Mercurial > repos > yating-l > windowmasker_2_5_0

comparison windowmasker_macros.xml @ 0:f80c9e6700ba draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 91a780909d1eda07d17f6aebf7f08f0c024b6a25
author yating-l
date Tue, 16 May 2017 13:18:12 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:f80c9e6700ba
1 <macros>
2 <xml name="requirements">
3 <requirements>
4 <!--
5 Use older version of NCBI BLAST+ because 2.6.0 is available
6 through bioconda but not through the Galaxy toolshed
7 -->
8 <requirement type="package" version="2.5.0">blast</requirement>
9 <yield />
10 </requirements>
11 </xml>
12 <xml name="citations">
13 <citations>
14 <citation type="bibtex">
15 @article{Morgulis_2005,
16 title={WindowMasker: window-based masker for sequenced genomes},
17 volume={22},
18 ISSN={1460-2059},
19 url={http://dx.doi.org/10.1093/bioinformatics/bti774},
20 DOI={10.1093/bioinformatics/bti774},
21 number={2}, journal={Bioinformatics},
22 publisher={Oxford University Press (OUP)},
23 author={Morgulis, A. and Gertz, E. M. and Schäffer, A. A. and Agarwala, R.},
24 year={2005}, month={Nov}, pages={134–141}
25 }
26 </citation>
27 <citation type="bibtex">
28 @article{Cock_2015,
29 title={NCBI BLAST+ integrated into Galaxy},
30 volume={4},
31 ISSN={2047-217X},
32 url={http://dx.doi.org/10.1186/s13742-015-0080-7},
33 DOI={10.1186/s13742-015-0080-7},
34 number={1},
35 journal={GigaScience},
36 publisher={Oxford University Press (OUP)},
37 author={Cock, Peter J. A. and Chilton, John M. and Grüning, Björn and Johnson, James E. and Soranzo, Nicola},
38 year={2015}, month={Aug}
39 }
40 </citation>
41 <yield />
42 </citations>
43 </xml>
44
45 <!-- Helper function to add optional advanced parameters to command -->
46 <token name="@OPTIONAL_PARAM_FUNC@">
47 <![CDATA[
48 #def optional_param($_flag, $_flag_value, $_sep=" ")
49 #if str($_flag_value) and str($_flag_value).strip():
50 ${_flag}${_sep}${_flag_value}
51 #end if
52 #end def
53 ]]>
54 </token>
55 </macros>