Mercurial > repos > yating-l > jbrowsearchivecreator
view tracks/HTMLFeatures.py @ 15:6464399df918 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit c69fafd096990eadcc380250703aefd919f80107
author | yating-l |
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date | Wed, 20 Jun 2018 17:43:26 -0400 |
parents | 3f9971a91096 |
children | 62dee5369e80 |
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#!/usr/bin/env python import json import logging from TrackDb import TrackDb from util import subtools from util import santitizer class HTMLFeatures(TrackDb): def __init__(self, trackName, trackLabel, trackDataURL, trackType, dataType, extraSettings=None): super(HTMLFeatures, self).__init__(trackName, trackLabel, trackDataURL, trackType, dataType, extraSettings) def prepareExtraSetting(self): """ set HTMLFeatures configuration options """ extraConfigs = dict() self.extraSettings["clientConfig"] = dict() self.extraSettings["config"] = dict() if 'type' in self.extraSettings: extraConfigs["type"] = self.extraSettings['type'] if 'color' in self.extraSettings and self.extraSettings['color']: extraConfigs['feature_color'] = self.extraSettings['color'] else: extraConfigs['feature_color'] = "#000000" #self.extraSettings['clientConfig']['color'] = self.extraSettings['color'] if 'subfeatureClasses' in self.extraSettings: subfeature_css_class = santitizer.sanitize_name(self.trackLabel + "_" + self.extraSettings['subfeatureClasses']) extraConfigs['subfeatureClasses'] = {self.extraSettings['subfeatureClasses']: subfeature_css_class} if 'category' not in self.extraSettings or not self.extraSettings['category']: self.extraSettings['config']['category'] = "Default group" else: self.extraSettings['config']['category'] = self.extraSettings['category'] if "menuTemplate" in self.extraSettings: self.extraSettings["clientConfig"]["menuTemplate"] = [{}, self.extraSettings["menuTemplate"]] #self.extraSettings["clentConfig"]["menuTemplate"] += [{"label" : "View details"}, {"label" : "Highlight this gene"}, self.extraSettings["menuTemplate"]] extraConfigs['config'] = json.dumps(self.extraSettings["config"]) extraConfigs['clientConfig'] = json.dumps(self.extraSettings["clientConfig"]) return extraConfigs