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annotate ucsc_macros.xml @ 0:c440273bd845 draft default tip

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planemo upload commit 7624082bc86d63e7a63cc72a75287b7b7408678d-dirty
author yating-l
date Mon, 10 Jul 2017 12:43:51 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <macros>
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2 <xml name="requirements_twobit">
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3 <requirements>
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4 <requirement type="package" version="340">ucsc_twobit</requirement>
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5 <yield />
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6 </requirements>
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7 </xml>
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8 <xml name="environment_LC_COLLATE">
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9 <environment_variables>
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10 <!-- Sort uppercase letters before lowercase (required by UCSC tools) -->
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11 <environment_variable name="LC_COLLATE">C</environment_variable>
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12 <yield />
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13 </environment_variables>
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14 </xml>
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15 <xml name="citations">
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16 <citations>
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17 <citation type="bibtex">
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18 @article{Kent01062002,
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19 author = {Kent, W. James and Sugnet, Charles W. and Furey, Terrence S. and Roskin, Krishna M. and Pringle, Tom H. and Zahler, Alan M. and Haussler, and David},
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20 title = {The Human Genome Browser at UCSC},
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21 volume = {12},
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22 number = {6},
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23 pages = {996-1006},
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24 year = {2002},
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25 doi = {10.1101/gr.229102},
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26 URL = {http://genome.cshlp.org/content/12/6/996.abstract},
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27 eprint = {http://genome.cshlp.org/content/12/6/996.full.pdf+html},
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28 journal = {Genome Research}
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29 }
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30 </citation>
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31 <yield />
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32 </citations>
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33 </xml>
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34
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35 <token name="@OPTIONAL_PARAM_FUNC@">
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36 <![CDATA[
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37 #def optional_param($_flag, $_flag_value, $_sep="=")
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38 #if str($_flag_value) and str($_flag_value).strip():
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39 ${_flag}${_sep}${_flag_value}
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40 #end if
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41 #end def
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42 ]]>
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43 </token>
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44 </macros>