# HG changeset patch
# User yating-l
# Date 1526348270 14400
# Node ID e2ebf58c906857cca92eaef63e0059a8b15f60f7
# Parent  7cb67cbbd8e5415e4005e2b774aa63615982b7fa
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 8ace9ad3a69a56a9b0d5feae266f90301d9aac77

diff -r 7cb67cbbd8e5 -r e2ebf58c9068 datatypes/converters/blastxmlToGff3.py
--- a/datatypes/converters/blastxmlToGff3.py	Tue May 01 23:01:06 2018 -0400
+++ b/datatypes/converters/blastxmlToGff3.py	Mon May 14 21:37:50 2018 -0400
@@ -65,6 +65,7 @@
             group['parent_field']['source'] = source
             group['parent_field']['type'] = 'match'
             group['parent_attribute']['ID'] = contig_name + '_' + query_name
+            group['parent_attribute']['Name'] = query_name
             group['parent_attribute']['method'] = method
             group['parent_attribute']['length'] = length
             if contig_name not in seq_regions:
diff -r 7cb67cbbd8e5 -r e2ebf58c9068 jbrowseArchiveCreator.xml
--- a/jbrowseArchiveCreator.xml	Tue May 01 23:01:06 2018 -0400
+++ b/jbrowseArchiveCreator.xml	Mon May 14 21:37:50 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.2">
+<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.1.3">
     <description>
         This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin
     </description>
diff -r 7cb67cbbd8e5 -r e2ebf58c9068 tracks/CanvasFeatures.py
--- a/tracks/CanvasFeatures.py	Tue May 01 23:01:06 2018 -0400
+++ b/tracks/CanvasFeatures.py	Mon May 14 21:37:50 2018 -0400
@@ -30,6 +30,8 @@
             track['glyph'] = "JBrowse/View/FeatureGlyph/Segments"
         else:
             track['urlTemplate'] = os.path.join('tracks', self.trackName)
+        if 'subfeatureClasses' in self.extraSettings:
+            track['subfeatureClasses'] = self.extraSettings['subfeatureClasses']
         track['label'] = self.trackLabel
         track['category'] = self.extraSettings['category']
         track['style'] = self.extraSettings['style']