Mercurial > repos > yating-l > hubarchivecreator
view test-data/gtf/__main__.log @ 0:f493979f1408 draft default tip
planemo upload for repository https://github.com/Yating-L/hubarchivecreator-test commit 48b59e91e2dcc2e97735ee35d587960cbfbce932-dirty
author | yating-l |
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date | Wed, 21 Dec 2016 12:13:04 -0500 |
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DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### DEBUG:root:Calling faToTwoBit: DEBUG:root:--------- DEBUG:root: DEBUG:root:Calling twoBitInfo: DEBUG:root:--------- DEBUG:root: DEBUG:root:Calling sort: DEBUG:root:--------- DEBUG:root: DEBUG:root:input_false_path: /home/svc_galaxy/new/galaxy/database/files/001/dataset_1197.dat DEBUG:root:data_value: {u'order_index': u'10', u'name': u'StringTie_Assembled_Transcripts', u'track_color': u'#000000', u'group_name': u'Default group'} DEBUG:root:Calling gtfToGenePred: DEBUG:root:--------- DEBUG:root: DEBUG:root:Calling genePredToBigGenePred: DEBUG:root:--------- DEBUG:root: DEBUG:root:Calling sort: DEBUG:root:--------- DEBUG:root: DEBUG:root:sorted_bed_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmp4nx0OH.sortedBed.bigGenePred DEBUG:root:chrom_sizes_file_name: /home/svc_galaxy/new/galaxy/database/tmp/tmpaKvcsw.chrom.sizes DEBUG:root:big_bed_file_name: /home/svc_galaxy/new/galaxy/database/jobs_directory/000/910/dataset_1278_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb DEBUG:root:typeOption: bed12+8 DEBUG:root:autoSql: /home/svc_galaxy/new/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/d786bca6a75d/hubarchivecreator/bigGenePred.as DEBUG:root:tab option: True DEBUG:root:Calling bedToBigBed: DEBUG:root:--------- DEBUG:root: DEBUG:root:----- End of all_datatype_dictionary processing ----- DEBUG:root:all_datatype_ordered_dictionary keys are: [<Gtf.Gtf object at 0x2b0dd10>] DEBUG:root:----- Beginning of Track adding processing ----- DEBUG:root:We just added in /home/svc_galaxy/new/galaxy/database/jobs_directory/000/910/dataset_1278_files/myHub/Dbia3/groups.txt the group Default group DEBUG:root:We just added track StringTie_Assembled_Transcripts.bb (in group default_group) DEBUG:root:----- End of Track adding processing ----- DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####