Mercurial > repos > yating-l > hubarchivecreator
comparison spliceJunctions.as @ 0:f493979f1408 draft default tip
planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
| author | yating-l |
|---|---|
| date | Wed, 21 Dec 2016 12:13:04 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:f493979f1408 |
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| 1 table spliceJunctions | |
| 2 "Predicted splice junctions" | |
| 3 ( | |
| 4 string chrom; "Reference sequence chromosome or scaffold" | |
| 5 uint chromStart; "Start position in chromosome" | |
| 6 uint chromEnd; "End position in chromosome" | |
| 7 string name; "Name of item" | |
| 8 uint score; "Score from 0-1000" | |
| 9 char[1] strand; "+ or -" | |
| 10 uint thickStart; "Start of where display should be thick (start codon)" | |
| 11 uint thickEnd; "End of where display should be thick (stop codon)" | |
| 12 uint reserved; "Used as itemRgb as of 2004-11-22" | |
| 13 int blockCount; "Number of blocks" | |
| 14 int[blockCount] blockSizes; "Comma separated list of block sizes" | |
| 15 int[blockCount] chromStarts; "Start positions relative to chromStart" | |
| 16 uint junctionScore; "Number of reads supporting the splice junction" | |
| 17 ) |