Mercurial > repos > yating-l > jbrowsearchivecreator
diff jbrowseArchiveCreator.xml @ 19:62dee5369e80 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit afd782e8741a859506794bea92475f620265c50e
| author | sargentl |
|---|---|
| date | Thu, 13 Sep 2018 17:43:23 -0400 |
| parents | 79b23a8afb15 |
| children | 85971ec2a527 |
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--- a/jbrowseArchiveCreator.xml Fri Jul 20 12:25:36 2018 -0400 +++ b/jbrowseArchiveCreator.xml Thu Sep 13 17:43:23 2018 -0400 @@ -20,11 +20,11 @@ <command detect_errors="exit_code"><![CDATA[ mkdir -p $output.extra_files_path; - - ## Dump the tool parameters into a JSON file - python $json_file parameters.json; - python $__tool_directory__/jbrowseArchiveCreator.py --data_json parameters.json -o $output + ## Dump the tool parameters into a JSON file + python2 $json_file parameters.json; + + python2 $__tool_directory__/jbrowseArchiveCreator.py --data_json parameters.json -o $output ]]></command> <configfiles> <configfile name="json_file"> @@ -54,7 +54,7 @@ #set array_inputs = [] #silent $array_inputs.append($data_dict) #silent $data_parameter_dict.update({$datatype: $array_inputs}) - #end if + #end if #end def ## Get the number of digits from tracks, to have a unique integer from group index and track index @@ -208,7 +208,7 @@ </valid> </sanitizer> </param> - </when> + </when> <when value="bed"> <conditional name="bedChoice"> <param name="bed_select" type="select" label="Bed Choice"> @@ -404,4 +404,4 @@ </help> <citations> </citations> -</tool> \ No newline at end of file +</tool>