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comparison test-data/contig1.fasta.extraspace.out @ 0:fb318f9a36f3 draft default tip

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planemo upload commit c1f0c5ceaac87b6b1db12160a8f5b287635db61b
author yating-l
date Thu, 01 Jun 2017 14:10:35 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:fb318f9a36f3
1 SW perc perc perc query position in query matching repeat position in repeat
2 score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
3
4 2239 13.1 11.2 0.7 contig1 7 452 (44727) C rnd-4_family-146 RC/Helitron (320) 924 432 1
5 1795 13.4 12.0 1.2 contig1 224 631 (44548) + rnd-1_family-0 RC/Helitron 9 460 (0) 2 *
6 309 28.3 5.6 4.0 contig1 5522 5646 (39533) C rnd-5_family-2216 RC/Helitron (185) 457 331 3
7 565 19.4 1.6 1.6 contig1 6493 6618 (38561) + rnd-1_family-2 RC/Helitron 2 127 (29) 4
8 267 9.8 13.7 0.0 contig1 6685 6735 (38444) + rnd-1_family-31 RC/Helitron 1 58 (0) 5 *
9 2033 5.7 4.2 0.0 contig1 6702 6963 (38216) + rnd-4_family-146 RC/Helitron 44 316 (928) 6 *
10 2466 14.1 4.2 2.8 contig1 6768 7489 (37690) C rnd-4_family-146 RC/Helitron (0) 1244 351 7
11 317 13.8 0.0 0.0 contig1 7498 7555 (37624) + rnd-1_family-99 Unknown 82 139 (1) 8
12 271 10.9 0.0 0.0 contig1 7516 7561 (37618) C rnd-1_family-99 Unknown (86) 54 9 9 *
13 639 13.4 0.0 0.0 contig1 7560 7656 (37523) + rnd-1_family-34 Unknown 92 188 (0) 10 *
14 1471 16.2 3.0 0.0 contig1 7653 7917 (37262) C rnd-5_family-8111 Unknown (129) 273 1 11
15 465 22.9 3.1 6.2 contig1 8032 8252 (36927) C rnd-1_family-4 RC/Helitron (0) 196 1 12 *
16 793 4.2 0.0 0.0 contig1 8234 8328 (36851) C rnd-1_family-7 RC/Helitron (2) 140 46 13
17 747 10.1 7.6 0.0 contig1 8325 8443 (36736) C rnd-1_family-2 RC/Helitron (25) 131 4 14 *
18 1621 12.6 5.3 2.8 contig1 8906 9259 (35920) + rnd-4_family-146 RC/Helitron 72 319 (925) 15 *
19 2224 12.4 8.7 2.1 contig1 9105 9541 (35638) C rnd-4_family-146 RC/Helitron (207) 1037 572 16 *
20 2442 7.1 11.9 1.7 contig1 9294 9706 (35473) + rnd-1_family-0 RC/Helitron 6 460 (0) 17
21 308 7.0 0.0 0.0 contig1 9954 9996 (35183) + rnd-5_family-8111 Unknown 2 44 (358) 18
22 660 18.8 8.3 0.0 contig1 10019 10151 (35028) + rnd-5_family-8111 Unknown 186 329 (73) 19
23 1661 18.1 9.3 3.6 contig1 10159 10576 (34603) C rnd-4_family-306 Unknown (78) 468 27 20
24 1521 12.2 14.9 1.3 contig1 10577 10891 (34288) C rnd-4_family-146 RC/Helitron (532) 712 355 21
25 555 10.0 0.0 0.0 contig1 10899 10978 (34201) + rnd-1_family-211 Unknown 2 81 (20) 22
26 356 15.7 30.0 0.0 contig1 11135 11262 (33917) C rnd-4_family-146 RC/Helitron (1085) 159 2 21
27 307 25.5 4.2 2.1 contig1 11920 12015 (33164) C rnd-4_family-1925 Unknown (0) 260 163 23
28 436 23.6 0.0 1.1 contig1 13661 13750 (31429) + rnd-5_family-288 Unknown 49 137 (340) 24
29 313 24.7 6.4 1.1 contig1 14089 14182 (30997) + rnd-5_family-288 Unknown 163 261 (216) 24
30 524 13.0 1.0 1.0 contig1 14660 14760 (30419) + rnd-5_family-128 Unknown 92 192 (167) 25
31 350 10.0 0.0 0.0 contig1 14801 14850 (30329) C rnd-1_family-420 Unknown (84) 50 1 26
32 305 18.9 2.6 3.9 contig1 15797 15873 (29306) C rnd-5_family-3538 Unknown (2) 178 103 27
33 536 12.4 22.8 2.3 contig1 15946 16116 (29063) + rnd-5_family-107 RC/Helitron 291 496 (99) 28
34 329 10.4 0.0 0.0 contig1 16127 16174 (29005) + rnd-1_family-40 Unknown 1 48 (0) 29 *
35 1758 8.6 0.8 9.2 contig1 16132 16440 (28739) + rnd-4_family-146 RC/Helitron 17 270 (974) 30
36 1149 9.8 9.6 2.1 contig1 16285 16472 (28707) C rnd-4_family-146 RC/Helitron (9) 1235 1034 31 *
37 918 10.3 3.1 2.5 contig1 16445 16604 (28575) + rnd-3_family-10 DNA/TcMar-Mariner 1251 1411 (10) 32 *
38 788 20.9 9.3 1.5 contig1 16627 16830 (28349) C rnd-4_family-1925 Unknown (36) 224 5 33
39 1054 12.7 6.8 4.7 contig1 16854 17099 (28080) C rnd-2_family-29 RC/Helitron (290) 269 1 34
40 318 14.6 0.0 0.0 contig1 17626 17680 (27499) + rnd-5_family-5175 LINE/Jockey 3 57 (1063) 35
41 767 12.5 0.0 1.5 contig1 17799 17928 (27251) + rnd-1_family-410 LINE/Jockey 1 128 (2) 36
42 2149 34.5 9.2 0.2 contig1 17932 18451 (26728) + rnd-5_family-5175 LINE/Jockey 337 903 (217) 35
43 1172 7.4 0.0 0.0 contig1 18454 18601 (26578) + rnd-1_family-426 Unknown 1 148 (0) 37
44 387 17.1 7.9 0.0 contig1 18684 18759 (26420) + rnd-1_family-247 LINE/Jockey 130 211 (11) 38
45 2237 10.4 1.2 1.2 contig1 18798 19119 (26060) + rnd-4_family-608 LINE/Jockey 3 324 (15) 39
46 988 17.4 9.0 1.7 contig1 19717 19950 (25229) C rnd-2_family-32 RC/Helitron (492) 251 1 40
47 555 11.6 29.3 0.0 contig1 19883 20041 (25138) + rnd-4_family-146 RC/Helitron 1034 1239 (5) 41 *
48 2025 12.0 8.8 0.0 contig1 20210 20551 (24628) C rnd-5_family-4539 LTR/Pao (2) 1687 1316 42
49 534 11.6 0.0 1.1 contig1 20548 20634 (24545) + rnd-1_family-3 RC/Helitron 24 109 (144) 43 *
50 784 6.2 0.0 0.0 contig1 20656 20752 (24427) + rnd-1_family-1 RC/Helitron 1 97 (57) 44 *
51 2272 8.1 4.5 1.2 contig1 20752 21214 (23965) C rnd-4_family-146 RC/Helitron (35) 1209 674 45
52 291 20.7 0.0 0.0 contig1 21240 21297 (23882) + rnd-5_family-107 RC/Helitron 136 193 (402) 46
53 660 6.6 1.1 0.0 contig1 21327 21417 (23762) + rnd-5_family-616 Unknown 40 131 (0) 47
54 1084 11.0 15.2 1.4 contig1 21420 21666 (23513) C rnd-1_family-128 Unknown (22) 290 41 48
55 302 10.0 0.0 0.0 contig1 21649 21688 (23491) + rnd-1_family-482 Unknown 1 40 (26) 49 *
56 373 18.0 1.2 17.8 contig1 21724 21892 (23287) + rnd-5_family-6703 LTR/Pao 617 757 (170) 50
57 1099 5.0 5.0 0.0 contig1 23293 23432 (21747) C rnd-1_family-120 Unknown (0) 147 1 51
58 342 4.5 0.0 2.2 contig1 23433 23477 (21702) C rnd-1_family-120 Unknown (103) 44 1 52 *
59 449 10.9 0.0 0.0 contig1 23439 23502 (21677) + rnd-1_family-89 Unknown 84 147 (0) 53
60 289 22.2 0.0 0.0 contig1 23471 23533 (21646) + rnd-1_family-73 Unknown 228 290 (0) 54 *
61 1039 7.6 0.0 0.0 contig1 23546 23676 (21503) C rnd-1_family-73 Unknown (13) 277 147 55
62 341 17.2 0.0 0.0 contig1 25930 25987 (19192) + rnd-5_family-288 Unknown 78 135 (342) 56
63 3595 11.8 3.2 2.6 contig1 26122 26706 (18473) C rnd-5_family-2216 RC/Helitron (3) 639 51 57
64 285 17.4 0.0 0.0 contig1 27016 27061 (18118) + rnd-5_family-5558 Unknown 126 171 (269) 58
65 301 12.2 0.0 5.8 contig1 27183 27234 (17945) + rnd-1_family-1 RC/Helitron 2 50 (104) 59 *
66 658 17.9 0.0 0.9 contig1 27231 27343 (17836) + rnd-4_family-146 RC/Helitron 89 200 (1044) 60
67 310 22.4 1.2 1.2 contig1 27348 27431 (17748) + rnd-1_family-0 RC/Helitron 107 190 (270) 61
68 9350 2.2 3.0 0.1 contig1 27432 28732 (16447) + rnd-3_family-10 DNA/TcMar-Mariner 1 1201 (220) 62
69 471 22.3 1.8 6.5 contig1 28734 28901 (16278) + rnd-1_family-0 RC/Helitron 241 400 (60) 61
70 1226 9.7 5.0 7.2 contig1 29003 29349 (15830) + rnd-1_family-1 RC/Helitron 1 317 (927) 63 *
71 4453 9.9 0.6 0.7 contig1 29146 29828 (15351) C rnd-4_family-146 RC/Helitron (208) 1036 355 64
72 283 15.6 0.0 0.0 contig1 30091 30135 (15044) + rnd-4_family-108 RC/Helitron 66 110 (343) 65
73 753 22.9 11.4 3.3 contig1 30179 30449 (14730) + rnd-5_family-2216 RC/Helitron 310 602 (40) 66
74 367 22.4 3.6 4.5 contig1 30475 30586 (14593) + rnd-1_family-3 RC/Helitron 80 190 (63) 67
75 315 8.2 2.0 0.0 contig1 30564 30612 (14567) + rnd-1_family-4 RC/Helitron 90 139 (57) 68 *
76 327 28.2 4.8 5.5 contig1 30861 31025 (14154) + rnd-4_family-1925 Unknown 97 260 (0) 69
77 478 12.2 13.3 0.0 contig1 35887 35976 (9203) C rnd-5_family-2216 RC/Helitron (14) 628 527 70
78 465 15.6 3.1 14.2 contig1 36021 36147 (9032) C rnd-4_family-108 RC/Helitron (307) 146 34 71
79 297 20.6 1.4 0.0 contig1 36361 36433 (8746) + rnd-3_family-10 DNA/TcMar-Mariner 1305 1378 (43) 72
80 285 21.0 6.2 0.0 contig1 36376 36456 (8723) + rnd-2_family-32 RC/Helitron 260 345 (398) 73 *
81 305 11.8 2.0 0.0 contig1 37138 37188 (7991) C rnd-1_family-0 RC/Helitron (395) 65 14 74
82 906 10.8 12.7 0.6 contig1 37201 37358 (7821) C rnd-4_family-146 RC/Helitron (1052) 192 16 75
83 285 11.6 0.0 0.0 contig1 37378 37420 (7759) C rnd-5_family-2216 RC/Helitron (17) 625 583 76 *
84 795 15.9 4.8 1.1 contig1 37413 37631 (7548) C rnd-2_family-29 RC/Helitron (306) 253 2 70
85 807 5.7 1.9 0.0 contig1 37667 37772 (7407) C rnd-1_family-53 Unknown (0) 112 5 77
86 430 13.6 4.5 1.1 contig1 37848 37936 (7243) C rnd-2_family-32 RC/Helitron (74) 669 578 78 *
87 1235 8.6 2.1 0.5 contig1 37935 38122 (7057) + rnd-4_family-146 RC/Helitron 674 864 (380) 79
88 1194 16.9 24.0 0.8 contig1 38004 38361 (6818) C rnd-2_family-32 RC/Helitron (149) 594 154 78 *
89 1598 10.2 5.5 8.4 contig1 38362 38831 (6348) + rnd-4_family-146 RC/Helitron 43 356 (888) 80
90 1291 9.2 0.0 0.0 contig1 38770 38954 (6225) C rnd-2_family-32 RC/Helitron (83) 660 476 81 *
91 693 8.0 5.3 0.9 contig1 39581 39694 (5485) + rnd-3_family-10 DNA/TcMar-Mariner 1296 1414 (7) 82 *
92 2674 10.1 0.7 1.9 contig1 39636 40096 (5083) + rnd-4_family-146 RC/Helitron 248 763 (481) 83
93 1535 4.9 0.0 1.6 contig1 40095 40281 (4898) C rnd-2_family-19 RC/Helitron (43) 184 1 84 *
94 2609 13.1 4.0 0.4 contig1 40279 40731 (4448) C rnd-4_family-146 RC/Helitron (235) 1009 541 85 *
95 2729 8.5 4.0 0.2 contig1 40439 40861 (4318) + rnd-1_family-0 RC/Helitron 21 459 (1) 86
96 349 26.1 0.8 2.5 contig1 42871 42992 (2187) + rnd-4_family-146 RC/Helitron 539 658 (586) 87
97 318 21.6 15.9 0.0 contig1 43030 43117 (2062) C rnd-4_family-146 RC/Helitron (1073) 171 70 85
98 260 23.5 0.0 1.4 contig1 43192 43260 (1919) C rnd-1_family-0 RC/Helitron (281) 179 112 88
99 446 14.5 0.0 0.0 contig1 43299 43367 (1812) C rnd-1_family-53 Unknown (2) 110 42 89
100 421 21.4 12.7 0.0 contig1 43323 43448 (1731) + rnd-5_family-8111 Unknown 105 246 (156) 90 *
101 431 16.2 0.0 0.0 contig1 43482 43561 (1618) C rnd-1_family-99 Unknown (56) 84 5 91 *
102 595 14.3 0.0 0.0 contig1 43533 43630 (1549) C rnd-1_family-50 Unknown (0) 128 31 92
103 1122 16.0 6.8 0.0 contig1 43634 43839 (1340) + rnd-4_family-146 RC/Helitron 64 283 (961) 93