Mercurial > repos > yating-l > jbrowsearchivecreator
view bigGenePred.as @ 13:43a700afd457 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit bcb239c4045d2c47a8acad5fbd29eea03663e187
author | yating-l |
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date | Tue, 19 Jun 2018 17:59:51 -0400 |
parents | 237707a6b74d |
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table bigGenePred "bigGenePred gene models" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name or ID of item, ideally both human readable and unique" uint score; "Score (0-1000)" char[1] strand; "+ or - for strand" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "RGB value (use R,G,B string in input file)" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" string name2; "Alternative/human readable name" string cdsStartStat; "Status of CDS start annotation (none, unknown, incomplete, or complete)" string cdsEndStat; "Status of CDS end annotation (none, unknown, incomplete, or complete)" int[blockCount] exonFrames; "Exon frame {0,1,2}, or -1 if no frame for exon" string type; "Transcript type" string geneName; "Primary identifier for gene" string geneName2; "Alternative/human readable gene name" string geneType; "Gene type" )