Mercurial > repos > yating-l > ucsc_blat
diff test-data/all_fasta.loc @ 11:2a89f630fa85 draft
planemo upload commit 3bb07d25ab817c936018d57b6d81f728915cfadf
author | iuc |
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date | Fri, 02 Dec 2022 09:35:54 +0000 |
parents | eb7fcec3fdba |
children |
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--- a/test-data/all_fasta.loc Mon Nov 21 11:12:14 2022 +0000 +++ b/test-data/all_fasta.loc Fri Dec 02 09:35:54 2022 +0000 @@ -1,30 +1,2 @@ -#This is a sample file distributed with Galaxy that enables tools -#to use a directory of Samtools indexed sequences data files. You will need -#to create these data files and then create a fasta_indexes.loc file -#similar to this one (store it in this directory) that points to -#the directories in which those files are stored. The fasta_indexes.loc -#file has this format (white space characters are TAB characters): -# -# <unique_build_id> <dbkey> <display_name> <file_base_path> -# -#So, for example, if you had hg19 Canonical indexed stored in -# -# /depot/data2/galaxy/hg19/sam/, -# -#then the fasta_indexes.loc entry would look like this: -# -#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa -# -#and your /depot/data2/galaxy/hg19/sam/ directory -#would contain hg19canon.fa and hg19canon.fa.fai files. -# -#Your fasta_indexes.loc file should include an entry per line for -#each index set you have stored. The file in the path does actually -#exist, but it should never be directly used. Instead, the name serves -#as a prefix for the index file. For example: -# -#hg18canon hg18 Human (Homo sapiens): hg18 Canonical /depot/data2/galaxy/hg18/sam/hg18canon.fa -#hg18full hg18 Human (Homo sapiens): hg18 Full /depot/data2/galaxy/hg18/sam/hg18full.fa -#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /depot/data2/galaxy/hg19/sam/hg19canon.fa -#hg19full hg19 Human (Homo sapiens): hg19 Full /depot/data2/galaxy/hg19/sam/hg19full.fa -dbia3 dm3 Dbia3 /home/galaxy/galaxy/tool-data/dm3/seq/dbia3.fa \ No newline at end of file +dbia3 dbia3_dbkey dbdia display name ${__HERE__}/dbia3/dbia3.fa +