# HG changeset patch
# User yating-l
# Date 1492094172 14400
# Node ID ac83821b0e065416dd53c0ae76e3feae73b14fdc
# Parent  804a93e87cc8ef7355bb9bd567b2f414872705b9
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit bd7c7df707bfbcfa317c30caed48734d027dd889-dirty

diff -r 804a93e87cc8 -r ac83821b0e06 README.md
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.md	Thu Apr 13 10:36:12 2017 -0400
@@ -0,0 +1,52 @@
+# JBrowse Hub Creator
+This Galaxy tool permits to prepare your files to be ready for JBrowse visualization.
+
+## Features
+1. Similar interface to Hub Archive Creator.
+2. Convert tracks to GFF3 datatypes (e.g Blastxml => GFF3) in order to import feature data from the flat files
+3. Generate a zip file including all the tracks and configuration for JBrowse visualization
+4. Group the tracks 
+5. Set the color for each track
+6. Set the label for each track
+7. Create workflows within Galaxy to automatize pipeline analysis and get them ready to visualization inside JBrowse...in a few clicks!
+
+At the moment, Supported datatypes are:
+- Bam
+- Bed 
+  - Splice Junctions (BED 12+1)
+  - Simple Repeats (BED 4+12)
+- BigWig
+- Gff3
+- Gtf
+- Blastxml
+
+## Installation:
+1. You would need to add this tool into your Galaxy.
+  1. (strongly preferred) **ToolShed Installation**: Tool is in [testtoolshed](https://testtoolshed.g2.bx.psu.edu/view/yating-l/jbrowse_hub/b7bf45272ab7)
+  2. OR **Local Installation**: See https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial
+2. The tool can be used with or without Conda (activate it in your galaxy.ini)
+3. If installed without TS (by downloading on GitHub), you need to have all the binaries accessible within Galaxy.
+   You can use the script [install_linux_binaries](util/install_linux_binaries) with a linux x86-64 (64bits)
+
+## Future
+See [TODO.md](todo.md) for more information
+
+## Contribute
+
+- Source Code: https://github.com/Yating-L/jbrowse_hub
+
+## Support
+
+If you are having issues, please let us know.
+
+- For more information about how to use G-OnRamp:
+    - [Wilson Leung](wleung@wustl.edu) - Product owner and developer
+    - [Yating Liu](yliu41@wustl.edu) - Community manager and Developer
+
+- For more information about the project vision, or for partneship:
+    - [Elgin, Sarah](selgin@wustl.edu) - PI
+    - [Jeremy Goecks](jgoecks@gwu.edu) - PI
+    
+## License
+
+The project is licensed under the Academic Free License 3.0. See [LICENSE.txt](LICENSE.txt).
diff -r 804a93e87cc8 -r ac83821b0e06 jbrowse_hub.xml
--- a/jbrowse_hub.xml	Wed Apr 12 17:41:55 2017 -0400
+++ b/jbrowse_hub.xml	Thu Apr 13 10:36:12 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="jbrowse_hub" name="JBrowse Hub Creator" version="1.0">
+<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="1.0">
     <description>
         This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse
     </description>