtg gccatctacc agtatggcag tgctctggtg cactactact
13500 661 atgccatcga gcccagctgg cacgagaaga tccagggctt cttcatgccc acagctgcgc
13501 721 tgctggcctg gctgtcgtgt gcaggctcat gctacgccaa gttccgctac catcagtcag
13502 781 cagggctgct gggccggctg tgccaggaga tgccctcagg cctggcctac ctgctggata
13503 841 tcagccctgt tgtgcaccgc atctgcaccg catcacctgc ggagcgcaca gatccggccc
13504 901 tgctgtacca caagtgccag gtgctgttct tcctcatcgg tgcctttttt ttctcccatc
13505 961 cttacccaga gaagttgctt cccgggaaat gctacttctt tgggcaaagc catcagatct
13506 1021 tccatgtctt cctggtgctt tgcactctgg cacagatcga ggccgtggtg ctggactatg
13507 1081 agtccaggcg gcacatctac tcctcgctgc agggtgacct ggcgcaccac ttctctgccc
13508 1141 tgtgtgtctt cactgtgacc tgctccgtgc tcacggctgc atacatggca cggaaggtga
13509 1201 gggacaaact gagcttcaaa gaagattgag atttggggca gagtggggga taccatggcc
13510 1261 aaagctgcat gctccaagga
13511 //
13512