Mercurial > repos > yating-l > jbrowsearchivecreator
diff util/Reader.py @ 13:43a700afd457 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit bcb239c4045d2c47a8acad5fbd29eea03663e187
| author | yating-l |
|---|---|
| date | Tue, 19 Jun 2018 17:59:51 -0400 |
| parents | 5d5fdcb798da |
| children |
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--- a/util/Reader.py Sat Jun 02 13:08:46 2018 -0400 +++ b/util/Reader.py Tue Jun 19 17:59:51 2018 -0400 @@ -120,11 +120,15 @@ # TODO: Optimize this double loop for input_data in array_inputs: input_false_path = input_data["false_path"] - input_data["name"] = santitizer.sanitize_name_input(input_data["name"]) - extensionObject = ExtensionClass(input_false_path, input_data) - extensionObject.generateCustomTrack() - datatype_dictionary.update({input_data["order_index"]: extensionObject}) - self.logger.debug("%s object: %s has been created", ExtensionClass, input_data["name"]) + # if the file is empty, skip the rest + if os.path.isfile(input_false_path) and os.path.getsize(input_false_path) > 0: + input_data["name"] = santitizer.sanitize_name_input(input_data["name"]) + extensionObject = ExtensionClass(input_false_path, input_data) + extensionObject.generateCustomTrack() + datatype_dictionary.update({input_data["order_index"]: extensionObject}) + self.logger.debug("%s object: %s has been created", ExtensionClass, input_data["name"]) + else: + self.logger.info("The input file: %s is empty, skip creating the track for this data", input_data["name"]) return datatype_dictionary