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comparison rename_tracks.py @ 1:72ccb2f848a0 draft default tip

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planemo upload commit 869adf4bb92923a8a5cb0d62ae40cdab9bf6e1d7
author yating-l
date Thu, 26 Jul 2018 15:16:02 -0400
parents 8b19a698d90e
children
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0:8b19a698d90e 1:72ccb2f848a0
12 writer = open(renamedFile, 'w') 12 writer = open(renamedFile, 'w')
13 with open(inputFile, 'r') as f: 13 with open(inputFile, 'r') as f:
14 lines = f.readlines() 14 lines = f.readlines()
15 for l in lines: 15 for l in lines:
16 if not l.startswith("#"): 16 if not l.startswith("#"):
17 scaffold_name = l.split()[0] 17 scaffold_name = l.split('\t')[0]
18 if scaffold_name in nameDict: 18 if scaffold_name in nameDict:
19 l = l.replace(scaffold_name, nameDict[scaffold_name]) 19 l = l.replace(scaffold_name, nameDict[scaffold_name])
20 writer.write(l) 20 writer.write(l)
21 writer.close() 21 writer.close()
22 22