Mercurial > repos > yating-l > jbrowsearchivecreator
view trf_simpleRepeat.as @ 18:79b23a8afb15 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 398c2fd8d1cb38decddf8cd58574cf39b1b52eaa
author | yating-l |
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date | Fri, 20 Jul 2018 12:25:36 -0400 |
parents | 237707a6b74d |
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table simpleRepeat "Describes the Simple Tandem Repeats" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Simple Repeats tag name" uint period; "Length of repeat unit" float copyNum; "Mean number of copies of repeat" uint consensusSize; "Length of consensus sequence" uint perMatch; "Percentage Match" uint perIndel; "Percentage Indel" uint score; "Alignment Score = 2*match-7*mismatch-7*indel; minscore=50" uint A; "Percent of A's in repeat unit" uint C; "Percent of C's in repeat unit" uint G; "Percent of G's in repeat unit" uint T; "Percent of T's in repeat unit" float entropy; "Entropy" lstring sequence; "Sequence of repeat unit element" )