Mercurial > repos > yating-l > hubarchivecreator

diff test-data/gtf_gff/__main__.log @ 0:f493979f1408 draft default tip

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planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
author yating-l
date Wed, 21 Dec 2016 12:13:04 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gtf_gff/__main__.log	Wed Dec 21 12:13:04 2016 -0500
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+DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode ####
+
+DEBUG:root:Calling faToTwoBit:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling twoBitInfo:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1184.dat
+DEBUG:root:data_value: {u'order_index': u'10', u'name': u'Augustus_Gene_Predictions', u'track_color': u'#000000', u'group_name': u'Default group'}
+DEBUG:root:Calling gff3ToGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling genePredToBigGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp7sqcWp.sorted.bigGenePred
+DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpp6ZdZ_.chrom.sizes
+DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/tracks/Augustus_Gene_Predictions.bb
+DEBUG:root:typeOption: bed12+8
+DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as
+DEBUG:root:tab option: True
+DEBUG:root:Calling bedToBigBed:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat
+DEBUG:root:data_value: {u'order_index': u'11', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Default group'}
+DEBUG:root:Calling gtfToGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling genePredToBigGenePred:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:Calling sort:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp66b4It.sortedBed.bigGenePred
+DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpp6ZdZ_.chrom.sizes
+DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb
+DEBUG:root:typeOption: bed12+8
+DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as
+DEBUG:root:tab option: True
+DEBUG:root:Calling bedToBigBed:
+DEBUG:root:---------
+DEBUG:root:	
+DEBUG:root:----- End of all_datatype_dictionary processing -----
+DEBUG:root:all_datatype_ordered_dictionary keys are: [<Gtf.Gtf object at 0x1ecae10>, <Gff3.Gff3 object at 0x1ecad10>]
+DEBUG:root:----- Beginning of Track adding processing -----
+DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/groups.txt the group Default group
+DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group default_group)
+DEBUG:root:We DON'T add in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/911/dataset_1279_files/myHub/Dbia3/groups.txt the group Default group
+DEBUG:root:We just added track Augustus_Gene_Predictions.bb (in group default_group)
+DEBUG:root:----- End of Track adding processing -----
+DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####