Mercurial > repos > yating-l > jbrowsearchivecreator
diff bigGenePred.as @ 6:237707a6b74d draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880-dirty
author | yating-l |
---|---|
date | Thu, 15 Feb 2018 17:05:05 -0500 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bigGenePred.as Thu Feb 15 17:05:05 2018 -0500 @@ -0,0 +1,25 @@ +table bigGenePred +"bigGenePred gene models" + ( + string chrom; "Reference sequence chromosome or scaffold" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Name or ID of item, ideally both human readable and unique" + uint score; "Score (0-1000)" + char[1] strand; "+ or - for strand" + uint thickStart; "Start of where display should be thick (start codon)" + uint thickEnd; "End of where display should be thick (stop codon)" + uint reserved; "RGB value (use R,G,B string in input file)" + int blockCount; "Number of blocks" + int[blockCount] blockSizes; "Comma separated list of block sizes" + int[blockCount] chromStarts; "Start positions relative to chromStart" + string name2; "Alternative/human readable name" + string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" + string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" + int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" + string type; "Transcript type" + string geneName; "Primary identifier for gene" + string geneName2; "Alternative/human readable gene name" + string geneType; "Gene type" + ) +