Mercurial > repos > yating-l > jbrowsearchivecreator
view spliceJunctions.as @ 9:7cb67cbbd8e5 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 753ca09582fe0148e538103f2c211f7caa182966
author | yating-l |
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date | Tue, 01 May 2018 23:01:06 -0400 |
parents | 237707a6b74d |
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table spliceJunctions "Predicted splice junctions" ( string chrom; "Reference sequence chromosome or scaffold" uint chromStart; "Start position in chromosome" uint chromEnd; "End position in chromosome" string name; "Name of item" uint score; "Score from 0-1000" char[1] strand; "+ or -" uint thickStart; "Start of where display should be thick (start codon)" uint thickEnd; "End of where display should be thick (stop codon)" uint reserved; "Used as itemRgb as of 2004-11-22" int blockCount; "Number of blocks" int[blockCount] blockSizes; "Comma separated list of block sizes" int[blockCount] chromStarts; "Start positions relative to chromStart" uint junctionScore; "Number of reads supporting the splice junction" )