Mercurial > repos > yating-l > jbrowsearchivecreator
changeset 15:6464399df918 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit c69fafd096990eadcc380250703aefd919f80107
| author | yating-l |
|---|---|
| date | Wed, 20 Jun 2018 17:43:26 -0400 |
| parents | 3f9971a91096 |
| children | 8bcec8dbb8be |
| files | jbrowseArchiveCreator.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/jbrowseArchiveCreator.xml Wed Jun 20 17:24:45 2018 -0400 +++ b/jbrowseArchiveCreator.xml Wed Jun 20 17:43:26 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.3.0"> +<tool id="jbrowse_hub" name="JBrowse Archive Creator" version="2.3.1"> <description> This Galaxy tool is used to prepare your files to be ready for displaying on JBrowse with Apollo plugin </description> @@ -199,6 +199,7 @@ type="data" label="BAM File" /> + <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> <param name="longLabel" type="text" size="30" value = "Sequence Alignment" label="Track label" /> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -207,7 +208,6 @@ </valid> </sanitizer> </param> - <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> </when> <when value="bed"> <conditional name="bedChoice"> @@ -296,6 +296,7 @@ <option value="FlyBase">FlyBase</option> <option value="Others">Others</option> </param> + <param name="nameIndex" type="boolean" checked="true" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> <param name="longLabel" type="text" size="30" value="Blast Alignment" label="Track label" /> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -304,7 +305,6 @@ </valid> </sanitizer> </param> - <param name="nameIndex" type="boolean" checked="true" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> </when> <when value="bigwig"> <param @@ -313,6 +313,7 @@ type="data" label="BIGWIG File" /> + <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> <param name="longLabel" type="text" size="30" value="Sequence Coverage" label="Track label" /> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -321,7 +322,6 @@ </valid> </sanitizer> </param> - <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> </when> <when value="gff3"> <param @@ -330,6 +330,7 @@ type="data" label="GFF3 File" /> + <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> <param name="longLabel" type="text" size="30" value="Gene Prediction" label="Track name" /> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -338,7 +339,6 @@ </valid> </sanitizer> </param> - <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> </when> <when value="gtf"> <param @@ -347,6 +347,7 @@ type="data" label="GTF File" /> + <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> <param name="longLabel" type="text" size="30" value="Assembled Transcripts" label="Track name" /> <param name="track_color" type="color" label="Track color" value="#000000"> <sanitizer> @@ -355,7 +356,6 @@ </valid> </sanitizer> </param> - <param name="nameIndex" type="boolean" label="Do you want to builds name indexes for this track to enable search for a feature by name" /> </when> </conditional> </repeat>