Mercurial > repos > yating-l > jbrowsearchivecreator

comparison trf_simpleRepeat.as @ 6:237707a6b74d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880-dirty
author yating-l
date Thu, 15 Feb 2018 17:05:05 -0500
parents
children
comparison
equal deleted inserted replaced
5:e762f4b9e4bd 6:237707a6b74d
1 table simpleRepeat
2 "Describes the Simple Tandem Repeats"
3 (
4 string chrom; "Reference sequence chromosome or scaffold"
5 uint chromStart; "Start position in chromosome"
6 uint chromEnd; "End position in chromosome"
7 string name; "Simple Repeats tag name"
8 uint period; "Length of repeat unit"
9 float copyNum; "Mean number of copies of repeat"
10 uint consensusSize; "Length of consensus sequence"
11 uint perMatch; "Percentage Match"
12 uint perIndel; "Percentage Indel"
13 uint score; "Alignment Score = 2*match-7*mismatch-7*indel; minscore=50"
14 uint A; "Percent of A's in repeat unit"
15 uint C; "Percent of C's in repeat unit"
16 uint G; "Percent of G's in repeat unit"
17 uint T; "Percent of T's in repeat unit"
18 float entropy; "Entropy"
19 lstring sequence; "Sequence of repeat unit element"
20 )