Mercurial > repos > yating-l > jbrowsearchivecreator

comparison util/Logger.py @ 6:237707a6b74d draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880-dirty
author yating-l
date Thu, 15 Feb 2018 17:05:05 -0500
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5:e762f4b9e4bd 6:237707a6b74d
1 import os
2 import sys
3 import json
4 import logging
5 import logging.config
6
7 #from util.Filters import TraceBackFormatter
8
9 class Logger(object):
10 def __init__(self, tool_directory, debug="False", extra_files_path=None):
11 self.tool_directory = tool_directory
12 self.default_level = logging.INFO
13 self.debug = debug
14 self.extra_files_path = extra_files_path
15
16 def setup_logging(self):
17 """Setup logging configuration
18 reference: https://fangpenlin.com/posts/2012/08/26/good-logging-practice-in-python/
19 """
20 config_path = os.path.join(self.tool_directory, 'logging.json')
21 default_level=logging.INFO
22 if self.debug.lower() == "true":
23 default_level=logging.DEBUG
24 if os.path.exists(config_path):
25 with open(config_path, 'rt') as f:
26 config = json.load(f)
27 config["handlers"]["console"]["level"] = default_level
28 if self.extra_files_path:
29 for i in config["handlers"]:
30 if "filename" in config["handlers"][i]:
31 config["handlers"][i]["filename"] = os.path.join(self.extra_files_path, config["handlers"][i]["filename"])
32 logging.config.dictConfig(config)
33 else:
34 logging.warn("Extra files path is not set. The log files will exist at current working directory instead of final output folder")
35 else:
36 logging.basicConfig(level=default_level)
37 logging.warn("Cannot find logging configuration file!\n")
38