Mercurial > repos > yating-l > gbtofasta

comparison filter.py @ 1:b673449d111a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit f3fb68f4faf6766eef195b8b36157035ab95e7b1-dirty
author yating-l
date Mon, 05 Jun 2017 12:50:14 -0400
parents
children
comparison
equal deleted inserted replaced
0:9573618e2afe 1:b673449d111a
1 import sys
2 import argparse
3
4 def filter(cds_file, valid_cds_file):
5 valid = open(valid_cds_file, 'w')
6 with open(cds_file, 'r') as f:
7 for line in f:
8 if len(line.rstrip().split('\t')) == 2:
9 valid.write(line)
10 valid.close()
11
12 def main(argv):
13 parser = argparse.ArgumentParser(description='Filter out records without CDS coordinates')
14 parser.add_argument('-f', help='cds file')
15 parser.add_argument('-o', help='validated cds file')
16 args = parser.parse_args()
17 filter(args.f, args.o)
18
19 if __name__ == '__main__':
20 main(sys.argv)