Mercurial > repos > yhoogstrate > edger_with_design_matrix

comparison edgeR_Concatenate_Expression_Matrices.xml @ 6:a6e388381821 draft

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Uploaded
author yhoogstrate
date Wed, 08 Feb 2017 09:10:01 -0500
parents ec951a5017f8
children 31a23ae7c61e
comparison
equal deleted inserted replaced
5:bde663b872d9 6:a6e388381821
49 <option value="false">No</option> 49 <option value="false">No</option>
50 <option value="true" selected="true">Yes</option> 50 <option value="true" selected="true">Yes</option>
51 </param> 51 </param>
52 <when value="false" /> 52 <when value="false" />
53 <when value="true"> 53 <when value="true">
54 <param name="sample_geneids" type="data" format="tabular" label="Select Read-count dataset that contains a column for GeneIDs" help="from featureCounts/DEXSeq-count/HTSeq-count, etc." /> 54 <param name="sample_geneids" type="data" format="tabular"
55 <param name="column_geneids" numerical="false" use_header_names="true" label="Select GeneID column" type="data_column" data_ref="sample_geneids" multiple="false"> 55 label="Select Read-count dataset that contains a column for GeneIDs"
56 help="from featureCounts/DEXSeq-count/HTSeq-count, etc." />
57
58 <param name="column_geneids"
59 numerical="false"
60 use_header_names="true"
61 label="Select GeneID column"
62 type="data_column"
63 data_ref="sample_geneids"
64 multiple="false">
56 <validator type="no_options" message="Please select at least one column." /> 65 <validator type="no_options" message="Please select at least one column." />
57 </param> 66 </param>
58 </when> 67 </when>
59 </conditional> 68 </conditional>
60 69
61 <repeat name="samples" title="Expression Table" help="E.g. a earlier concatenated table, or a HT-seq, featureCounts or DESeq-count result."> 70 <repeat name="samples" title="Expression Table" help="E.g. a earlier concatenated table, or a HT-seq, featureCounts or DESeq-count result.">
62 <param name="sample" type="data" format="tabular" label="Read-count dataset that belongs to a pair" help="from featureCounts/DEXSeq-count/HTSeq-count, etc." /> 71 <param name="sample" type="data" format="tabular" label="Read-count dataset that belongs to a pair" help="from featureCounts/DEXSeq-count/HTSeq-count, etc." />
63 <!-- select columns --> 72 <!-- select columns -->
64 <param name="column_index" numerical="false" use_header_names="true" label="Select columns that are associated with this factor level" type="data_column" data_ref="sample" multiple="true" size="120" display="checkboxes"> 73 <param name="column_index"
74 numerical="false"
75 use_header_names="true"
76 label="Select columns that are associated with this factor level"
77 type="data_column"
78 data_ref="sample"
79 multiple="true">
65 <validator type="no_options" message="Please select at least one column." /> 80 <validator type="no_options" message="Please select at least one column." />
66 </param> 81 </param>
67 </repeat> 82 </repeat>
68 83
69 <conditional name="add_lengths"> 84 <conditional name="add_lengths">