# HG changeset patch # User yating-l # Date 1527959326 14400 # Node ID 9161beae834fb4193288ea49a19ccb1c1752c996 # Parent 8886033b4f84e620353ddbf7df2834bc579c835b planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 08f15daf5442def561713fb9c673bb06c9a3a05f diff -r 8886033b4f84 -r 9161beae834f datatypes/__init__.pyc Binary file datatypes/__init__.pyc has changed diff -r 8886033b4f84 -r 9161beae834f datatypes/converters/__init__.pyc Binary file datatypes/converters/__init__.pyc has changed diff -r 8886033b4f84 -r 9161beae834f datatypes/converters/gtfToGff3.pyc Binary file datatypes/converters/gtfToGff3.pyc has changed diff -r 8886033b4f84 -r 9161beae834f datatypes/validators/DataValidation.pyc Binary file datatypes/validators/DataValidation.pyc has changed diff -r 8886033b4f84 -r 9161beae834f datatypes/validators/GtfValidation.py --- a/datatypes/validators/GtfValidation.py Mon May 14 23:30:31 2018 -0400 +++ b/datatypes/validators/GtfValidation.py Sat Jun 02 13:08:46 2018 -0400 @@ -74,7 +74,7 @@ start_position = fields[3] end_position = fields[4] - if start_position > 0 and end_position <= scaffold_size: + if int(start_position) > 0 and int(end_position) <= int(scaffold_size): # We are good, so we copy this line tmp.write(line) tmp.write(os.linesep) diff -r 8886033b4f84 -r 9161beae834f datatypes/validators/GtfValidation.pyc Binary file datatypes/validators/GtfValidation.pyc has changed diff -r 8886033b4f84 -r 9161beae834f datatypes/validators/__init__.pyc Binary file datatypes/validators/__init__.pyc has changed diff -r 8886033b4f84 -r 9161beae834f jbrowseArchiveCreator.xml --- a/jbrowseArchiveCreator.xml Mon May 14 23:30:31 2018 -0400 +++ b/jbrowseArchiveCreator.xml Sat Jun 02 13:08:46 2018 -0400 @@ -1,4 +1,4 @@ - + This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin diff -r 8886033b4f84 -r 9161beae834f util/__init__.pyc Binary file util/__init__.pyc has changed diff -r 8886033b4f84 -r 9161beae834f util/subtools.pyc Binary file util/subtools.pyc has changed