diff tool_dependencies.xml @ 7:10f3a5b6f2ac draft

planemo upload commit 964ceec6b1c6371b10923c7d49446b1361fc5895-dirty
author yating-l
date Mon, 09 Jul 2018 13:07:54 -0400
parents 951076264957
children a9d863528f48
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 09 13:07:54 2018 -0400
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <!-- required tools:
+        - blat
+        - sort
+        - pslReps
+        - faPolyASizes
+        - pslCDnaFilter
+    -->
+    <package name="ucsc_tools_340_for_BLAT" version="1.0">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/package_ucsc_tools_340_for_BLAT.tar.gz</action>
+                    <action type="move_directory_files">
+                        <source_directory>.</source_directory>
+                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                    </action>
+                </actions>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>The tools and utilities were created by the UCSC Genome Bioinformatics Group</readme>
+    </package>
+</tool_dependency>
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