Mercurial > repos > yating-l > jbrowsearchivecreator

comparison macros.xml @ 7:5d5fdcb798da draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 12fb52d5b285935b2353d93a5aa291838df7893e
author yating-l
date Fri, 20 Apr 2018 13:51:23 -0400
parents 237707a6b74d
children
comparison
equal deleted inserted replaced
6:237707a6b74d 7:5d5fdcb798da
1 <macros> 1 <macros>
2 <xml name="verify_hub_structure" token_genome="Dbia3" token_test="common"> 2 <xml name="verify_hub_structure" token_genome="Dbia3" token_test="common">
3 <extra_files type="directory" value="myHub/@GENOME@/names" compare="re_match"/> 3 <expand macro="verify_hub_structure_no_track" test="only_genome" />
4 <extra_files type="directory" value="myHub/@GENOME@/seq" compare="re_match"/> 4 <extra_files type="directory" value="@TEST@/myHub/tracks" compare="re_match"/>
5 <extra_files type="directory" value="myHub/@GENOME@/tracks" compare="re_match"/>
6 <extra_files type="file" name="myHub/@GENOME@/css/custom_track_styles.css" value="@TEST@/myHub/@GENOME@/css/custom_track_styles.css" />
7 <extra_files type="file" name="myHub/@GENOME@/tracks.conf" value="@TEST@/myHub/@GENOME@/tracks.conf" />
8 <extra_files type="file" name="myHub/@GENOME@/trackList.json">
9 <assert_contents>
10 <has_text text="tracks"/>
11 <has_text text="css"/>
12 <has_text text="names"/>
13 <has_text text="formatVersion"/>
14 </assert_contents>
15 </extra_files>
16 </xml> 5 </xml>
17 6
18 <xml name="verify_hub_structure_no_track" token_genome="Dbia3" token_test="common"> 7 <xml name="verify_hub_structure_no_track" token_genome="Dbia3" token_test="common">
19 <extra_files type="file" name="myHub/@GENOME@/trackList.json" > 8 <!-- trackList.json -->
20 <assert_contents> 9 <extra_files type="file" name="myHub/trackList.json" value="@TEST/myHub/trackList.json" />
21 <has_text text="tracks"/> 10 <!-- seq/refSeqs.json -->
22 <has_text text="css"/> 11 <extra_files type="file" name="myHub/seq/refSeqs.json" value="@TEST/myHub/seq/refSeqs.json" />
23 <has_text text="names"/> 12 <!-- name/meta.json -->
24 <has_text text="formatVersion"/> 13 <extra_files type="file" name="myHub/names/meta.json" value="@TEST/myHub/names/meta.json" />
25 </assert_contents> 14 <extra_files type="directory" value="@TEST@/myHub/names" compare="re_match"/>
26 </extra_files> 15 <extra_files type="directory" value="@TEST@/myHub/seq" compare="re_match"/>
27 <extra_files type="file" name="myHub/@GENOME@/css/custom_track_styles.css" value="@TEST@/myHub/@GENOME@/css/custom_track_styles.css" />
28 </xml> 16 </xml>
29 17
30
31
32 </macros> 18 </macros>