Mercurial > repos > yhoogstrate > edger_with_design_matrix
comparison edgeR_Design_from_Expression_Matrix.xml @ 7:55f4e42f91ba draft
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| author | yhoogstrate |
|---|---|
| date | Wed, 08 Feb 2017 10:28:17 -0500 |
| parents | ec951a5017f8 |
| children | 31a23ae7c61e |
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| 6:a6e388381821 | 7:55f4e42f91ba |
|---|---|
| 61 | 61 |
| 62 <repeat name="treatments" title="Factor/Condition" min="1"> | 62 <repeat name="treatments" title="Factor/Condition" min="1"> |
| 63 <param name="name" type="text" value="FactorName" label="Specify a name for the factor / condition" help="e.g. 'Tumor vs. Normal', 'Timepoint' or 'DiseaseState'. Field must be non-numerical, preferably only letters!!" /> | 63 <param name="name" type="text" value="FactorName" label="Specify a name for the factor / condition" help="e.g. 'Tumor vs. Normal', 'Timepoint' or 'DiseaseState'. Field must be non-numerical, preferably only letters!!" /> |
| 64 <repeat name="rep_factorLevel" title="Factor level" min="1"> | 64 <repeat name="rep_factorLevel" title="Factor level" min="1"> |
| 65 <param name="factorLevel" type="text" value="FactorLevel" label="Specify a condition" help="e.g. Tumor or Normal; Treated, untreaded or placebo. Field must be non-numerical, preferably only letters!!" /> | 65 <param name="factorLevel" type="text" value="FactorLevel" label="Specify a condition" help="e.g. Tumor or Normal; Treated, untreaded or placebo. Field must be non-numerical, preferably only letters!!" /> |
| 66 <param name="factorIndex" numerical="false" use_header_names="true" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" multiple="true" size="120" display="checkboxes"> | 66 <param name="factorIndex" numerical="false" use_header_names="true" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" multiple="true"> |
| 67 <validator type="no_options" message="Please select at least one column." /> | 67 <validator type="no_options" message="Please select at least one column." /> |
| 68 </param> | 68 </param> |
| 69 </repeat> | 69 </repeat> |
| 70 </repeat> | 70 </repeat> |
| 71 | 71 |
| 77 <when value="false" /> | 77 <when value="false" /> |
| 78 <when value="true"> | 78 <when value="true"> |
| 79 <repeat name="blocking_repeat" title="Blocking condition" min="1"> | 79 <repeat name="blocking_repeat" title="Blocking condition" min="1"> |
| 80 <param name="blocking_name" type="text" value="" label="Specify a name for a blocking condition" help="e.g.'Patients' or 'Batches'" /> | 80 <param name="blocking_name" type="text" value="" label="Specify a name for a blocking condition" help="e.g.'Patients' or 'Batches'" /> |
| 81 <repeat name="block" title="Block" min="2"> | 81 <repeat name="block" title="Block" min="2"> |
| 82 <param name="block_index" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" numerical="True" multiple="true" use_header_names="true" size="120" display="checkboxes"> | 82 <param name="block_index" label="Select columns that are associated with this factor level" type="data_column" data_ref="expression_matrix" numerical="True" multiple="true" use_header_names="true"> |
| 83 <validator type="no_options" message="Please select at least one column." /> | 83 <validator type="no_options" message="Please select at least one column." /> |
| 84 </param> | 84 </param> |
| 85 </repeat> | 85 </repeat> |
| 86 </repeat> | 86 </repeat> |
| 87 </when> | 87 </when> |