Mercurial > repos > yating-l > jbrowsearchivecreator
diff trf_simpleRepeat.as @ 6:237707a6b74d draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880-dirty
author | yating-l |
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date | Thu, 15 Feb 2018 17:05:05 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/trf_simpleRepeat.as Thu Feb 15 17:05:05 2018 -0500 @@ -0,0 +1,20 @@ +table simpleRepeat +"Describes the Simple Tandem Repeats" + ( + string chrom; "Reference sequence chromosome or scaffold" + uint chromStart; "Start position in chromosome" + uint chromEnd; "End position in chromosome" + string name; "Simple Repeats tag name" + uint period; "Length of repeat unit" + float copyNum; "Mean number of copies of repeat" + uint consensusSize; "Length of consensus sequence" + uint perMatch; "Percentage Match" + uint perIndel; "Percentage Indel" + uint score; "Alignment Score = 2*match-7*mismatch-7*indel; minscore=50" + uint A; "Percent of A's in repeat unit" + uint C; "Percent of C's in repeat unit" + uint G; "Percent of G's in repeat unit" + uint T; "Percent of T's in repeat unit" + float entropy; "Entropy" + lstring sequence; "Sequence of repeat unit element" + )