Mercurial > repos > yating-l > package_ucsc_hac_340

changeset 0:a819439b6d76 draft

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planemo upload commit d476446dd23645b740023fe2abacabeefca4c5a1
author yating-l
date Wed, 31 May 2017 11:33:10 -0400
parents
children 1a15120c22c8
files tool_dependencies.xml
diffstat 1 files changed, 37 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed May 31 11:33:10 2017 -0400
@@ -0,0 +1,37 @@
+<?xml version="1.0" ?>
+<tool_dependency>
+    <package name="ucsc_hac" version="340">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url" sha256sum="c18fcb8ed0468dff74c6392b929be532aab777db1c2a8d1d9d83f94f585602d5">http://old-gep.wustl.edu/~galaxy/packages/ucsc_hac_340_macOS_x86_64.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url" sha256sum="13ad4c6bdc0ed669446dea0cc7ab3db0877ea844665485ea93c3f16c96e408a4">http://old-gep.wustl.edu/~galaxy/packages/ucsc_hac_340_linux_x86_64.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+         </install>
+         <readme>The well known UCSC tools from Jim Kent. This subset of UCSC tools are used for HubArchiveCreator, including 
+         - bedGraphToBigWig
+         - bedToBigBed
+         - gff3ToGenePred
+         - gtfToGenePred
+         - genePredToBed
+         - genePredToBigGenePred
+         - faToTwoBit
+         - pslToBigPsl
+         - twoBitInfo
+         </readme>
+    </package>
+</tool_dependency>