# HG changeset patch
# User yating-l
# Date 1524857811 14400
# Node ID 56d9d10b4990fbe43c614a78f04ff1c7a2a28627
# Parent  5d5fdcb798da5220733432fe7ee07fd1fd189d38
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 2285eddcfe689d70d89571a045f204b74cc6890c

diff -r 5d5fdcb798da -r 56d9d10b4990 jbrowseArchiveCreator.xml
--- a/jbrowseArchiveCreator.xml	Fri Apr 20 13:51:23 2018 -0400
+++ b/jbrowseArchiveCreator.xml	Fri Apr 27 15:36:51 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.1">
+<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.2">
     <description>
         This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin
     </description>
diff -r 5d5fdcb798da -r 56d9d10b4990 tracks/CanvasFeatures.py
--- a/tracks/CanvasFeatures.py	Fri Apr 20 13:51:23 2018 -0400
+++ b/tracks/CanvasFeatures.py	Fri Apr 27 15:36:51 2018 -0400
@@ -24,7 +24,10 @@
         track['type'] = 'JBrowse/View/Track/' + self.trackType
         track['storeClass'] = 'JBrowse/Store/SeqFeature/GFF3Tabix'
         if self.dataType == 'gff':
+            # need .gff3.gz extension to index the name of the track with generate-name.pl
             track['urlTemplate'] = os.path.join('tracks', self.trackName + '.gff3.gz')
+            # needed to show match_part in Blat and Blast alignment as subfeatures
+            track['glyph'] = "JBrowse/View/FeatureGlyph/Segments"
         else:
             track['urlTemplate'] = os.path.join('tracks', self.trackName)
         track['label'] = self.trackLabel