Mercurial > repos > yating-l > jbrowsearchivecreator
changeset 9:7cb67cbbd8e5 draft
planemo upload for repository https://github.com/goeckslab/jbrowse-archive-creator.git commit 753ca09582fe0148e538103f2c211f7caa182966
| author | yating-l |
|---|---|
| date | Tue, 01 May 2018 23:01:06 -0400 |
| parents | 56d9d10b4990 |
| children | e2ebf58c9068 |
| files | datatypes/interval/BedBlastAlignments.py jbrowseArchiveCreator.xml tool_dependencies.xml |
| diffstat | 3 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/datatypes/interval/BedBlastAlignments.py Fri Apr 27 15:36:51 2018 -0400 +++ b/datatypes/interval/BedBlastAlignments.py Tue May 01 23:01:06 2018 -0400 @@ -14,7 +14,7 @@ super(BedBlastAlignments, self).__init__(input_bed_blast_alignments_false_path, data_bed_blast_alignments) #self.seqType = 1 - self.trackType = "G-OnRamp_plugin/BlastAlignment" + #self.trackType = "G-OnRamp_plugin/BlastAlignment" def initSettings(self): super(BedBlastAlignments, self).initSettings()
--- a/jbrowseArchiveCreator.xml Fri Apr 27 15:36:51 2018 -0400 +++ b/jbrowseArchiveCreator.xml Tue May 01 23:01:06 2018 -0400 @@ -7,6 +7,7 @@ </macros> <requirements> <requirement type="package" version="1.2">samtools</requirement> + <requirement type="package" version="0.2.6">tabix</requirement> <requirement type="package" version="1.9">numpy</requirement> <requirement type="package" version="1.68">biopython</requirement> <requirement type="package" version="340">ucsc_hac</requirement>
--- a/tool_dependencies.xml Fri Apr 27 15:36:51 2018 -0400 +++ b/tool_dependencies.xml Tue May 01 23:01:06 2018 -0400 @@ -4,6 +4,10 @@ <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> + <package name="tabix" version="0.2.6"> + <repository changeset_revision="389d2376b60b" name="package_tabix_0_2_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ucsc_hac" version="340"> <repository changeset_revision="1a15120c22c8" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" /> </package>