Mercurial > repos > yating-l > jbrowsearchivecreator
view tracks/TrackStyles.py @ 10:e2ebf58c9068 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 8ace9ad3a69a56a9b0d5feae266f90301d9aac77
author | yating-l |
---|---|
date | Mon, 14 May 2018 21:37:50 -0400 |
parents | 237707a6b74d |
children | 62dee5369e80 |
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#!/usr/bin/env python import os import json import logging from mako.lookup import TemplateLookup class TrackStyles(object): def __init__(self, tool_directory, species_folder, trackListFile, cssFolderName="css", cssFileName="custom_track_styles.css"): self.logger = logging.getLogger(__name__) self.tool_directory = tool_directory self.species_folder = species_folder self.trackList = trackListFile self.cssFolderName = cssFolderName self.cssFileName = cssFileName self.cssFilePath = self._createCssFile() self.cssTemplate = self._getCssTemplate() self._addCssToTrackList() def addCustomColor(self, feature_class_name, feature_color): with open(self.cssFilePath, 'a+') as css: htmlMakoRendered = self.cssTemplate.render( label = feature_class_name, color = feature_color ) css.write(htmlMakoRendered) self.logger.debug("create customized track css class: cssFilePath= %s", self.cssFilePath) def _createCssFile(self): cssFolderPath = os.path.join(self.species_folder, self.cssFolderName) cssFilePath = os.path.join(cssFolderPath, self.cssFileName) if not os.path.exists(cssFilePath): if not os.path.exists(cssFolderPath): os.mkdir(cssFolderPath) os.mknod(cssFilePath) os.chmod(cssFilePath, 0o755) return cssFilePath def _getCssTemplate(self): mylookup = TemplateLookup(directories=[os.path.join(self.tool_directory, 'templates')], output_encoding='utf-8', encoding_errors='replace') cssTemplate = mylookup.get_template("custom_track_styles.css") return cssTemplate def _addCssToTrackList(self): with open(self.trackList, 'r+') as track: data = json.load(track) css_path = os.path.join('data', self.cssFolderName, self.cssFileName) data['css'] = {'url': css_path} json_string = json.dumps(data, indent=4, separators=(',', ': ')) track.seek(0) track.write(json_string) track.truncate() self.logger.debug("added customized css url to trackList.json")