Mercurial > repos > yating-l > trfbig
comparison trfBig.xml @ 0:ba819b65bef3 draft default tip
planemo upload for repository https://github.com/goeckslab/trfBig commit 97fd3895fbafc69df1a1c4092f261ba23fc0bd0b-dirty
| author | yating-l |
|---|---|
| date | Mon, 01 May 2017 17:34:42 -0400 |
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| -1:000000000000 | 0:ba819b65bef3 |
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| 1 <tool id="trfBig" name="TrfBig" version="0.1.0"> | |
| 2 <description>trfBig - Mask tandem repeats on a big sequence file</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="4.07b">trf</requirement> | |
| 5 <!--<requirement type="package" version="324">ucsc-trfbig</requirement>--> | |
| 6 <requirement type="package" version="1.0">trfBig</requirement> | |
| 7 </requirements> | |
| 8 <stdio> | |
| 9 <exit_code range="1:" /> | |
| 10 </stdio> | |
| 11 <command> | |
| 12 trfBig -bedAt=$output $input /dev/null | |
| 13 </command> | |
| 14 <inputs> | |
| 15 <param format="fasta" name="input" type="data" /> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data format="bed" name="output" /> | |
| 19 </outputs> | |
| 20 <help> | |
| 21 This will repeatedly run trf to mask tandem repeats in infile | |
| 22 and put masked results in outFile. inFile and outFile can be .fa | |
| 23 or .nib format. Outfile can be .bed as well. Sequence output is hard | |
| 24 masked, lowercase. | |
| 25 </help> | |
| 26 </tool> |