Mercurial > repos > yating-l > jbrowsearchivecreator
diff util/Logger.py @ 6:237707a6b74d draft
planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit a500f7ab2119cc5faaf80393bd87428389d06880-dirty
author | yating-l |
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date | Thu, 15 Feb 2018 17:05:05 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/util/Logger.py Thu Feb 15 17:05:05 2018 -0500 @@ -0,0 +1,38 @@ +import os +import sys +import json +import logging +import logging.config + +#from util.Filters import TraceBackFormatter + +class Logger(object): + def __init__(self, tool_directory, debug="False", extra_files_path=None): + self.tool_directory = tool_directory + self.default_level = logging.INFO + self.debug = debug + self.extra_files_path = extra_files_path + + def setup_logging(self): + """Setup logging configuration + reference: https://fangpenlin.com/posts/2012/08/26/good-logging-practice-in-python/ + """ + config_path = os.path.join(self.tool_directory, 'logging.json') + default_level=logging.INFO + if self.debug.lower() == "true": + default_level=logging.DEBUG + if os.path.exists(config_path): + with open(config_path, 'rt') as f: + config = json.load(f) + config["handlers"]["console"]["level"] = default_level + if self.extra_files_path: + for i in config["handlers"]: + if "filename" in config["handlers"][i]: + config["handlers"][i]["filename"] = os.path.join(self.extra_files_path, config["handlers"][i]["filename"]) + logging.config.dictConfig(config) + else: + logging.warn("Extra files path is not set. The log files will exist at current working directory instead of final output folder") + else: + logging.basicConfig(level=default_level) + logging.warn("Cannot find logging configuration file!\n") +