# HG changeset patch # User yating-l # Date 1499705031 14400 # Node ID c440273bd845b0e4e83d61cd0300bd7a8a9bf87d planemo upload commit 7624082bc86d63e7a63cc72a75287b7b7408678d-dirty diff -r 000000000000 -r c440273bd845 README.md --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.md Mon Jul 10 12:43:51 2017 -0400 @@ -0,0 +1,9 @@ +hgGcPercent +------------ + +This is a Galaxy Wrapper to calculate GC percentages of a twobit file. + +Reference +========= + +[Browser Track Construction on GC Percent](http://genomewiki.ucsc.edu/index.php/Browser_Track_Construction#GC_Percent) diff -r 000000000000 -r c440273bd845 hg_gc_percent.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hg_gc_percent.xml Mon Jul 10 12:43:51 2017 -0400 @@ -0,0 +1,96 @@ + + + Calculates GC percentages of a twoBit file + + + ucsc_macros.xml + + + + ucsc_gcpercent + ucsc_bigwig + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r c440273bd845 test-data/contig12_gc5Base.bw Binary file test-data/contig12_gc5Base.bw has changed diff -r 000000000000 -r c440273bd845 test-data/contigs.unmasked.2bit Binary file test-data/contigs.unmasked.2bit has changed diff -r 000000000000 -r c440273bd845 test-data/contigs_gc100Base_10overlap.bw Binary file test-data/contigs_gc100Base_10overlap.bw has changed diff -r 000000000000 -r c440273bd845 test-data/contigs_gc5Base.bw Binary file test-data/contigs_gc5Base.bw has changed diff -r 000000000000 -r c440273bd845 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jul 10 12:43:51 2017 -0400 @@ -0,0 +1,12 @@ + + + + + + + + + + + + diff -r 000000000000 -r c440273bd845 ucsc_macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ucsc_macros.xml Mon Jul 10 12:43:51 2017 -0400 @@ -0,0 +1,44 @@ + + + + ucsc_twobit + + + + + + + C + + + + + + + @article{Kent01062002, +author = {Kent, W. James and Sugnet, Charles W. and Furey, Terrence S. and Roskin, Krishna M. and Pringle, Tom H. and Zahler, Alan M. and Haussler, and David}, +title = {The Human Genome Browser at UCSC}, +volume = {12}, +number = {6}, +pages = {996-1006}, +year = {2002}, +doi = {10.1101/gr.229102}, +URL = {http://genome.cshlp.org/content/12/6/996.abstract}, +eprint = {http://genome.cshlp.org/content/12/6/996.full.pdf+html}, +journal = {Genome Research} +} + + + + + + + + +