Mercurial > repos > yating-l > jbrowsearchivecreator

diff tool_dependencies.xml @ 2:25ad6770359e draft

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planemo upload for repository https://github.com/Yating-L/jbrowse-archive-creator.git commit 479fc6490e24ca0e5034ae6c3579882e97e095e6
author yating-l
date Mon, 22 May 2017 15:48:56 -0400
parents 804a93e87cc8
children 237707a6b74d
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line diff
--- a/tool_dependencies.xml	Thu Apr 13 10:36:12 2017 -0400
+++ b/tool_dependencies.xml	Mon May 22 15:48:56 2017 -0400
@@ -71,8 +71,11 @@
                 <actions architecture="x86_64" os="linux">
                     <action type="download_by_url">http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=105</action>
                     <action type="make_directory">$INSTALL_DIR/jbrowse</action>
+                    <action type="set_environment">
+                        <environment_variable action="set_to" name="HOME">$INSTALL_DIR/jbrowse</environment_variable>
+                    </action>
                     <action type="shell_command">
-                        ./setup.sh
+                        export HOME=$INSTALL_DIR/jbrowse &amp;&amp; ./setup.sh
                     </action>
                     <action type="move_directory_files">
                         <source_directory>.</source_directory>