Mercurial > repos > yating-l > ucsc_pslcheck

diff README.rst @ 0:68f0da46b7e2 draft

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planemo upload commit eec1dc1190352126ba498e7b1bf983edc944d166-dirty
author yating-l
date Wed, 12 Apr 2017 17:55:33 -0400
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+++ b/README.rst	Wed Apr 12 17:55:33 2017 -0400
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+Galaxy wrapper for UCSC pslCheck tool (version: v340)
+==========================================================
+validate PSL files
+
+usage:
+-------
+
+   $ pslCheck fileTbl(s)
+
+options:
+   
+   -pass=pslFile - write PSLs without errors to this file
+
+   -targetSizes=sizesFile - tab file with columns of target and size.
+
+    If specified, psl is check to have a valid target and target
+    coordinates.
+
+   -querySizes=sizesFile - file with query sizes.
+
+Source code:
+-------------
+
+http://hgdownload.cse.ucsc.edu/admin/exe/
+
+Licence
+-------
+Please note that commercial download and installation of the Blat and In-Silico PCR software may be licensed through Kent Informatics (http://www.kentinformatics.com).