--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/amaVit1_Gallus/amaVit1_Gallus_gallus_sorted.maf	Fri Dec 02 09:35:54 2022 +0000
@@ -0,0 +1,609 @@
+##maf version=1 scoring=blastz
+a score=7638.000000
+s LMAW01000001.1 10027590 110 + 10443977 cgcggtcgggctgggctgggcacggcgcggtacggtgcggccggggcatcatgaaccgcttcaaggcgtccaagttccggcacaccgaggcccggccgcctcgcagggag
+s NM_001006176        296 110 +     3248 cggggcggggctgagggcggcgcggcgcggcgcggcggtcccggcgcaccatgaaccgcttcaaggcgtccaagttccggcacaccgaggcccggctgccccgcagggag
+
+a score=3442.000000
+s LMAW01000001.1 10031154 48 + 10443977 gcctggattgggggtattcgagcaggctccatcacatcctatgggaac
+s NM_001006176        406 48 +     3248 gcctggattgggggtctccgagccagctctgttgcatcctatgggaac
+
+a score=964.000000
+s LMAW01000001.1 10031353 10 + 10443977 catgtggagg
+s NM_001006176        454 10 +     3248 catgtggagg
+
+a score=6198.000000
+s LMAW01000001.1 10031517 76 + 10443977 ggtgtgctgggcattgtgccactggagtgcgaggatggaggcaagaggaccgtgtctcagctgtgctgccactcag
+s NM_001006176        502 76 +     3248 ggagtgctgggcatcgtgccactggagggcagggacggaggcaagaggaccgtgtctcagctctgctgccactcag
+
+a score=4483.000000
+s LMAW01000001.1 10033261 75 + 10443977 atgtggtgacagactttgatttctcaccattcgatcagctcctcctggctactggctctgcagatgagaccgtga
+s NM_001006176        578 75 +     3248 atgcagtgacagactttgacttctcaccctttgacccattcctgctggccacaggctccgctgatgaaatggtga
+
+a score=9006.000000
+s LMAW01000001.1 10033696 152 + 10443977 aggtgtggcgcctgccccagagcagccaggacatacccagcggtgcagggctgaccctgggccccgggggggccccagtggacatgctgcagttccaccccacagcggacggcatcctggcgagtggcacagggaagagagtcaccatctgg
+s NM_001006176        653 152 +     3248 aggtttggcgcctgcctgaggaaggccaggagctgcccagcagtgcagggctgatgttgggtcctggtgggggcacagtggacatgctgcagtttcacccaacggcagatggcatcctgaccagtggtgtgggaaagcgggtcactgtgtgg
+
+a score=3491.000000
+s LMAW01000001.1 10034454 66 + 10443977 cacagggannnnnnnnnnnnnnnnnnntggaagcgagacggcagcctgctcggcacctcctgcaag
+s NM_001006176        844 66 +     3248 catggggaccagctgcagagcctatcctggaagcatgatggccgcctgcttggcacctcctgcaag
+
+a score=4230.000000
+s LMAW01000001.1 10035646 51 + 10443977 gacaagaaactgcggatctttgacccacgagtcagcccagctgcttcccag
+s NM_001006176        910 51 +     3248 gacaagaaactgcggatccttgaccctcgagccagcccagctgcatcccag
+
+a score=7235.000000
+s LMAW01000001.1 10043484 87 + 10443977 agtgtcctgggacacgagaacaacaaggactcccggctgctctggatgggctccagcgattgcctcatctccatcgggttcagccag
+s NM_001006176        961 87 +     3248 agtgtcccaggacatgagaacaacaaggactcccggctgctctggatgggagccagcgattgcctcatctccgtggggttcagccag
+
+a score=5254.000000
+s LMAW01000001.1 10043794 83 + 10443977 atgcgggagcgggaggtgaagctgtgggacatgcggcgattcagcggggcaatgctctccatggcgctggacacctcgcccgg
+s NM_001006176       1048 83 +     3248 atgcgtgagcgggaggtgaagctctgggacacgcggaaattcagtggcgcgactttcaccttggcactggacacctcatctgg
+
+a score=2458.000000
+s LMAW01000001.1 10059668 55 + 10443977 ggcggccatcccactgtacgatgccgacacnnnnnnnnnnnnnnnnnnnnngaag
+s NM_001006176       1131 55 +     3248 ggccgtgatcccactgtatgacgccgacacggggctgctggtgctggcggggaag
+
+a score=4411.000000
+s LMAW01000001.1 10059824 56 + 10443977 ggagaaaacctcctgtactgcttcgaggtggcacccgcacagccggcactcaccca
+s NM_001006176       1186 56 +     3248 ggagaaaacctcctgtactgcttggaggcggcaccggctcagcctgcactcaccca
+
+a score=11117.000000
+s LMAW01000001.1 10059973 148 + 10443977 agtgacccagtgccggacagagggcagcacgcggggcctggccactgtgccacgcctggccctggacgtcatggcctgcgaggtgctccgtgtcctgcagctcaccgacaccgccctngtccctgtcagctacgtggtgccacgcaag
+s NM_001006176       1242 148 +     3248 agtcactcagtgcctgatggagggacccacacggggcctggccaccgtcccccgcctggccctggacgtcatggcctgcgaggtgctccgcgtcctgcagctcaccgacaccttcctcgtccctgtcagctacatcgtgccccgcaag
+
+a score=7272.000000
+s LMAW01000001.1 10060798 96 + 10443977 tctgtccaagacttccatgaggatctgttccccgactgcaccgggacgctgccagccaccggcgcccaggcctggtgggcaggggacagccagcag
+s NM_001006176       1390 96 +     3248 tccaaccaggagttccacgaggatctgttccctgactgcgctgggatgctgccggccacagatgcccaggcctggtgggcaggggacagccagcag
+
+a score=4393.000000
+s LMAW01000001.1 10060979 63 + 10443977 gtggggagggtnagcctgcacccagcaaggagacccacggagaccttcacctcgccagtcatt
+s NM_001006176       1486 63 +     3248 gtggggagggtgagcctgcacccggcacggagacccacagagaccttctgttccccactcatc
+
+a score=1852.000000
+s LMAW01000001.1 10061265 24 + 10443977 ggcagtggctactcctcaccatcc
+s NM_001006176       1609 24 +     3248 ggcagtggctactcttcaccctct
+
+a score=13034.000000
+s LMAW01000001.1 10061487 177 + 10443977 gggcccagctcccgcttccggcacgcacagggcagggtgctgcaccgcgacacgcacttcacaaacctgcgggggctcagcctcaccacgccgggcgagtgtgacggcttctgcgccaaccaccagttcgtcgccttgcccctgctctccgctggtggccagatcgccatcctcgag
+s NM_001006176       1741 177 +     3248 gggcccagctcccgcttccggcacacacagggcacagtgctgcaccgtgacagccacataaccaacctgcgggggctgagcctcaccacgccgggcgagagcgacggcttctgtgccaaccaccagcgtgttgccctcccactgctctctgccggtggccagatcgctgtccttgag
+
+a score=7402.000000
+s LMAW01000001.1 10061740 107 + 10443977 ctctccaagcccggccgtctccctgacgcagccatacccaccatccagaacagcgtggctgtgactgacctgttctgggaccccttcgacccacagcgcctcgctgt
+s NM_001006176       1918 107 +     3248 ctctccaaaccaggccgtctccccgacgtggctgtgcccaccatccagaatggtgcagcggtgtccgacctctcctgggaccccttcgacccacagcgccttgcggt
+
+a score=5654.000000
+s LMAW01000001.1 10061947 83 + 10443977 agctggtgaagatgccaagatccggctgtggcgaatcccggagggagggctgcaggagacactgcaggagcctgaagctgtcc
+s NM_001006176       2025 83 +     3248 tgcgggggaggatgccaagatccggctgtggcgggtgcctgagggggggctgcaggacacgctgcaggagcctgaggccgtgc
+
+a score=10613.000000
+s LMAW01000001.1 10062143 145 + 10443977 taccaggtcacacggagaagatctactccatccgcttccaccccgtggcatccgatctcctggtttcttcctcctatgacatgacagtgcggatctgggagctgagcactgggcgggaagccttgtgcctgcagggacacactga
+s NM_001006176       2108 145 +     3248 tgagagggcacacggagaagatctactccatccgcttccaccccgtggcagccgacctccttgtctcctcttcctatgacatgacagtgcggatttgggatctgggtgctgggcgggaggtgctgtgcctacagggacacacgga
+
+a score=8118.000000
+s LMAW01000001.1 10062365 109 + 10443977 ccagatcttcagcctggcttggagcccggatgggaagaagctggcaacagtgagcaaagatggtcggttacggctctatgagccacggcgcagccctctgcctcaacag
+s NM_001006176       2253 109 +     3248 ccagatcttcagcctggcctggagcccagacgggaggaagctggcgacggtgagcaaggatggccggttgcggctctttgagcctcggtgcagccttcaaccccagcag
+
+a score=5299.000000
+s LMAW01000001.1 10062584 83 + 10443977 gagggtccaggtcccgagggggcccgcggagcacgcctcgtntgggtttgtggtggcgactacctcctggtgtccggctttga
+s NM_001006176       2362 83 +     3248 gagggtccgggccctgagggaggccgtggggcacgcgtggtctgggtgtgcggaggtgacttcctcctcgtgtccggcttcga
+
+a score=11061.000000
+s LMAW01000001.1 10062743 145 + 10443977 cagccgcagcgagaggaggatcctcctgtaccaggctcaggctctgcccaagggacccttgtctgtccttggccttgatgtggccccttccaccctcctgcccttctatgatgaggataccagcgttgtcttcctcactggcaag
+s NM_001006176       2445 145 +     3248 cagccgcagcgagaggaggatccttctgtaccgtgcacaggccctgtccgatgggcccctctacgttctcggcctcgatgtggccccttccacactcctgcccttctatgatgaggacaccagtgttgtcttcctcactggcaag
+
+a score=7338.000000
+s LMAW01000001.1 10063001 90 + 10443977 ggtgacaccagggtcttcctctatgaggtgacgcctgagccaccctatttccttgagtgcaacagcttcacctctggcgaaccccacaag
+s NM_001006176       2590 90 +     3248 ggtgacaccagagtcttcctctacgaggtgacccccgagccaccctatttcctcgaatgcaacagcttcacctccagcgacccccacaag
+
+a score=8651.000000
+s LMAW01000001.1 10063188 117 + 10443977 ggctttatcttcctgcccaaaacggtgtgtgaggtccgggaggtggagttcgcccgggcgctgcgcctcgggcagagcaccctcgagcctgtggctttccatgtgccacgcatcaag
+s NM_001006176       2680 117 +     3248 ggctttgtcttcctgcgcaagacagcgtgcgacgtgcgggaggtggagttcgcccgggcgctgcggctggggcagagcagcctcgagccggtggctttccgtgtgccgcgtgtcaag
+
+a score=7329.000000
+s LMAW01000001.1 10063383 129 + 10443977 aaggagtatttccaggacgacatctacccgccaacccgtgtctggtgggagccggccctcagcggcaccgcctggctgtcgggggaggatgggcagcagcgccnnnnnnnnnnnnnnnnnncagacatg
+s NM_001006176       2797 129 +     3248 aaagagtatttccaagaagacatcttccctcccacccgcgtgtggtgggagccggccctgagcgccagcgcctggctggggggggcggacgggcagcagaaccgcgctgagctccgtcccgccgacatg
+
+a score=5227.000000
+s LMAW01000001.1 10063616 68 + 10443977 ctcccagtgagccaggccccgaaagaggccccagcgcggaagttcgtccctgcggccgtgtacctgga
+s NM_001006176       2926 68 +     3248 gtgccagtgagccaggccccaaaggaggcacctgcgcggaagttcgtccctgcggccgtgtatctggg
+
+a score=5944.000000
+s LMAW01000001.1 10063806 93 + 10443977 gccatggtggcccggctgggcaaccgggaagacccgctgccgcaggactccttcgagggggtggacgaggacgagtgggtaagtgctgggggg
+s NM_001006176       3034 93 +     3248 gccatggtggcccggctggggaaccgccacgacccgctgccgcaggactccttcgaaggcgtggatgaggccgagtgggactaggccgcgggc
+
+a score=2061.000000
+s LMAW01000001.1 10064114 27 + 10443977 ggccccgctattaaagccgctacngca
+s NM_001006176       3203 27 +     3248 ggccccgccattaaagccgctgcagcc
+
+a score=1889.000000
+s LMAW01000002.1 3610886 33 + 5883884 gcggagttggagtttgtacagataatcataatc
+s NM_001031013        69 33 +     971 gctgaactggagtttgttcaaatcatcattatc
+
+a score=3646.000000
+s LMAW01000002.1 3610955 66 + 5883884 tgtctgctgaaccactacaaactctctgcgcgatccttcatcagccggcacagccaggggaggcgg
+s NM_001031013       138 66 +     971 tgcttgttgaaccattacaaactatcgacgcgctcctttatcaaccggcagagccaaagcagaaga
+
+a score=1683.000000
+s LMAW01000002.1 3617941 21 + 5883884 gcctgtggccttcggaaagca
+s NM_001031013       232 21 +     971 gcttgtggccttcggaaagct
+
+a score=24133.000000
+s LMAW01000002.1 3618099 414 + 5883884 tacaccccgagacccagtgaccgcctggcagtgccatccttcctgcagagggaccgctttaaccgattccagccaacctacccctacatgcagcacgagatcgatctgcctcccaccatctcgctgtcggacggcgaagagccccccccgtaccagggaccctgcacgctgcagctgcgggaccccgagcagcaaatggagctcaacagagagtcggtccgggctccccccaacagaaccatctttgacagtgacttgatagataactccgtgtac---ggggggccgtgcccccccagcagtaactctggcatcagcgcgacctgctatgggagcaatggtaggatggagggaccaccaccgacgtacagcgaggtgatagggcactacccagggtcgacgttttaccagcaccag
+s NM_001031013       285 417 +     971 tatgctccaaggtccagggacaggtttaccgccccatcttttatgcagcgggaccgtttcagtcgcttccagcccacttacccatacatgcagcatgagattgaccttcctccaaccatttccctctcagatggggaagagccgccgccataccaaggcccgtgcaccctgcagctccgggacccagagcagcagatggagctcaaccgggaatctgtcagggcaccgcccaaccgaaccatttttgatagcgacttgatagacatttccatgtacaatgggggcccctgcccaccgagcagcaattcgggcataagtgcaaccaactatagcagtaatggaaggatggaaggaccacccccgacgtacagcgaggtcatggggcactacccaggctcctcgtttttccatcaccag
+
+a score=5076.000000
+s LMAW01000001.1 9729332 108 + 10443977 gatgacatccagaagatgaaccctccaaagttctccaaagtggaggacatggcagagctgacttgcctcaatgaagcttcagtgctgcacaatctaagggagagatac
+s NM_204766          262 108 +     5992 gatgacgtgcagtcaatgaaccctcccaaattcgacatgattgaggacatggctatgctgacccatctgaatgaggcatctgtgttgtacaacctgaggaagcgctac
+
+a score=4719.000000
+s LMAW01000001.1 9734141 153 + 10443977 acttattcaggtctcttctgcgtcgtgataaatccatacaaacagctgcccatttactcagagaagatcatcgacatgtacaagggaaagaagaggcacgagatgccnccccacatctatgctatcgcggacacagcctacaggagcatgctg
+s NM_204766          388 153 +     5992 acctactcgggcttgttctgcgtgactataaacccctacaagtggctgcctgtctacaagtcggaggttgttgctgcctacaaaggcaagaggcgctcagaagcccctcctcacatcttctccattgctgataacgcataccacgacatgctg
+
+a score=2557.000000
+s LMAW01000001.1 9751019 66 + 10443977 ggtgaatctggtgctggcaagnnnnnnnnnnnnnnnnnngtgattcagtacctggctgttgttgct
+s NM_204766          574 66 +     5992 ggagaatccggtgctggcaagactgtcaacacaaaaagggtcatccagtactttgccacagtggca
+
+a score=4528.000000
+s LMAW01000001.1 9755220 93 + 10443977 ggagagctggaaaaacagcttctacaggcaaaccctattcttgaagcttttggaaatgccaaaacagtgaagaatgacaactcctccagattt
+s NM_204766          688 93 +     5992 ggaaccttggaagatcaaatcattcaagcaaacccagccctagaagcttttggaaacgccaaaaccctgagaaatgacaactcctcacgtttt
+
+a score=2340.000000
+s LMAW01000001.1 9762042 39 + 10443977 ttcttggggatccttgacattgctggatttgagattttt
+s NM_204766         1414 39 +     5992 ttcattggagtcctggacattgctggctttgaaatcttt
+
+a score=8490.000000
+s LMAW01000001.1 9762555 171 + 10443977 aattcctttgagcagctgtgcatcaattacactaatgagnnnnnnnnnnnnnnnnnnnnncacacaatgtttatactggagcaagaggaataccaacgagagggcattgaatggaatttcattgactttggccttgacctgcaaccttgcattgagctgattgaaagacca
+s NM_204766         1459 171 +     5992 aacagctttgagcaactctgcatcaattacactaatgagaaactgcaacagtttttcaatcatcacatgtttgtcctcgagcaagaagaatataaaaaagaaggcattgaatgggtatttattgattttggcatggacctgcaggcctgtattgatctaattgagaagcca
+
+a score=2620.000000
+s LMAW01000001.1 9764665 99 + 10443977 ttccgtactgttggacaactctacaaagagcagctgactaaactaatgaccaccttgaggaataccaatcccaactttgtccgctgtatcatcccaaat
+s NM_204766         1981 99 +     5992 tttcagacagtgtcctcattacacaaggaaaatttaaataaactaatgactaacctaagatctacagcccctcactttgtacgatgcattattcccaac
+
+a score=4139.000000
+s LMAW01000001.1 9765048 84 + 10443977 gatgcccatttagtactggagcagttgcgntgcaatggtgtcttggaaggtattcgtatctgccgncagggatttcccaacagg
+s NM_204766         2104 84 +     5992 gatgctttccttgtcttgcatcagctccgctgtaatggtgtcctggaaggcatccgcatttgccgtaagggtttcccaaacaga
+
+a score=2891.000000
+s LMAW01000002.1 103604 51 + 5883884 atgctggacatgagccagtttggggaggctgctgagtacctccggaagagc
+s NM_204766          49 51 +    5992 atgatggacatgacggaatttggggaggctgctcccttcctccgaaagagc
+
+a score=4032.000000
+s LMAW01000002.1 104407 78 + 5883884 tggataccggatgagaaagaagcttatatagaagtggaaatcaaagacagcactggtggcaaagtcactgtggaaacc
+s NM_204766         154 78 +    5992 tgggttcctgatgacaagaaagcttacgttgaagctgaaattacagaaagcagtggtggcaaagtgactgttgagaca
+
+a score=8256.000000
+s LMAW01000002.1 107764 132 + 5883884 aaggaggatgagctgcagcccatgaacccacccaagttcgacatgattgaggacatggccatgctgacgcacctcaacgaggcctctgtgctctacaacctgaagcgccgctactcccactggatgatctac
+s NM_204766         256 132 +    5992 aaagaagatgacgtgcagtcaatgaaccctcccaaattcgacatgattgaggacatggctatgctgacccatctgaatgaggcatctgtgttgtacaacctgaggaagcgctacagcaactggatgatttat
+
+a score=291.000000
+s LMAW01000002.1 107909 3 + 5883884 acc
+s NM_204766         388 3 +    5992 acc
+
+a score=8788.000000
+s LMAW01000002.1 108002 152 + 5883884 tactcagggctcttctgtgtcaccatcaacccctacaagtggctgcccgtctacacggcgcctgtggtggcagcctacaagggcaagcggcgcaccgaggctcccccgcacatctactccatcgccgacaatgcctacaatgacatgctgcg
+s NM_204766         391 152 +    5992 tactcgggcttgttctgcgtgactataaacccctacaagtggctgcctgtctacaagtcggaggttgttgctgcctacaaaggcaagaggcgctcagaagcccctcctcacatcttctccattgctgataacgcataccacgacatgctgcg
+
+a score=182.000000
+s LMAW01000002.1 108233 2 + 5883884 ta
+s NM_204766         543 2 +    5992 ta
+
+a score=1787.000000
+s LMAW01000002.1 108257 29 + 5883884 atcgtgaaaaccagtccatgctcatcacg
+s NM_204766         545 29 +    5992 atcgggaaaatcagtcaatgctaatcact
+
+a score=5232.000000
+s LMAW01000002.1 109261 75 + 5883884 ggagaatctggtgctggtaagactgtaaacaccaagcgggtcattcagtactttgccattgtcgcagccttgggc
+s NM_204766         574 75 +    5992 ggagaatccggtgctggcaagactgtcaacacaaaaagggtcatccagtactttgccacagtggcagccctgggt
+
+a score=6158.000000
+s LMAW01000002.1 112047 90 + 5883884 accctcgaagatcaaatcattgaggctaacccagctatggaagcttttggcaatgccaaaaccataaggaatgacaactcctcccgtttt
+s NM_204766         691 90 +    5992 accttggaagatcaaatcattcaagcaaacccagccctagaagcttttggaaacgccaaaaccctgagaaatgacaactcctcacgtttt
+
+a score=3179.000000
+s LMAW01000002.1 112967 70 + 5883884 ggcaagttcatccggatccattttggcccctcagggaagctggcctccgcagacattgacatctgtgagt
+s NM_204766         781 64 +    5992 ggtaaatttatccgaatccattttggaaccacaggcaagctgtcatctgctgacattgagatc------t
+
+a score=5464.000000
+s LMAW01000002.1 113148 95 + 5883884 atcttctggaaaaatcaagagtgattttccagcagcccaaagagcggagctaccacatctactaccagatcctctctgggaagaaaccagagctg
+s NM_204766         845 95 +    5992 atttactggagaaatcccgagtgatttttcagcaaccgggtgagagagactatcacatcttctaccagatcttatcaggaaagaaaccagagttg
+
+a score=5760.000000
+s LMAW01000002.1 114257 81 + 5883884 ccctatgactaccacttctgctctcagggtgtaactactgtggacaacttggatgatggcgaggaactcatggcaacagat
+s NM_204766         967 81 +    5992 ccatatgactaccacttttgctcccaaggagtagttacagtggacaacttggatgacggagaagaactgatggcaacagat
+
+a score=282.000000
+s LMAW01000002.1 114391 3 + 5883884 caa
+s NM_204766        1048 3 +    5992 caa
+
+a score=5303.000000
+s LMAW01000002.1 114866 136 + 5883884 gccatggacatcntgggcttcagcaatgatgagaaatatggctgctataaaatagtgggngctatcatgcacttcggcaacatgaagttcaagcagaagcagcgagnnnnnnnnnnnnnnnnnnacggcactgaaa
+s NM_204766        1051 136 +    5992 gccatggacattttaggatttgtgccagatgagaagtatggtgcctacaagctcacaggtgccattatgcactttgggaacatgaaattcaaacaacgacccagagaagagcaggcagaggctgatggcactgaaa
+
+a score=7426.000000
+s LMAW01000002.1 116183 119 + 5883884 gtgctgacaaagctgcctacctgatgggaatcagctcagctgacctcatcaagggcttgctccatcctcgtgtgaaggtgggcaatgagtacgtgaccaaaggtcagaacgtggagcag
+s NM_204766        1187 119 +    5992 gtgccgacaaagctgcctacctaatgggaatcaactcctctgatttggttaagggcttattacaccctagagtgaaagttggaaatgagtatgtgaccaaaggtcaaagtgttgaacag
+
+a score=8473.000000
+s LMAW01000002.1 116438 157 + 5883884 gttgtctatgcggtgggagcactggctaaagccacctatgaccgcatgttcaagtggctggtgactcggatcaataggaccctggacaccaagctggccaggcagttcttcattggagtactggacattgcaggcttcgagatctttgatgtgagtt
+s NM_204766        1306 152 +    5992 gttttgtatgctgttggggccttatccaaggcagtgtatgatcgaatgttcaagtggctggtggtccgtatcaacaaaacactggacactaagctgccaagacagttcttcattggagtcctggacattgctggctttgaaatctttgat-----tt
+
+a score=9756.000000
+s LMAW01000002.1 116908 169 + 5883884 caacagcnnnnnnnnnnnnnnnnnnnacttcaccaacnnnnnnnnnnnnnnnnnnttcaaccaccacatgtttgtcctggagcaagaagaatataagaaggaaggcatcgaatgggtcttcattgactttggcctggacctgcaggcttgcattgacctgatcgagaag
+s NM_204766        1458 169 +    5992 caacagctttgagcaactctgcatcaattacactaatgagaaactgcaacagtttttcaatcatcacatgtttgtcctcgagcaagaagaatataaaaaagaaggcattgaatgggtatttattgattttggcatggacctgcaggcctgtattgatctaattgagaag
+
+a score=11142.000000
+s LMAW01000002.1 117767 180 + 5883884 ccattgggaatcctgtccatccttgaagaggagtgcatgttcccaaaagcctccgacatgtccttcaaagctaagctctatgacaaccaccttgggaagtcgcccaacttccagaagccccggccagataaaaagaagaagtatgaggcgcactttgagctggtgcactacgctggtgtg
+s NM_204766        1627 180 +    5992 ccactaggaatcctgtctatccttgaagaagaatgtatgttcccaaaagctacagatatgacgttcaaagccaaactttacgacaaccatcttggcaagtcacctaacttgcagaagcccaggcctgataagaaaaggaaatatgaagctcactttgaacttattcattatgctggctca
+
+a score=6654.000000
+s LMAW01000002.1 118030 123 + 5883884 gtgccntacaacatcattgggtggctggacaagaacaaggacccgctgaacgagacagtagtgtctgtcttccaaaagtcccaaaacaagctcctggcttccctctatgagaactacgtgggc
+s NM_204766        1807 123 +    5992 gttccctataacatcattgggtggcttgagaagaacaaagacccacttaatgaaactgtagtaggtattttccaaaagtcgtccaacaagctcctggcaagcctgtttgaaagctacgttggt
+
+a score=2639.000000
+s LMAW01000002.1 118682 48 + 5883884 aaacgtaaaaaggcagcttctttccaaacagtgtctcagctgcacaag
+s NM_204766        1960 48 +    5992 aaacgcaagaaaggtgcttcttttcagacagtgtcctcattacacaag
+
+a score=4326.000000
+s LMAW01000002.1 120119 90 + 5883884 gagaacctcaacaagctgatgaccaacctgcgctccactcagccccactttgtccgctgcatcatccccaacgagacaaagaccccgggt
+s NM_204766        2008 90 +    5992 gaaaatttaaataaactaatgactaacctaagatctacagcccctcactttgtacgatgcattattcccaacgaatcaaaaacaccaggt
+
+a score=6285.000000
+s LMAW01000002.1 120672 117 + 5883884 gccatggatgccttccnnnnnnnnnnnnnnnnnnnctgtaacggtgtccttgaaggcatccgcatctgccgtaaagggttccccaacaggatcctctacgcagacttcaagcagcgg
+s NM_204766        2098 117 +    5992 gaaatggatgctttccttgtcttgcatcagctccgctgtaatggtgtcctggaaggcatccgcatttgccgtaagggtttcccaaacagagtgctttatgctgactttaaacaaagg
+
+a score=4947.000000
+s LMAW01000002.1 121329 123 + 5883884 taccgtatcctgaatccaacagccattccagatgacaagtttgtggacagcagaaagnnnnnnnnnnnnnnnnnnnnnnccctggaactggaccactcncagtacaagttcggtcacaccaag
+s NM_204766        2215 123 +    5992 taccgcattctgaacccaggtgcaatcccagaggacaagtttgtggatagcagaaaagctgccgaaaaactactggcatctttagatattgaccataaccaatatcgtttcgggcatactaag
+
+a score=5873.000000
+s LMAW01000002.1 122185 134 + 5883884 gtgtttttcaaggctggtttgctgggcttgctggaggagatgcgggatgagcgtctggccaagatcctgaccatgctgcaggccagaatccgtgggcacctcatgcgcatcgagtatcagaagatcatcagcag
+s NM_204766        2338 134 +    5992 gtgttcttcaaggctggtctgttgggccacctagaagaaatgagggatgagagacttgcaaagatcctaacaatgatccaggcaagggcacgtggcagactgatgaggatcgagttccagaagatagtggagcg
+
+a score=13053.000000
+s LMAW01000002.1 122724 241 + 5883884 cagggaagccctctataccatccagtggaacatccgggccttcaatgctgtcaagaactggtcctggatgaagctgttcttcaagatcaagcctctgctcaagtctgctcagactgagaaggaaatgtccaacctgaaggaggagctccagaagctgaaggaggctctggaaaagtctgaggctaagaggaagnnnnnnnnnnnnnnnnnnntctccatgatccaggagaagaacgacctg
+s NM_204766        2472 241 +    5992 cagggatgcccttcttgtaattcagtggaatatccgtgcctttatggctgtgaagaattggccctggatgaagcttttctttaagatcaaacctcttctgaagtctgcagaaactgaaaaagagatggccaatatgaaggaagagttcttgaaattgaaggaggccctggaaaaatctgaagcaaggagaaaggaacttgaagagaaacaagtctctttagttcaggaaaaaaatgatttg
+
+a score=13344.000000
+s LMAW01000002.1 123518 261 + 5883884 ctcctgtgcctgtcccaggagcaagacaacctggcagatgcagaggagcgctgtgacctgctgatcaagtccaagatccagctggaggccaaggtgaaggagctgacagagcgcnnnnnnnnnnnnnnnnnnnnnaactcggaactcaccgccaagaagcgcaagctggaggatgagtgcgcagagctgaagaaggacattgatgatctggagatcacgctggccaaggtggagaaggagaagcatgccacagagaacaag
+s NM_204766        2713 261 +    5992 ctattgcagctccaagctgagcaagacactctggcagatgctgaggagcgatgcgacttgttgattaaatccaagattcagctggaggccaaagtcaaagagctgacagagcgagttgaggatgaggaagagatgaattctgagctgacatccaaaaagagaaaattggaagatgaatgctctgagctcaagaaagatattgatgatcttgaaataacacttgcaaaagtagagaaagagaagcatgctactgaaaataag
+
+a score=10407.000000
+s LMAW01000002.1 123945 177 + 5883884 gtgaaaaacctgattgaagagatggctgctctggatgagatcattgccaagctgacnnnnnnnnnnnnnnnnnnncaagaggcccatcagcaggccctggatgacctgcaggctgaggaagacaaagtcaacacactgacaaaagccaaggtcaaactggagcagcaagtggatgat
+s NM_204766        2974 177 +    5992 gtgaaaaatctgacagaagaaatggcgactcttgatgagaacatcagcaaacttactaaggagaagaagtccttgcaggaagctcatcagcaagttctggatgaccttcaagcagaggaagacaaggtcaacacactgagcaaagctaaagtgaaactggaacagcaagtggatgat
+
+a score=6197.000000
+s LMAW01000002.1 124449 146 + 5883884 ctggaaagctctcttgaacaagagaagaaagtccgcatggaccnnnnnnnnnnnnnnnnnnnnnnnnaaggagacctgaagttgacccaagagtctgtaatggatctggagaatgannnnnnnnnnnnnnnnnnnnnnntcaagaa
+s NM_204766        3151 146 +    5992 cttgagggctcgcttgagcaagagaagaaagtgaggatggatctagaaagagcaaaacgcaaactggaaggagatttgaagctgacccaagagagtgtcatggacttggagaatgataagttgcaaatggaagaaaagctgaaaaa
+
+a score=5494.000000
+s LMAW01000002.1 124904 90 + 5883884 aaagactttgaaatgagtcagctgaattcaaggattgaagatgggcaagtgactgaggcccagctgcagaagaagatgaaggaactccag
+s NM_204766        3298 90 +    5992 aaagagtttgaaatgagccaattgaattccaagatagaagatgaacaagctattgtaatgcagctgcagaagaagataaaggaactacag
+
+a score=2368.000000
+s LMAW01000002.1 125793 72 + 5883884 gcccgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcgcgctgccagagccaangtggagaagcagcgg
+s NM_204766        3388 72 +    5992 gctcgtatagaagagctggaagaggagctggaagcagaaagagctgctcgagccaaggtggaaaagcagaga
+
+a score=16465.000000
+s LMAW01000002.1 125898 267 + 5883884 gagcggctggaggaggccggcggcgccacggccacgcagctggagatgaacaagaagcgggaagcggagttcctgaagctgcggcgggacctggaggaggcgacgctgcagcacgaatccacggccgctgccctgcgcaagaagcacgcggacagcgtggccgagctgggcgagcagatcgacaacctgcagcgcgtcnnnnnnnnnnnnnnnnnnnnnnnnnnngagttgaagatggaggtggatgacctgtcatccaacatcgag
+s NM_204766        3493 267 +    5992 gagcggcttgaagaggctgggggtgccactgctgcccagctggagatgaacaagaaacgtgaagctgagttcctgaagctggcgcgtgacctcgaggaggccacgctgcactatgaagccacagctgctgctctgaggaagaagcatgcggacagcgtggctgagatgggggagcagctggacaacctgcagcgcgtcaagcagaaactggaaaaggagaaaagcgagctgaaaatggaagtggatgatctgacatccaacatggag
+
+a score=4362.000000
+s LMAW01000002.1 126790 129 + 5883884 gccaacgctgagaagctgtgtcgcacctatgaggaccagctcaacgaggccaagtccaaagtggacgagctgcagcgacagctgaacgacgtgagcacacagcggggcaggctgcagaccgagaacggt
+s NM_204766        3778 129 +    5992 gcaaatgcagaaaaactttgtcgcacttatgaagatcatcttaatgagacaaaaactaaactggatgaaatgactcgcctcatgaatgacctcactactcaaaagacaaaactccagagtgagaatggt
+
+a score=4296.000000
+s LMAW01000002.1 127405 81 + 5883884 atcaaccagctgagccgtggcaagacctcnttcacacagaacattgaggaactcaagaggcagctggatgaagagaccaag
+s NM_204766        3943 81 +    5992 ataagtcagctgtcccgaggaaaaacatcatttacacagcagattgaagaacttaggagacagctagaagaggaaaccaag
+
+a score=191.000000
+s LMAW01000002.1 127543 2 + 5883884 tc
+s NM_204766        4024 2 +    5992 tc
+
+a score=10394.000000
+s LMAW01000002.1 127717 196 + 5883884 caagaacgccctggcccatgccctgcaagcctcccggcacgactgcgacctcctgcgggagcagtacgaggaggaggtggangccaagagcgagctccagaggaacttgtccaaggccaatgcagaagtggcccagtggagaaccaagtacgagacggacgccatccaacggannnnnnnnnnnnnnnnnnnnaag
+s NM_204766        4026 196 +    5992 caaaaatgctctggctcatgccctgcaagcagccaggcatgactgtgatctcttgcgagaacagtacgaggaggagcaagaagccaaggcagagctgcagcgggctctctccaagggaaatgcagaagtggcacaatggagaacaaagtatgaaactgatgccattcagaggactgaggaactggaagatgccaaa
+
+a score=18874.000000
+s LMAW01000002.1 128055 348 + 5883884 aagaagctggccacccggctgcaggaggcggaggaggcggtggaggcngcccatgccaagtgctcctcgctggagaagaccaagcatcggctgcagacagagatcgaggacctctcggtggacctggaacgcgccaacnnnnnnnnnnnnnnnnnngacaagaagcagcgcaactttgacaggatcctggccgagtggaagcagaagtacgaggagacccaggcggagctggaggcgtcgcagaaggagtcgcgcagcctgagcacggagctcttcaagctcaagaacgcctacgaggagtccctggacaacctggagaccctcaagagggagaacaagaacctgcag
+s NM_204766        4222 348 +    5992 aaaaagcttgctgcccgcctgcaagaagctgaggaagcaattgaagctgccaacgccaagtgctcttctctggaaaagacaaagcacaggctgcagaacgagctggaagatatgatgattgatctggaaaaggccaactcagcggctgcctccctggacaagaagcagcgtggctttgacaagatcatcaatgactggaagcagaagtatgaagagtcacaggctgagctggaagcttcccagaaggaggcccgcagcctcagcaccgagctcttcaagctgaagaatgcctatgaagagacactggaccatctggagactctgaaacgggaaaacaagaacctccaa
+
+a score=5811.000000
+s LMAW01000002.1 129238 116 + 5883884 ggggccctggagcacgaggagagcaagactctgcgcatccagctggagctgaaccagatcaaggctgatgtggacaggaagctggcggagaaggacgaggagtttgagaacctgag
+s NM_204766        4696 116 +    5992 ggagctttggagcatgaagaaagcaagacccttcgttttcagcttgagctttctcagcttaaagctgattttgaaaggaagctggcagaaaaggatgaagaaatggaaaatataag
+
+a score=8840.000000
+s LMAW01000002.1 129442 193 + 5883884 gcgcaaccaccagcgcnccatggactccatgcaggccacgctggatgcagaggcgcgggccaagaacgaggcggtgcggctgaggaagaagatggagggagacctgaacgagatggagatccagctgagccacgccaaccgccaggccgccgagttccagaagctggtccggcagctccaggcccagatcaag
+s NM_204766        4812 193 +    5992 gaggaaccaacaacgcaccatagattctctgcagtccacccttgattctgaagcccggagcagaaatgaggccatccggctgaagaagaagatggaaggagacctcaacgagatggaaatccagctcagccatgctaacaggcatgctgcagaagcaaccaagtcagcacgtggcctgcagacacaaatcaag
+
+a score=4511.000000
+s LMAW01000002.1 129761 106 + 5883884 tgaaggagcaggcggccgccctggagcgccgcaacaacctgctgctggccgaggtggaggagctgcgggcggcgctggagcaggcggagcggagcaggaagctggc
+s NM_204766        5051 106 +    5992 tgaaggagcagctggcagtctctgacaggaggaacaaccttctccagtcagagctggatgagctgagggctttgctggaccagactgaacgggcgaggaagctggc
+
+a score=6880.000000
+s LMAW01000002.1 130020 123 + 5883884 acgggcctgatcaaccagaagaagaagctggaagcagacatctcgcagctgagcagcgaggtggaggacgcagtgcaggagtgccgcaacgctgaggacaaggcaaagaaggccatcacagat
+s NM_204766        5212 123 +    5992 acaagcctgatcaatcagaagaagaaactggagggtgacatatcccagatgcagaatgaagtggaggaatcaatccaggagtgccggaacgcagaggaaaaagccaaaaaagcgatcacagat
+
+a score=9597.000000
+s LMAW01000002.1 130254 177 + 5883884 gctgccatgnnnnnnnnnnnnnnnnnnnaggagcaggacacaagcgcacatctggagcggatgaagaagaacatggagcagaccatcaaggacctgcagatgcgcctggatgaagcggagcagattgctctcaaggggggcaagaagcagatccagaagctggaggccagggtgaga
+s NM_204766        5335 177 +    5992 gcagcaatgatggctgaggagcttaaaaaggagcaagatactagtgctcacttggagagaatgaagaagaacatggaacaaaccattaaagatctgcagaaacgactggatgaagcagaacaaatagccctgaaaggtggcaagaaacagatccagaaactggaatccagggttcgt
+
+a score=4656.000000
+s LMAW01000002.1 131103 99 + 5883884 caggctgaggaagaccggaagaacctggcacggatgcaggacctcattgacaagctgcagagcaaggtcaagagctacaagcgccagttcgaggaggcg
+s NM_204766        5608 99 +    5992 cagtcagaagaagataagaaaaatctggcccgaatgcaggatctgatagataagctacaactaaaagtgaagagctacaaacaccaagcagaggaagcc
+
+a score=3832.000000
+s LMAW01000002.1 131337 87 + 5883884 ctggtgaagtaccgcaaggtgcagcacgagctggatgatgccgaggagcgggcggacatngccgagacgcaggtcaacaagctgcgc
+s NM_204766        5728 87 +    5992 ctttcgaagtacagaaaacagcaacatgatctggacgatgctgaagaaagggcagaaatagctgaatctcaagttaacaagctgagg
+
+a score=1481.000000
+s LMAW01000003.1 259524 27 + 4188689 ggggaaagtggtgctggaaagactgta
+s NM_204766         574 27 +    5992 ggagaatccggtgctggcaagactgtc
+
+a score=2239.000000
+s LMAW01000003.1 261255 80 + 4188689 gatattattctacagtccaaccctttactggaggcttttgggaatgcaaaaactgtacggaacaacaactccagcagatt
+s NM_204766         700 80 +    5992 gatcaaatcattcaagcaaacccagccctagaagcttttggaaacgccaaaaccctgagaaatgacaactcctcacgttt
+
+a score=814.000000
+s LMAW01000003.1 261529 11 + 4188689 tggtcaattta
+s NM_204766         780 11 +    5992 tggtaaattta
+
+a score=1806.000000
+s LMAW01000003.1 262379 66 + 4188689 ctactggaaaagtctcgagttgtaatgaggaatcccggagagagnnnnnnnnnnnnnnnnnnncag
+s NM_204766         847 66 +    5992 ttactggagaaatcccgagtgatttttcagcaaccgggtgagagagactatcacatcttctaccag
+
+a score=2219.000000
+s LMAW01000003.1 268797 36 + 4188689 attggtgtccttgacatttatggctttgaaatattc
+s NM_204766        1417 36 +    5992 attggagtcctggacattgctggctttgaaatcttt
+
+a score=3848.000000
+s LMAW01000003.1 2559457 84 + 4188689 aatcagtcaatcattgtcagtggggaatctggggctggaaagactgtctctgctaagtatgccatgaggtactttgccacagtc
+s NM_204766          553 84 +    5992 aatcagtcaatgctaatcactggagaatccggtgctggcaagactgtcaacacaaaaagggtcatccagtactttgccacagtg
+
+a score=2922.000000
+s LMAW01000003.1 2563244 66 + 4188689 ggaaatgccaaaactacgaggaatgacaacagcagtcgttttgggaaatacattgaaattggtttt
+s NM_204766          739 66 +    5992 ggaaacgccaaaaccctgagaaatgacaactcctcacgttttggtaaatttatccgaatccatttt
+
+a score=1645.000000
+s LMAW01000003.1 2563349 33 + 4188689 tacctcttggaaaaatcaagagtggtgtttcag
+s NM_204766          844 33 +    5992 tatttactggagaaatcccgagtgatttttcag
+
+a score=1228.000000
+s LMAW01000003.1 2570767 13 + 4188689 tcaacagctttga
+s NM_204766         1457 13 +    5992 tcaacagctttga
+
+a score=2345.000000
+s LMAW01000003.1 2573327 66 + 4188689 catgtctttaagctagaacaagaagaatatatgaaggaacaaataccatggaccttgattgatttc
+s NM_204766         1522 66 +    5992 cacatgtttgtcctcgagcaagaagaatataaaaaagaaggcattgaatgggtatttattgatttt
+
+a score=9370.000000
+s LMAW01000001.1 9828212 119 - 10443977 cggttcgcccgcaaaggcgccctgcggcagaagaacgtgcacgaggtgaagaaccacaagttcacggcgcggttcttcaagcagcccaccttctgcagccactgcaccgacttcatttg
+s NM_001012804       121 119 +     4592 cgctttgctcgcaaaggggccctgaggcagaagaacgtgcacgaggtgaaggagcacaaattcatcgcgcgcttcttcaagcagcccaccttctgcagccactgcaccgacttcatctg
+
+a score=1915.000000
+s LMAW01000001.1 9828431 32 - 10443977 gggcttcggcaagcagggtttccagtgccaag
+s NM_001012804       240 32 +     4592 gggatttgggaaacaaggatttcagtgccaag
+
+a score=4890.000000
+s LMAW01000001.1 9869264 74 - 10443977 tttgctgcttcgttgtgcacaagcggtgccatgagttcgtcaccttctcctgccccggtgctgataaaggccct
+s NM_001012804       272 74 +     4592 tttgctgttttgtggttcataagagatgccatgagttcgttaccttctcctgtcctggagctgacaagggacct
+
+a score=7050.000000
+s LMAW01000001.1 9881475 112 - 10443977 gatccccggagcaaacacaagtttaaaatccacacgtactccagccccactttctgcgaccactgcgggtcattgctctacgggctcattcaccaggggatgaaatgtgaca
+s NM_001012804       355 112 +     4592 gaccccaggagcaagcacaaatttaagatccacacctatgggagcccaaccttctgtgaccactgtgggtcccttctttatgggctcctacaccaagggatgaaatgtgaca
+
+a score=191.000000
+s LMAW01000001.1 9881600 2 - 10443977 ct
+s NM_001012804       467 2 +     4592 ct
+
+a score=3890.000000
+s LMAW01000001.1 9882641 87 - 10443977 tgtatgatgaacgtgcacaagcgctgcgtgatgaacgtccccagcctgtgcgggacggaccacaccgagcgccgcggccgcatctac
+s NM_001012804       469 87 +     4592 tgtgatatgaatgtgcataagcaatgtgtgataaacgtcccgagcctctgtggcatggatcacactgagaaaaggggaaggatttat
+
+a score=6440.000000
+s LMAW01000001.1 9893172 150 - 10443977 agagatgctaaaaacctagttcctatggaccctaatggcttgtcagacccctacgtgaagcttaaactaatccctgaccccaaaaannnnnnnnnnnnnnnnnnnaaaactatcaagtgctccctgaatcctgagtggaacgagacattt
+s NM_001012804       598 150 +     4592 cgagaagcaaaaaacctaattcccatggatccaaatgggctttcagatccttatgttaaactgaaacttatcccagatcccaagaatgaaagtaaacaaaaaacaaaaaccttccgttctaccctgaatccacactggaatgagtcattc
+
+a score=5859.000000
+s LMAW01000001.1 9893708 114 - 10443977 ctgaaagaggcggacaaagacaggcggttgtctgtggagatttgggactgggatctgaccagcaggaatgatttcatgggctccttgtcctttgggatttcggagctgcagaag
+s NM_001012804       757 114 +     4592 ttaaaacctacagacaaagatcgacggctctctgtagaggtctgggactgggatcgaacaaccaggaatgattttatgggctctctttcatttggggtgtcagagctcatgaag
+
+a score=2349.000000
+s LMAW01000001.1 9899022 39 - 10443977 gatcggatgaaactgtcggatttcaacttcctgatggtg
+s NM_001012804      1066 39 +     4592 gacagggtgaaactgacagatttcaactttcttatggtt
+
+a score=9302.000000
+s LMAW01000001.1 9904744 171 - 10443977 gtgatgctggcggagaggaagggcacggatgagctctatgctgttaagatcttgaagaaggacgttgtaatccaggacgatgatgtagagtgcacgatggtngaaaagcgcgtcctggctctctctgggaagcctccgttcctgacccagctccactcctgctttcagacc
+s NM_001012804      1129 171 +     4592 gtgatgctggcggacaggaagaatacagaggagctctatgcaatcaaaatactgaaaaaagatgtggtgattcaggatgatgatgttgagtgtacaatggttgaaaaacgagtgctagcactgcaggataaaccaccattcctgacacagcttcactcatgtttccaaaca
+
+a score=282.000000
+s LMAW01000001.1 9904997 3 - 10443977 gtt
+s NM_001012804      1300 3 +     4592 gtt
+
+a score=6148.000000
+s LMAW01000001.1 9908755 94 - 10443977 gatcgcttgtattttgtgatggaatatgtgaatggtggggacttgatgtaccagatccagcaggttgggaggtttaaagagccncatgctgtgt
+s NM_001012804      1303 94 +     4592 gaccgcctgtattttgttatggagtatgtgaatggtggggatctcatgtaccacattcagcaagtaggaaaatttaaggagccacaagcagtgt
+
+a score=2175.000000
+s LMAW01000001.1 9909749 58 - 10443977 tctacgcagcagaaatagccatcggcctcttcttcctgcagagcaaaggcatcattta
+s NM_001012804      1397 58 +     4592 tctatgcagctgagatctcagttgggttattctttctccataatagagggattgttta
+
+a score=8515.000000
+s LMAW01000001.1 9911745 142 - 10443977 tagggacctaaagctggataacgtgatgctggatagcgaggggcacataaagatcgcagactttggcatgtgcaaagagaacatctgggatggggtgaccaccaagaccttctgcggcactccagactacattgcacctgag
+s NM_001012804      1455 142 +     4592 tagagatctgaaattggataatgtgatgttggattcagaaggacacattaaaattgctgactttggaatgtgcaaagaacatatgttagatggagtaacaaccaggaccttctgtggcaccccagattacatcgcaccggag
+
+a score=6703.000000
+s LMAW01000001.1 9915154 81 - 10443977 ataattgcttatcagccctacgggaagtctgtggattggtgggcatttggagtcctgctctatgaaatgttagctggccag
+s NM_001012804      1597 81 +     4592 atcattgcttatcagccctatgggaagtctgtggattggtgggcatatggagtgctgctctacgagatgttagctggccag
+
+a score=6328.000000
+s LMAW01000001.1 9915481 107 - 10443977 ctccctttgagggggaagatgaagacgagctcttccagtcnatcatggagcacaacgtcgcctaccccaagtccatgtccaaggaggctgtggcgatctgcaaaggg
+s NM_001012804      1679 107 +     4592 ctccatttgatggagaagatgaagatgaacttttccagtccataatggaacataatgtttcctatccaaaatcgctgtccaaagaagctgtctccatctgcaagggg
+
+a score=7584.000000
+s LMAW01000001.1 9920844 137 - 10443977 ctgatgaccaagcaccctgccaagcgcctgggatgtggcccagaaggggagcgggacatcaaggagcacgcgttcttccgctacattgactgggacaaactggagcggaaggagatccagcctcccttcaagccaaa
+s NM_001012804      1786 137 +     4592 ctaatgactaaacatcccgcaaagcgccttggctgcggcctcgaaggtgaaagagacatcagggaacacgctttcttcaggagaattgactgggagaaactggaaaacagagagatccagccacctttcaagcccaa
+
+a score=3640.000000
+s LMAW01000001.1 9926373 139 - 10443977 ntagtgcggacgcaatgctgagaacttcgaccggtttttcactcgccatccacccgtgctcacacctcccgaccaggaagtcatcaggaacattgaccagtcagaattcgnnnnnnnnnnnnnnnnnnnnnctgagttt
+s NM_001012804      1923 139 +     4592 agtgtgtggcaaaggtgctgaaaacttcgataaattcttcacgcgaggacagccggtgttgaccccgccagaccagctggtcattgctaacatagatcaatccgattttgaagggttctcctatgtcaacccccagttt
+
+a score=3751.000000
+s LMAW01000003.1 1355544 60 - 4188689 gatgaggagaggcagcagaactctgatgatgaggagagacagcagaactctgatgatgag
+s NM_001292086       619 60 +    6644 gatgaggagaagatgcagaactctgatgatgaggagaggccgcaggtgtcggacgaggag
+
+a score=2694.000000
+s LMAW01000003.1 1355538 43 - 4188689 tcagatgatgaggagaggcagcagaactctgatgatgaggaga
+s NM_001292086       562 43 +    6644 tctgatgaagatgagaggccgcagatgtctgacgatgaggaga
+
+a score=3757.000000
+s LMAW01000003.1 1355764 74 - 4188689 gggcccagcactctgatgaggagaaggtacacaactctgatggtgatgaacgggcccagcattctgatgaggag
+s NM_001292086       605 74 +    6644 ggctccagaactcggatgaggagaagatgcagaactctgatgatgaggagaggccgcaggtgtcggacgaggag
+
+a score=5882.000000
+s LMAW01000003.1 1355538 102 - 4188689 tcagatgatgaggagaggcagcagaactctgatgatgaggagagacagcagaactctgatgatgaggagaaagcacagaactctgatgaagatgaaaggccg
+s NM_001292086       508 102 +    6644 tctgatgatgaggagagacagcagaactcggacgatgaggagaaagcacagaactctgatgaagatgagaggccgcagatgtctgacgatgaggagaggctc
+
+a score=7814.000000
+s LMAW01000003.1 1355640 148 - 4188689 caggtatctgatgatgaggaaaggcttcagaactcagatnnnnnnnnnnnnnnnnnnnntgatgatgaggagaggccacaggcctcagatgaggagaagatgcagaactcagatgatgatgaaagggcccagcactctgatgaggaga
+s NM_001292086       634 148 +    6644 cagaactctgatgatgaggagaggccgcaggtgtcggacgaggagaagatgcaaaactcagatgatgatgaaagagcccagcactctgatgaggagaagatgcagaactctgacgatgacgaaagggcccagcgctccgatgaggagg
+
+a score=6015.000000
+s LMAW01000003.1 1355565 110 - 4188689 tctgatgatgaggagagacagcagaactctgatgatgaggagaaagcacagaactctgatgaagatgaaaggccgcaggtatctgatgatgaggaaaggcttcagaactc
+s NM_001292086       481 110 +    6644 tcagatgatgaggagcgacagcagaactctgatgatgaggagagacagcagaactcggacgatgaggagaaagcacagaactctgatgaagatgagaggccgcagatgtc
+
+a score=9080.000000
+s LMAW01000003.1 1355699 140 - 4188689 tgatgatgaggagaggccacaggcctcagatgaggagaagatgcagaactcagatgatgatgaaagggcccagcactctgatgaggagaaggtacacaactctgatggtgatgaacgggcccagcattctgatgaggagg
+s NM_001292086       591 140 +    6644 tgacgatgaggagaggctccagaactcggatgaggagaagatgcagaactctgatgatgaggagaggccgcaggtgtcggacgaggagaagatgcaaaactcagatgatgatgaaagagcccagcactctgatgaggaga
+
+a score=5069.000000
+s LMAW01000003.1 1353551 64 - 4188689 gcggccatggcggatatggaggatctcttcggcagcgacgcggactcggaggccgagcagaaag
+s NM_001292086        10 64 +    6644 gcagccatggccgacatggaggagctgttcggcagcgacgccgactcggaggccgagcagaaag
+
+a score=52268.000000
+s LMAW01000003.1 1355131 727 - 4188689 attccgactctggatctgaatctgattctgatcaggaaaatgctggctctggtagcaatgcttctggaagtgacagtgaccaagacgatgacagagaagcagtaaaacctagtaataaggagttatttggagacgatagtgaagatgaaggggcatcccatcacacagggagtgacaaccattccgaaagatcctacaatcgctctgaagcttcagaacattctgagcatgaagataatgatcagtcggatgtggaccagcacagtgcttcagaagctgctcatgacgatgaggatgatgatcgtgggcatgggtctgatgaaggcagtcatcattcagagggagatggttctgaaaaagcacattcagaggatgagaagtggggcaaggaggacaaaagtgatcagtcagatgatgaggagaggcagcagaactctgatgatgaggagagacagcagaactctgatgatgaggagaaagcacagaactctgatgaagatgaaaggccgcaggtatctgatgatgaggaaaggcttcagaactcagatnnnnnnnnnnnnnnnnnnnntgatgatgaggagaggccacaggcctcagatgaggagaagatgcagaactcagatgatgatgaaagggcccagcactctgatgaggagaaggtacacaactctgatggtgatgaacgggcccagcattctgatgaggaggaccaagagcacaaatctgg
+s NM_001292086        74 727 +    6644 ataccgattccggctcagactccgactctgaccaggagaacgcgggctccggcagcaacgcctcgggcagcgacagcgagcaggacgacgagcgggaggcagcaaagcccagcaacaaggagctgttcggagacgacagcgaggatgaaggagcctcccatcacacgggcagcgacaaccactccgagaggtcgtacaatcgctccgaagcttcggggcactctgagcacgaagacaacgatcagtcggacgtggaccagcacagcgcttcagaagcggctcatgacgatgaggaggacgagcgggggcacggctctgatgagggcagtcaccattctgagggagatggttcagaaaaggcccattcggaggatgagaagtggggcaaggaggacaaaagcgatcagtcagatgatgaggagcgacagcagaactctgatgatgaggagagacagcagaactcggacgatgaggagaaagcacagaactctgatgaagatgagaggccgcagatgtctgacgatgaggagaggctccagaactcggatgaggagaagatgcagaactctgatgatgaggagaggccgcaggtgtcggacgaggagaagatgcaaaactcagatgatgatgaaagagcccagcactctgatgaggagaagatgcagaactctgacgatgacgaaagggcccagcgctccgatgaggaggagcaggagcataaatctgg
+
+a score=8477.000000
+s LMAW01000003.1 1356116 107 - 4188689 agagtctgcgaggggcagtgacagcgaagatgaagtcctgcgaatgaagcgaaagaaaaccattgcttcagattcagaagcagacagtgatacagaaggacagaaag
+s NM_001292086       801 107 +    6644 agagtctgcaagaggcagcgacagtgaagatgaagtcctgcgaatgaagcgaaagaaaccaattgcatcagattcagaggcggacagtgatacagaaggccagaagg
+
+a score=473.000000
+s LMAW01000003.1 1356798 5 - 4188689 aacac
+s NM_001292086       908 5 +    6644 aacac
+
+a score=7274.000000
+s LMAW01000003.1 1356971 90 - 4188689 gcagatgtcatggatctgtttggaggtgcagatgacatttcctcagggagtgatggagaagacaagccaccaactccagggcagcccatt
+s NM_001292086       913 90 +    6644 gcagacgtcatggacctgtttggaggagcagatgacatttcttcgggaagcgatggggaagacaagccgccaactccaggacagcccatt
+
+a score=12261.000000
+s LMAW01000003.1 1357445 146 - 4188689 gatgagaatggactgagtcaggagcaacaggaagaagagcctattccagagactagaatagaagtagaaataccaaaagtgaacacagacttgggtaatgatttgtattttgtgaagctgcccaatttccttagtgtggagcccag
+s NM_001292086      1003 146 +    6644 gatgagaatgggctgagccaagaacagcaggaggaagagcctattccagagacaagaatagaggtagaaataccaaaagtaaacacagacttgggtaacgatttgtattttgtgaagctgcccaacttcctcagtgtggagcccag
+
+a score=6700.000000
+s LMAW01000003.1 1359020 87 - 4188689 accttttgacccccagtattatgaagatgaatttgaagatgaagagatgcttgatgaagagggtagaactaggttaaaactcaaggt
+s NM_001292086      1149 87 +    6644 accatttgatccccagtattatgaggatgaatttgaagatgaggagatgcttgatgaggaagggagaacgagattaaaacttaaggt
+
+a score=7904.000000
+s LMAW01000003.1 1359444 93 - 4188689 agaaaacacaatacgatggcggatgcgacgggatgaggaagggaatgagatcagagaaagtaatgcacggatagtcaagtggtcagatggaag
+s NM_001292086      1236 93 +    6644 agaaaacacaatacggtggcggatgcggcgagatgaggaagggaatgagattagagaaagcaatgcccggatagtcaagtggtcggatggaag
+
+a score=10924.000000
+s LMAW01000003.1 1359816 135 - 4188689 catgtctcttcacttgggcaatgaggtctttgacgtgtacaaggcgccattacagggagatcacaaccatttgttcatcagacaagggacgggtctacaaggacaggctgttttcaagacaaaattaaccttcag
+s NM_001292086      1329 135 +    6644 catgtctctccacttgggaaatgaggtctttgatgtgtacaaggcaccgctgcagggagatcacacccatctgtttatcagacaagggacaggtctgcaaggacaggctgttttcaggacaaagttaaccttcag
+
+a score=11554.000000
+s LMAW01000003.1 1360523 137 - 4188689 gccacactctacagacagtgccactcacaggaagatgactctgtctctggcagatagatgctcaaagacccagaaaatccgtattctgccaatggcaggtcgggatccagagtctcagcggacagaaatgattaagg
+s NM_001292086      1464 137 +    6644 gccacactctacagacagtgccacgcacaggaagatgactctgtctctggcagataggtgttcaaagacccagaaaattcgtattttgccaatggcgggtcgtgatccggagtctcagcgcacagaaatgattaaga
+
+a score=14859.000000
+s LMAW01000003.1 1360971 171 - 4188689 aagagcttccattcgcagagaatctcagcagcgaagaatgcgggagaagcagcatcagcgtggtctgagtgccaattatttggaacctgatcgctatgatgaagaggatgagggagatgatgcaatcagtctagcagctatcaaaaacagatacaaaggtggcatcagagg
+s NM_001292086      1617 171 +    6644 aagagcttccattcgcagagaatctcagcagcgaagaatgagggagaagcagcatcagcgtggtctgagtgctaattacttagaacccgatcgctatgaagaagaggacgagggagacgatgcgatcagtctagcagctatcaaaaacagatacaaaggtggcatcagaga
+
+a score=8115.000000
+s LMAW01000003.1 1361443 93 - 4188689 cgtgctagaatctactcttctgacagtgatgaaggctcggatgaagataaaacacaaagactactcaaggcaaagaaacttaatagtgatgag
+s NM_001292086      1792 93 +    6644 cgtgctagaatctattcttcagacagtgatgaaggctcagatgaagataaaacacaaagactactcaaggcaaagaaacttactagtgatgag
+
+a score=3465.000000
+s LMAW01000003.1 1365082 72 - 4188689 gaaggtgaannnnnnnnnnnnnnnnnnnnnnnnnnnnatgacaaagcaagtaagaagcataagaaatatgtg
+s NM_001292086      1885 72 +    6644 gaaggggagccttctggaaagagaaaagcagaggatgatgacaaagcaagtaagaagcataagaagtatgtc
+
+a score=7181.000000
+s LMAW01000003.1 1365245 90 - 4188689 ttctcttacagcgaagatgtaagtaaccataatggggttattttgataaaggaaaattccattgaagtctgagtttctgttgtgaataaa
+s NM_001292086      2049 90 +    6644 ttctcttacagcaaagatgtaagtagccatattggggttattttgataaaggagaattccattgaaatttgtgtttctggtgtgaataaa
+
+a score=2475.000000
+s LMAW01000003.1 1365351 69 - 4188689 ttannnnnnnnnnnnnnnnnnntactgcagcaactattgcaccagggattgtcacagtgccaattgtta
+s NM_001292086      2163 69 +    6644 ctcatatttttacatcttatcttactgcagcagctgctgcaatggggatcatcatagcatcagttttta
+
+a score=5156.000000
+s LMAW01000003.1 1365525 90 - 4188689 atagaatgcttaaatgataagtttgcctggcaagggtatggtgatctagcttaccatttgtatggaatggttggaaaaacatatgagtgg
+s NM_001292086      2350 90 +    6644 atagaatgcttaaattataagttttctcagccaggttatggagatgaaggttaccatttgtacagaagatttggaatatcatatgagtgg
+
+a score=2007.000000
+s LMAW01000003.1 1366096 23 - 4188689 tatttctaaacaccttatttgat
+s NM_001292086      2918 23 +    6644 tatttttaaacaccttatttgat
+
+a score=2712.000000
+s LMAW01000003.1 1366220 44 - 4188689 ttggtgagagagcattcagatgttatctatgttgctcttttaac
+s NM_001292086      3036 43 +    6644 ttggtgagatagcatttccatgttatctatgttg-ttttttaac
+
+a score=4764.000000
+s LMAW01000003.1 1366474 72 - 4188689 aagtactgtacctcagtttttcctgcctggaaggtacaggaaatgttctagctgcagtggganggagctctg
+s NM_001292086      3366 72 +    6644 aagtactctacctccatttttcttgcctggaaggtgtgggaagcattctagctgcagaggcacagagctctg
+
+a score=7434.000000
+s LMAW01000003.1 1366549 195 - 4188689 taatgnnnnnnnnnnnnnnnnnnnntgcagtgtagacatttgcaagnnnnnnnnnnnnnnnnnnnnnnnnaactcaggagcctgagtgcctgagaannnnnnnnnnnnnnnnnnnnnnaattaaa------ttgttatctaagagttcctgtgcctctttaatgtgcagataaaacctttctccatctgctggaattttga
+s NM_001292086      3445 201 +    6644 taatatattctgctcagcagctgactgcagtgtagacacttgcaaatatgaaaacaaagtgaaaaatgtctactctgaagtctgagtgcctgagaagctgttcttttgttgttgttgttgttgtttttgtacttgtttctaagagttcctgcctctcttccctgtgcagataaaacctttctccatctgctccaattttga
+
+a score=7427.000000
+s LMAW01000003.1 1366749 106 - 4188689 taatcctcttagctgagacctctgctgggagtctggttccttacatgaggttacctgctttccatttgtaaccttctcttgaagaagccagctgcgtagaaaggga
+s NM_001292086      3647 106 +    6644 taatcctcttaggttagacctctgctgggagtctggctcctcacatgtggttacctgcttttctgttgtaacctgctcaggaagaagccagctgtagaaaaaggga
+
+a score=1617.000000
+s LMAW01000003.1 1366889 21 - 4188689 agcctcccagatacttcttaa
+s NM_001292086      3794 21 +    6644 agtctcccagatacctcttga
+
+a score=9044.000000
+s LMAW01000003.1 1367081 185 - 4188689 actttagcttccaaaaattaggctttttgtggattacgaannnnnnnnnnnnnnnnnnnnnnnnctgttgtcctttgtaaattgctcttttacaatcttctttagacatggaannnnnnnnnnnnnnnnnncatcttaaattggtttaacnatcatcctgtaattaaagttgcttgaatgaactt
+s NM_001292086      3985 184 +    6644 actttagcttccaaaaaggaggc-ttttgtggatttaaaagattaaaaggagtgtttttttctactgtcttcttttgtaaattgctcttctaaagtcttattaaaacatagaattttagaaagtgttttctcagcctaaattggtttaacaatcaccttttaattaaagtcacttgaacgaactt
+
+a score=3529.000000
+s LMAW01000003.1 1367332 55 - 4188689 ttctgctgtcctttttcccagcctcc-agtatgagagaagtacttggaattgtttc
+s NM_001292086      4236 56 +    6644 ttttgctctcccttttcccagcctccaagtatgtgacaattacttggaattgtttt
+
+a score=4944.000000
+s LMAW01000003.1 1367558 93 - 4188689 attttatggctattggcaggatgcaggatgaattctcttgaaacnnnnnnnnnnnnnnnnnnnnngctatatagttttgtggtttcaagtata
+s NM_001292086      4476 93 +    6644 attttctggctagtggtagagtgtaggatcagttgtcttgaaaccatcactgaaaggtgttcctagctatatagttttgttgtttcaggtata
+
+a score=1410.000000
+s LMAW01000003.1 1367688 15 - 4188689 gagttttctttctag
+s NM_001292086      4603 15 +    6644 gagttttctttctag
+
+a score=2985.000000
+s LMAW01000003.1 1367786 45 - 4188689 tgggtcagggaatgcccattgaagggagcagctgctcatgcagtc
+s NM_001292086      4688 45 +    6644 tggatcaggggctgccctcagaagggtgcagctgcccatgcagtc
+
+a score=1719.000000
+s LMAW01000003.1 1367837 18 - 4188689 ttctagcagcaggtttgg
+s NM_001292086      4742 18 +    6644 ttctagcagcaggtttgg
+
+a score=1064.000000
+s LMAW01000003.1 1367979 11 - 4188689 agccagctcag
+s NM_001292086      4882 11 +    6644 agccagctcag
+
+a score=1146.000000
+s LMAW01000003.1 1368029 12 - 4188689 tctctttggcag
+s NM_001292086      4941 12 +    6644 tctctttggcag
+
+a score=2914.000000
+s LMAW01000003.1 1368113 54 - 4188689 gtaactgccagagctggcacattgaaaagtcatctgtgcctcgaggtggtgcaa
+s NM_001292086      5031 54 +    6644 gtagctgcctcagctggcacactggtgtgtcggttgtgactggaggtggtgcaa
+
+a score=10302.000000
+s LMAW01000003.1 1368194 162 - 4188689 gcagcaagatttagcacagctctaatacaaagctgcagcctgaggaatatgttaaacatgagatggtggctttcctatgaagtcatgggtacttatttctctgccagcaggcacggaggtccttggtgtcagcccattctagcagagtgcctttgtttaaca
+s NM_001292086      5113 162 +    6644 gcagcaagttttaactcggctcagatgtgaaactgcagccacaggaatgtgttaaacatgagatggtgactttccagtgaagtcataggtatttatttctcagccagtgggcataggagcccatggtgtcggcccattctaatggagtgcttttctctaaca
+
+a score=1839.000000
+s LMAW01000003.1 1368429 27 - 4188689 ctgtttctgataaatgttcttctcatt
+s NM_001292086      5348 27 +    6644 ttgtttctgataaatgttcttttaata
+