Mercurial > repos > yhoogstrate > edger_with_design_matrix

comparison tool_dependencies.xml @ 2:ec951a5017f8 draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/edger_with_design_matrix commit a6cf3ec153ca4a3846258a223d287ca125eea7be
author yhoogstrate
date Tue, 01 Sep 2015 09:15:07 -0400
parents a4a4c88783ea
children
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1:a4a4c88783ea 2:ec951a5017f8
5 </package> 5 </package>
6 6
7 <package name="design_matrix_creator" version="1.0.0"> 7 <package name="design_matrix_creator" version="1.0.0">
8 <install version="1.0"> 8 <install version="1.0">
9 <actions> 9 <actions>
10 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/design_matrix_creator $INSTALL_DIR/bin/</action> 10 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/design_matrix_creator $INSTALL_DIR/bin/design_matrix_creator</action>
11 <action type="chmod"> 11 <action type="chmod">
12 <file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file> 12 <file mode="755">$INSTALL_DIR/bin/design_matrix_creator</file>
13 </action> 13 </action>
14 <action type="set_environment"> 14 <action type="set_environment">
15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
16 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
17 </action> 16 </action>
18 </actions> 17 </actions>
19 </install> 18 </install>
20 </package> 19 </package>
21 20
22 <package name="edger_dge_table_to_bedgraph" version="1.0.0"> 21 <package name="edger_dge_table_to_bedgraph" version="1.0.0">
23 <install version="1.0"> 22 <install version="1.0">
24 <actions> 23 <actions>
25 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/</action> 24 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/bin/edger_dge_table_to_bedgraph $INSTALL_DIR/bin/edger_dge_table_to_bedgraph</action>
26 <action type="chmod"> 25 <action type="chmod">
27 <file mode="755">$INSTALL_DIR/bin/edger_dge_table_to_bedgraph</file> 26 <file mode="755">$INSTALL_DIR/bin/edger_dge_table_to_bedgraph</file>
28 </action> 27 </action>
29 <action type="set_environment"> 28 <action type="set_environment">
30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 29 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
31 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
32 </action> 30 </action>
33 </actions> 31 </actions>
34 </install> 32 </install>
35 </package> 33 </package>
36 </tool_dependency> 34 </tool_dependency>