Mercurial > repos > yating-l > jbrowsearchivecreator

comparison tool_dependencies.xml @ 7:5d5fdcb798da draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 12fb52d5b285935b2353d93a5aa291838df7893e
author yating-l
date Fri, 20 Apr 2018 13:51:23 -0400
parents 237707a6b74d
children 7cb67cbbd8e5
comparison
equal deleted inserted replaced
6:237707a6b74d 7:5d5fdcb798da
50 </action> 50 </action>
51 </actions> 51 </actions>
52 </install> 52 </install>
53 </package> 53 </package>
54 54
55 <package name="jbrowse_tools" version="1.12.4"> 55 <package name="jbrowse_tools" version="1.13.1">
56 <install version="1.0"> 56 <install version="1.0">
57 <actions_group> 57 <actions_group>
58 <actions architecture="x86_64" os="linux"> 58 <actions architecture="x86_64" os="linux">
59 <action type="download_by_url">https://github.com/GMOD/jbrowse/releases/download/1.12.4-release/JBrowse-1.12.4.zip</action> 59 <action type="download_by_url">https://github.com/GMOD/jbrowse/releases/download/1.13.1-release/JBrowse-1.13.1.zip</action>
60 <action type="make_directory">$INSTALL_DIR/jbrowse</action> 60 <action type="make_directory">$INSTALL_DIR/jbrowse</action>
61 <action type="shell_command"> 61 <action type="shell_command">
62 export HOME=$INSTALL_DIR/jbrowse &amp;&amp; ./setup.sh 62 export HOME=$INSTALL_DIR/jbrowse &amp;&amp; ./setup.sh
63 </action> 63 </action>
64 <action type="move_directory_files"> 64 <action type="move_directory_files">
75 </actions_group> 75 </actions_group>
76 </install> 76 </install>
77 <readme>The perl scripts for converting flat files to json.</readme> 77 <readme>The perl scripts for converting flat files to json.</readme>
78 </package> 78 </package>
79 79
80 <package name="gff3sort" version="1.0">
81 <install version="1.0">
82 <actions_group>
83 <actions architecture="x86_64" os="linux">
84 <action type="download_by_url">https://github.com/billzt/gff3sort/archive/v0.1-alpha.zip</action>
85 <action type="make_directory">$INSTALL_DIR/gff3sort</action>
86 <action type="move_directory_files">
87 <source_directory>.</source_directory>
88 <destination_directory>$INSTALL_DIR/gff3sort</destination_directory>
89 </action>
90 <action type="set_environment">
91 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/gff3sort</environment_variable>
92 </action>
93 </actions>
94 </actions_group>
95 </install>
96 <readme>A Perl Script to sort gff3 files and produce suitable results for tabix tools. </readme>
97 </package>
98
80 </tool_dependency> 99 </tool_dependency>